From Foundations of Phylodynamics to New Applications in Cell Biology

Project Information

PhyCogy

Grant agreement ID: 101001077

DOI

10.3030/101001077

EC signature date 20 January 2021

Start date 1 June 2021

End date 31 May 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 999 540,00

EU contribution

€ 1 999 540,00

Coordinated by

EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH
Switzerland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data Management Plan

Data Management Plan DMP

Publications

Peer reviewed articles (3)

TiDeTree: a Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data

Author(s): Sophie Seidel; Tanja Stadler
Published in: Proceedings of the Royal Society B: Biological Sciences, Issue 1986, 2022, ISSN 0962-8452
Publisher: Royal Society of London
DOI: 10.1098/rspb.2022.1844

Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations

Author(s): Jérémie Scire, Joëlle Barido-Sottani, Denise Kühnert, Timothy G. Vaughan, Tanja Stadler
Published in: Viruses, 2022, ISSN 1999-4915
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14081648

HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa

Author(s): Etthel M. Windels, Eddie M. Wampande, Moses L. Joloba, W. Henry Boom, Galo A. Goig, Helen Cox,Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
Published in: PLOS Pathogens, 2024, ISSN 1553-7374
Publisher: PLOS
DOI: 10.1371/journal.ppat.1011675

Other (4)

Integrating Transmission Dynamics and Pathogen Evolution Through a Bayesian Approach

Author(s): Ugne Stolz, Tana Stadler, Timothy G. Vaughan
Published in: bioRxiv, 2024
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.04.15.589468

The Fossilised Birth-Death Model is Identifiable

Author(s): Kate Truman, Timothy G. Vaughan, Alex Gavryushkin, Alexandra Gavryushkina
Published in: bioRxiv, 2024
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.02.08.579547

Bayesian phylodynamics of early vertebrate development in BEAST 2

Author(s): Antoine Zwaans, Sophie Seidel, Marc Manceau, Tanja Stadler
Published in: bioRxiv, 2024
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.07.04.601658

EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering

Author(s): Ciara Judge, Timothy G. Vaughan, Timothy Russel, Sam Abbott, Louis du Plessis, Tanja Stadler, Oliver Brady, Sarah Hill
Published in: bioRxiv, 2024
Publisher: Cold Sprint Harbor Laboratory
DOI: 10.1101/2023.12.18.572106

Thesis and dissertations (1)

Phylogenetic Methods in Single-Cell Biology

Author(s): Sophie Seidel
Published in: NO JOURNAL TITLE, 2024
Publisher: ETH Zürich
DOI: 10.3929/ethz-b-000674908