Paleovirology, the evolutionary dynamics of viral cross-species transmissions, and the consequences of virus-host gene exchange

Project Information

PALVIREVOL

Grant agreement ID: 101001623

DOI

10.3030/101001623

EC signature date 30 March 2021

Start date 1 October 2021

End date 31 March 2028

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 999 805,00

EU contribution

€ 1 999 805,00

Coordinated by

THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
United Kingdom

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (10)

Ecological and evolutionary dynamics of cell-virus-virophage systems

Author(s): Jose Gabriel Nino Barreat, Aris Katzourakis
Published in: PLoS Computational Biology, 2024, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1010925

Four principles to establish a universal virus taxonomy

Author(s): Peter Simmonds, Evelien M. Adriaenssens, F. Murilo Zerbini, Nicola G. A. Abrescia, Pakorn Aiewsakun, Poliane Alfenas-Zerbini, Yiming Bao, Jakub Barylski, Christian Drosten, Siobain Duffy, W. Paul Duprex, Bas E. Dutilh, Santiago F. Elena, Maria Laura García, Sandra Junglen, Aris Katzourakis, Eugene V. Koonin, Mart Krupovic, Jens H. Kuhn, Amy J. Lambert, Elliot J. Lefkowitz, Małgorzata Łobocka, C
Published in: PLoS Biology, Issue 21(2), 2023, Page(s) e3001922, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3001922

Investigating the evolutionary origins of the first three SARS-CoV-2 variants of concern

Author(s): Mahan Ghafari, Qihan Liu, Arushi Dhillon, Aris Katzourakis, Daniel B. Weissman
Published in: Frontiers in virology, 2022, ISSN 2673-818X
Publisher: Fronteirs Media
DOI: 10.3389/fviro.2022.942555

Evolutionary Analysis of Placental Orthologues Reveals Two Ancient DNA Virus Integrations

Author(s): Jose Gabriel Nino Barreat, Aris Katzourakis
Published in: Journal of Virology, 2022, ISSN 1098-5514
Publisher: American Society of Microbiology
DOI: 10.1128/jvi.00933-22

Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses

Author(s): Mahan Ghafari , Merike Sõmera, Cecilia Sarmiento, Annette Niehl, Eugénie Hébrard, Theocharis Tsoleridis, Jonathan Ball, Benoît Moury, Philippe Lemey, Aris Katzourakis, Denis Fargette
Published in: PLoS Pathogens, 2023, ISSN 1553-7366
Publisher: Public Library of Science
DOI: 10.1371/journal.ppat.1011911

Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins

Author(s): Jose Gabriel Nino Barreat, Anselmo Jiro Kamada, Charles Reuben de Souza, Aris Katzourakis
Published in: Biology Letters, Issue 19, 2023, Page(s) 20220464, ISSN 1744-957X
Publisher: Royal Society
DOI: 10.1098/rsbl.2022.0464

Purifying selection determines the short-term time dependency of evolutionary rates in SARS-CoV-2 and pH1N1 influenza

Author(s): Mahan Ghafari, Louis du Plessis, Jayna Raghwani, Samir Bhatt, Bo Xu, Oliver G Pybus, Aris Katzourakis
Published in: Molecular Biology and Evolution, Issue Issue 2, 2023, Page(s) msac009, ISSN 1537-1719
Publisher: Oxford University Press on behalf of the Society for Molecular Biology and Evolution
DOI: 10.1093/molbev/msac009

The evolution of SARS-CoV-2

Author(s): Peter V. Markov, Mahan Ghafari, Martin Beer, Katrina Lythgoe, Peter Simmonds, Nikolaos I. Stilianakis & Aris Katzourakis
Published in: Nature Reviews Microbiology, 2023, ISSN 1740-1526
Publisher: Nature Publishing Group
DOI: 10.1038/s41579-023-00878-2

Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes

Author(s): Jose Gabriel Nino Barreat, Aris Katzourakis
Published in: Nature Microbiology, Issue 9, 2024, Page(s) 3013–3024, ISSN 2058-5276
Publisher: Nature Portfolio
DOI: 10.1038/s41564-024-01825-4

A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data

Author(s): Mahan Ghafari, Oliver J. Watson, Ariel Karlinsky, Luca Ferretti, Aris Katzourakis
Published in: Nature Communications, Issue 13, 2022, Page(s) Article Number: 3015, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-30711-y

Other (1)

Deep-mining of vertebrate genomes reveals an unexpected diversity of endogenous viral elements

Author(s): Jose Gabriel Nino Barreat, Aris Katzourakis
Published in: bioRxiv, 2023
Publisher: biorxiv
DOI: 10.1101/2023.10.26.564176