PHAGENET: PHAge GEnetic NETworking in the microbiome

Project Information

PHAGENET

Grant agreement ID: 101001684

DOI

10.3030/101001684

EC signature date 8 April 2021

Start date 1 July 2021

End date 30 June 2027

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 999 988,00

EU contribution

€ 1 999 988,00

Coordinated by

UNIVERSITY COLLEGE CORK - NATIONAL UNIVERSITY OF IRELAND, CORK
Ireland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data Management Plan (DMP)

Data Management Plan DMP

Publications

Peer reviewed articles (12)

Social anxiety disorder-associated gut microbiota increases social fear

Author(s): Nathaniel L. Ritz, Marta Brocka, Mary I. Butler, Caitlin S. M. Cowan, Camila Barrera-Bugueño, Christopher J. R. Turkington, Lorraine A. Draper, Thomaz F. S. Bastiaanssen, Valentine Turpin, Lorena Morales, David Campos, Cassandra E. Gheorghe, Anna Ratsika, Virat Sharma, Anna V. Golubeva, Maria R. Aburto, Andrey N. Shkoporov, Gerard M. Moloney, Colin Hill, Gerard Clarke, David A. Slattery, Timothy
Published in: PNAS, Issue 2023, 2023, ISSN 1091-6490
Publisher: NAS
DOI: 10.1073/pnas.2308706120

Draft Genome Sequence of Legionella pneumophila subsp. pneumophila Strain DSM 25199

Author(s): Neda Nezam-Abadi, Christopher J. R. Turkington, Lorraine A. Draper, Andrey N. Shkoporov, R. Paul Ross, Colin Hill
Published in: Microbiology Resource Announcements, Issue 2023, 2023, ISSN 2576-098X
Publisher: American Society of Microbiology
DOI: 10.1128/mra.00048-23

Transmission and dynamics of mother-infant gut viruses during pregnancy and early life

Author(s): Sanzhima Garmaeva, Trishla Sinha, Anastasia Gulyaeva, Nataliia Kuzub, Johanne E. Spreckels, Sergio Andreu-Sánchez, Ranko Gacesa, Arnau Vich Vila, Siobhan Brushett, Marloes Kruk, null null, Aafje Dotinga, Sanne Gordijn, Soesma Jankipersadsing, Ank de Jonge, Marlou L. A. de Kroon, Gerard H. Koppelman, Lilian L. Peters, Jelmer R. Prins, Sijmen A. Reijneveld, Morris A. Swertz, Henkjan J. Verkade, Jac
Published in: Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-45257-4

Structural atlas of the most abundant human gut virus

Author(s): Bayfield, O.; Shkoporov, A.N.; Yutin, N., Khokhlova, E., Smith, J.; Hawkins, D.; Koonin, E.; Hill, C.; Anston, A.
Published in: Nature, Issue 2023, 2023, Page(s) 409–416, ISSN 2693-5015
Publisher: Springer Nature
DOI: 10.1038/s41586-023-06019-2

Bacteriophages of the Order Crassvirales: What Do We Currently Know about This Keystone Component of the Human Gut Virome?

Author(s): Linda Smith, Ekaterina Goldobina, Bianca Govi, Andrey N. Shkoporov
Published in: Biomolecules, 2023, ISSN 2218-273X
Publisher: MDPI
DOI: 10.3390/biom13040584

Temperate bacteriophages infecting the mucin-degrading bacterium Ruminococcus gnavus from the human gut

Author(s): Colin Buttimer,Ekaterina V. Khokhlova,Lisa Stein,Cara M. Hueston,Bianca Govi,Lorraine A. Draper,R. Paul Ross,Andrey N. Shkoporovb
Published in: Gut Microbes, 2022, ISSN 0307-1022
Publisher: Methuen
DOI: 10.1080/19490976.2023.2194794

Dynamic nature of viral and bacterial communities in human faeces

Author(s): Andrey N. Shkoporov, Orla O'Regan, Linda Smith, Ekaterina V. Khokhlova, Lorraine A. Draper, R. Paul Ross, Colin Hill
Published in: iScience, 2024, ISSN 2589-0042
Publisher: Elsevier
DOI: 10.1016/j.isci.2023.108778

Interpersonal variability of the human gut virome confounds disease signal detection in IBD

Author(s): Stephen R. Stockdale, Andrey N. Shkoporov, Ekaterina V. Khokhlova, Karen M. Daly, Siobhan A. McDonnell, Orla O’ Regan, James A. Nolan, Thomas D. S. Sutton, Adam G. Clooney, Feargal J. Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A. Draper, Fergus Shanahan, R. Paul Ross & Colin Hill
Published in: Communications Biology, Issue 2023, 2023, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1038/s42003-023-04592-w

Abolishment of morphology‑based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee

Author(s): Turner D, Shkoporov AN, Lood C, Millard AD, Dutilh BE, Alfenas-Zerbini P, van Zyl LJ, Aziz RK, Oksanen HM, Poranen MM, Kropinski AM, Barylski J, Brister JR, Chanisvili N, Edwards RA, Enault F, Gillis A, Knezevic P, Krupovic M, Kurtböke I, Kushkina A, Lavigne R, Lehman S, Lobocka M, Moraru C, Moreno Switt A, Morozova V, Nakavuma J, Reyes Muñoz A, Rūmnieks J, Sarkar BL, Sullivan MB, Uchiyama J, W
Published in: Archives of Virology, Issue 2023, 2023, ISSN 0304-8608
Publisher: Springer Verlag
DOI: 10.1007/s00705-022-05694-2

Social fear extinction susceptibility is associated with Microbiota-Gut-Brain axis alterations

Author(s): Nathaniel L. Ritz, Thomaz F.S. Bastiaanssen, Caitlin S.M. Cowan, Linda Smith, Nigel Theune, Marta Brocka, Eibhlís M. Myers, Rachel D. Moloney, Gerard M. Moloney, Andrey N. Shkoporov, Lorraine A. Draper, Colin Hill, Timothy G. Dinan, David A. Slattery, John F. Cryan
Published in: Brain, Behavior, and Immunity, Issue 120, 2024, Page(s) 315-326, ISSN 0889-1591
Publisher: Academic Press
DOI: 10.1016/j.bbi.2024.06.009

Mutualistic interplay between bacteriophages and bacteria in the human gut

Author(s): Shkoporov AN, Turkington CJ, Hill C.
Published in: Nature Reviews Microbiology, 2022, ISSN 1740-1534
Publisher: Springer Nature
DOI: 10.1038/s41579-022-00755-4

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Author(s): Krupovic M, Turner D, Morozova V, Dyall-Smith M, Oksanen HM, Edwards R, Dutilh BE, Lehman SM, Reyes A, Baquero DP, Sullivan MB, Uchiyama J, Nakavuma J, Barylski J, Young MJ, Du S, Alfenas-Zerbini P, Kushkina A, Kropinski AM, Kurtböke I, Brister JR, Lood C, Sarkar BL, Yigang T, Liu Y, Huang L, Wittmann J, Chanishvili N, van Zyl LJ, Rumnieks J, Mochizuki T, Jalasvuori M, Aziz RK, Łobocka M, Stedma
Published in: Archives of Virology, Issue 2021, 2021, ISSN 1432-8798
Publisher: Springer Nature
DOI: 10.1007/s00705-021-05205-9