Tissue-wide identification of genome alterations in cancer

Project Information

TWIGA

Grant agreement ID: 101021019

DOI

10.3030/101021019

EC signature date 12 July 2021

Start date 1 October 2021

End date 30 September 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 631 250,00

EU contribution

€ 2 631 250,00

Coordinated by

KUNGLIGA TEKNISKA HOEGSKOLAN
Sweden

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (4)

Spatially resolved clonal copy number alterations in benign and malignant tissue.

Author(s): Erickson A, He M, Berglund E, Marklund M, Mirzazadeh R, Schultz N, Kvastad L, Andersson A, Bergenstråhle L, Bergenstråhle J, Larsson L, Alonso Galicia L, Shamikh A, Basmaci E, Díaz De Ståhl T, Rajakumar T, Doultsinos D, Thrane K, Ji AL, Khavari PA, Tarish F, Tanoglidi A, Maaskola J, Colling R, Mirtti T, Hamdy FC, Woodcock DJ, Helleday T, Mills IG, Lamb AD, Lundeberg J.
Published in: Nature, Issue Aug 608 (7922), 2022, Page(s) 360-367, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-022-05023-2

Spatial landmark detection and tissue registration with deep learning

Author(s): Markus Ekvall, Ludvig Bergenstråhle, Alma Andersson, Paulo Czarnewski, Johannes Olegård, Lukas Käll, Joakim Lundeberg
Published in: Nature Methods, 2024, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-024-02199-5

Expansion spatial transcriptomics

Author(s): Yuhang Fan, Žaneta Andrusivová, Yunming Wu, Chew Chai, Ludvig Larsson, Mengxiao He, Liqun Luo, Joakim Lundeberg, Bo Wang
Published in: Nature Methods, 2023, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-023-01911-1

Spatial landscapes of cancers: insights and opportunities

Author(s): Julia Chen, Ludvig Larsson, Alexander Swarbrick, Joakim Lundeberg
Published in: Nature Reviews Clinical Oncology, Issue 21, 2024, Page(s) 660-674, ISSN 1759-4774
Publisher: Nature Publishing Group
DOI: 10.1038/s41571-024-00926-7

Other (1)

SnapShot: Spatial transcriptomics

Author(s): Ludvig Larsson 1, Ludvig Bergenstråhle 1, Mengxiao He 1, Zaneta Andrusivova 1, Joakim Lundeberg 1
Published in: Cell, Issue 185, 15, 2022, Page(s) 2840-2840
Publisher: Elsevier
DOI: 10.1016/j.cell.2022.06.002

Non-peer reviewed articles (1)

Learning Stationary Markov Processes with Contrastive Adjustment

Author(s): Bergenstråhle, Ludvig; Lagergren, Jens; Lundeberg, Joakim
Published in: arXiv, Issue 2, 2023, ISSN 2331-8422
Publisher: ArXiv.org
DOI: 10.48550/arxiv.2303.05497