Decoding animal genomes into cell types

Project Information

Genome2Cells

Grant agreement ID: 101054387

DOI

10.3030/101054387

EC signature date 23 November 2022

Start date 1 June 2023

End date 31 May 2028

Funded under

• European Research Council (ERC)

Total cost

€ 2 500 000,00

EU contribution

€ 2 500 000,00

Coordinated by

VIB VZW
Belgium

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Data Management Plan (1)

Data Management Plan

Drafting of data management plan

Publications

Peer reviewed articles (7)

Nova-ST: Nano-patterned ultra-dense platform for spatial transcriptomics

Author(s): Suresh Poovathingal; Kristofer Davie; Lars E. Borm; Roel Vandepoel; Nicolas Poulvellarie; Annelien Verfaillie; Nikky Corthout; Stein Aerts
Published in: Cell Reports Methods, 2024, ISSN 2667-2375
Publisher: Elsevier
DOI: 10.1016/J.CRMETH.2024.100831

eLife

Author(s): Jasper Janssens; Pierre Mangeol; Nikolai Hecker; Gabriele Partel; Katina I Spanier; Joy N Ismail; Gert J Hulselmans; Stein Aerts; Frank Schnorrer
Published in: eLife, 2023, ISSN 2050-084X
Publisher: eLife
DOI: 10.7554/ELIFE.92618

Nature

Author(s): Ibrahim I. Taskiran; Katina I. Spanier; Hannah Dickmänken; Niklas Kempynck; Alexandra Pančíková; Eren Can Ekşi; Gert Hulselmans; Joy N. Ismail; Koen Theunis; Roel Vandepoel; Valerie Christiaens; David Mauduit; Stein Aerts
Published in: Nature, 2023, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1101/2022.07.26.501466V1

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Author(s): Nelson J. Johansen; Niklas Kempynck; Nathan R. Zemke; Saroja Somasundaram; Seppe De Winter; Marcus Hooper; Deepanjali Dwivedi; Ruchi Lohia; Fabien Wehbe; Bocheng Li; Darina Abaffyová; Ethan J. Armand; Julie De Man; Eren Can Eksi; Nikolai Hecker; Gert Hulselmans; Vasilis Konstantakos; David Mauduit; John K. Mich; Gabriele Partel; Tanya L. Daigle; Boaz P. Levi; Kai Zhang; Yoshiaki Tanaka; Jesse Gillis; Jonathan T. Ting; Yoav Ben-Simon; Jeremy Miller; Joseph R. Ecker; Bing Ren; Stein Aerts; Ed S. Lein; Bosiljka Tasic; Trygve E. Bakken
Published in: Cell Genomics, 2024, ISSN 2666-979X
Publisher: Elsevier
DOI: 10.1101/2024.08.21.609075

Modelling and design of transcriptional enhancers

Author(s): Seppe De Winter; Vasileios Konstantakos; Stein Aerts
Published in: Nature Reviews Bioengineering, 2025, ISSN 2731-6092
Publisher: Springer Nature
DOI: 10.1038/S44222-025-00280-Y

Enhancer-driven cell type comparison reveals similarities between the mammalian and bird pallium

Author(s): Nikolai Hecker, Niklas Kempynck, David Mauduit, Darina Abaffyová, Roel Vandepoel, Sam Dieltiens, Lars Borm, Ioannis Sarropoulos, Carmen Bravo González-Blas, Julie De Man, Kristofer Davie, Elke Leysen, Jeroen Vandensteen, Rani Moors, Gert Hulselmans, Lynette Lim, Joris De Wit, Valerie Christiaens, Suresh Poovathingal, Stein Aerts
Published in: Science, Issue 387, 2025, ISSN 0036-8075
Publisher: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/SCIENCE.ADP3957

Evaluating single-cell ATAC-seq atlasing technologies using sequence-to-function modeling

Author(s): Hannah Dickmänken, Marta Wojno, Lukas Mahieu, Koen Theunis, Eren Can Ekşi, Valerie Christiaens, Niklas Kempynck, Florian V. De Rop, Natalie Roels, Katina I. Spanier, Roel Vandepoel, Gert Hulselmans, Suresh Poovathingal, Stein Aerts
Published in: Nature Communications, 2026, ISSN 2041-1723
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41467-026-68742-4