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CORDIS

New Copernicus capability for trophic ocean networks

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

D5.1 Technical specification of the LTL products (opens in new window)

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products (opens in new window)

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products (opens in new window)

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D5.2 Report on all the integrated pelagic model developments in T5.2.1-4 (opens in new window)

The report will describe changes made to the LTL model systems of NECCTON and the simulation configurations that will support the generation of the new LTL products.

D4.1 Github organisation and guide of good practice (opens in new window)

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D8.3 Report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4 (opens in new window)

This document will outline methods and results of multiple environmental pressures mapping and vulnerability of marine ecosystems and target species

D2.1 Plan for exploitation, dissemination and communication (opens in new window)

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D4.2 Assessment of L2 PRISMA production chain, outputs and transferability (opens in new window)

This document will report on the assessment of PRISMA L2 hyperspectral reflectance for selected open ocean sites, using autonomous in situ radiometry. The transferability to future hyperspectral sensors will be evaluated.

D7.1 Technical specification of the HTL products (opens in new window)

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM (opens in new window)

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

D3.2 Offline simulation tool (opens in new window)

This document will describe how to obtain, install and use the newly developed offline simulation tool, which performs simulations with FABM-based biogeochemical models driven with CMEMS model outputs. The tool will be available from a public GitHub repository; usage instructions will be available from an accompanying online wiki. The deliverable document is therefore expected to be brief and point primarily to these online resources.

D1.1 Initial Data Management Plan (opens in new window)

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Publications

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model (opens in new window)

Author(s): Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Published in: Scientific Reports, Issue 14, 2024, ISSN 2045-2322
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks (opens in new window)

Author(s): Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Published in: Biogeosciences., 2023, ISSN 1726-4170
Publisher: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces (opens in new window)

Author(s): S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Published in: Progress in Oceanography, Issue 229, 2024, ISSN 0079-6611
Publisher: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study (opens in new window)

Author(s): Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Published in: Frontiers in Marine Science, 2023, ISSN 2296-7745
Publisher: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe (opens in new window)

Author(s): Robert J. Wilson, Susan Kay, Stefano Ciavatta
Published in: Ecological Informatics, 2024, ISSN 1574-9541
Publisher: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea (opens in new window)

Author(s): Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Published in: Marine Pollution Bulletin, Issue 207, 2024, ISSN 0025-326X
Publisher: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic (opens in new window)

Author(s): Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Published in: Crossref, 2025, ISSN 1866-3516
Publisher: Copernicus Publications
DOI: 10.5194/ESSD-2025-207

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters (opens in new window)

Author(s): Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Published in: Geoscientific Model Development, Issue 17, 2025, ISSN 1991-9603
Publisher: Copernicus GmbH
DOI: 10.5194/GMD-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea (opens in new window)

Author(s): Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Published in: Ocean Science, 2024, ISSN 1812-0792
Publisher: Copernicus Publications
DOI: 10.5194/OS-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020 (opens in new window)

Author(s): Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Published in: Environmental Science &amp; Technology, 2024, ISSN 1520-5126
Publisher: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea (opens in new window)

Author(s): Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Published in: Biogeosciences, 2023, ISSN 1726-4170
Publisher: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic (opens in new window)

Author(s): Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Published in: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Publisher: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations (opens in new window)

Author(s): S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Published in: Progress in Oceanography, Issue 231, 2025, ISSN 0079-6611
Publisher: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103384

Progress in Oceanography (opens in new window)

Author(s): S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Published in: Progress in Oceanography, 2024, ISSN 0079-6611
Publisher: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation (opens in new window)

Author(s): Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Published in: Ocean Dynamics, 2023, ISSN 1616-7228
Publisher: Springer
DOI: 10.21203/RS.3.RS-4454996/V1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish (opens in new window)

Author(s): P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Published in: Earth's Future, Issue 12, 2024, ISSN 2328-4277
Publisher: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies (opens in new window)

Author(s): Olivier Beauchard
Published in: Front. Mar. Sci., 2023, ISSN 2296-7745
Publisher: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism (opens in new window)

Author(s): Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Published in: Ecological Modelling, Issue 493, 2024, ISSN 0304-3800
Publisher: Elsevier BV
DOI: 10.1016/J.ECOLMODEL.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels (opens in new window)

Author(s): Michael C. Denes, Erik van Sebille
Published in: Journal of Open Source Software, Issue 9, 2024, ISSN 2475-9066
Publisher: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation (opens in new window)

Author(s): Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Published in: Diversity and Distributions, 2024, ISSN 1472-4642
Publisher: Wiley Online Library
DOI: 10.1111/DDI.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs (opens in new window)

Author(s): Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Published in: Marine Pollution Bulletin, Issue 211, 2025, ISSN 0025-326X
Publisher: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability (opens in new window)

Author(s): Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Published in: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Publisher: Nature Portfolio
DOI: 10.1038/S41559-024-02448-Y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models (opens in new window)

Author(s): Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Published in: Methods in Ecology and Evolution, Issue 16, 2025, ISSN 2041-210X
Publisher: Wiley
DOI: 10.1111/2041-210X.14465

NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)

Author(s): Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Published in: Zenodo, 2024
Publisher: Zenodo

NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability (opens in new window)

Author(s): Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
Published in: 2024
Publisher: Zenodo
DOI: 10.5281/ZENODO.14551764

Description and guideline on the NECCTON-algo GitHub organization (opens in new window)

Author(s): Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2 (opens in new window)

Author(s): Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Published in: Zenodo, 2025
Publisher: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM (opens in new window)

Author(s): Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Published in: Zenodo, 2024
Publisher: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1) (opens in new window)

Author(s): Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2) (opens in new window)

Author(s): Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Published in: Zenodo, 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications (opens in new window)

Author(s): Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Published in: ESS Open Archive (Authorea, Inc.), 2023
Publisher: American Geophysical Union
DOI: 10.22541/ESSOAR.167810427.75944849/V1

Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle (opens in new window)

Author(s): Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Published in: EGUsphere [preprint] (Copernicus GmbH) In Press, 2025
Publisher: EGU Sphere
DOI: 10.5194/EGUSPHERE-2025-1465

NECCTON Report on integrated modelling of pollutants and single pressures D8.2 (opens in new window)

Author(s): Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Published in: Zenodo, 2025
Publisher: Zenodo
DOI: 10.5281/ZENODO.14930390

Deliverable 3.2 Offline simulation tool (opens in new window)

Author(s): Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
Published in: 2025
Publisher: Zendon
DOI: 10.5281/ZENODO.14826730

NECCTON: Technical specification of the benthic products (D6.1) (opens in new window)

Author(s): Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1) (opens in new window)

Author(s): Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1" (opens in new window)

Author(s): Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1) (opens in new window)

Author(s): Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Published in: Zenodo, 2023
Publisher: Zenodo
DOI: 10.5281/ZENODO.10057558

Ecosystem modelling for the ocean decade - facing the challenge (opens in new window)

Author(s): Steenbeek, Jeroen
Published in: TDX (Tesis Doctorals en Xarxa), 2024
Publisher: Zenodo
DOI: 10.13140/RG.2.2.20202.94403

Modeling the high-impact-low-probability oil spills in the Mediterranean

Author(s): Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Published in: 2024, ISSN 2975-0288
Publisher: Firenze University Press

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