New Copernicus capability for trophic ocean networks

Informazioni relative al progetto

NECCTON

ID dell’accordo di sovvenzione: 101081273

DOI

10.3030/101081273

Data della firma CE 18 Ottobre 2022

Data di avvio 1 Gennaio 2023

Data di completamento 31 Dicembre 2026

Finanziato da

• Digital, Industry and Space

Costo totale

€ 8 527 590,00

Contributo UE

€ 8 527 588,75

Coordinato da

MERCATOR OCEAN
France

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (10)

D5.1 Technical specification of the LTL products

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D5.2 Report on all the integrated pelagic model developments in T5.2.1-4

The report will describe changes made to the LTL model systems of NECCTON and the simulation configurations that will support the generation of the new LTL products.

D4.1 Github organisation and guide of good practice

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D8.3 Report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4

This document will outline methods and results of multiple environmental pressures mapping and vulnerability of marine ecosystems and target species

D2.1 Plan for exploitation, dissemination and communication

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

This document will report on the assessment of PRISMA L2 hyperspectral reflectance for selected open ocean sites, using autonomous in situ radiometry. The transferability to future hyperspectral sensors will be evaluated.

D7.1 Technical specification of the HTL products

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

Other (1)

D3.2 Offline simulation tool

This document will describe how to obtain, install and use the newly developed offline simulation tool, which performs simulations with FABM-based biogeochemical models driven with CMEMS model outputs. The tool will be available from a public GitHub repository; usage instructions will be available from an accompanying online wiki. The deliverable document is therefore expected to be brief and point primarily to these online resources.

Data Management Plan (1)

D1.1 Initial Data Management Plan

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Pubblicazioni

Peer reviewed articles (23)

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model

Autori: Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Pubblicato in: Scientific Reports, Numero 14, 2024, ISSN 2045-2322
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks

Autori: Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Pubblicato in: Biogeosciences., 2023, ISSN 1726-4170
Editore: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces

Autori: S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Pubblicato in: Progress in Oceanography, Numero 229, 2024, ISSN 0079-6611
Editore: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study

Autori: Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Pubblicato in: Frontiers in Marine Science, 2023, ISSN 2296-7745
Editore: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe

Autori: Robert J. Wilson, Susan Kay, Stefano Ciavatta
Pubblicato in: Ecological Informatics, 2024, ISSN 1574-9541
Editore: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea

Autori: Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Pubblicato in: Marine Pollution Bulletin, Numero 207, 2024, ISSN 0025-326X
Editore: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic

Autori: Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Pubblicato in: Crossref, 2025, ISSN 1866-3516
Editore: Copernicus Publications
DOI: 10.5194/ESSD-2025-207

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters

Autori: Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Pubblicato in: Geoscientific Model Development, Numero 17, 2025, ISSN 1991-9603
Editore: Copernicus GmbH
DOI: 10.5194/GMD-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea

Autori: Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Pubblicato in: Ocean Science, 2024, ISSN 1812-0792
Editore: Copernicus Publications
DOI: 10.5194/OS-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020

Autori: Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Pubblicato in: Environmental Science &amp; Technology, 2024, ISSN 1520-5126
Editore: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea

Autori: Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Pubblicato in: Biogeosciences, 2023, ISSN 1726-4170
Editore: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic

Autori: Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Pubblicato in: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Editore: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations

Autori: S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Pubblicato in: Progress in Oceanography, Numero 231, 2025, ISSN 0079-6611
Editore: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103384

Progress in Oceanography

Autori: S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Pubblicato in: Progress in Oceanography, 2024, ISSN 0079-6611
Editore: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation

Autori: Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Pubblicato in: Ocean Dynamics, 2023, ISSN 1616-7228
Editore: Springer
DOI: 10.21203/RS.3.RS-4454996/V1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish

Autori: P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Pubblicato in: Earth's Future, Numero 12, 2024, ISSN 2328-4277
Editore: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies

Autori: Olivier Beauchard
Pubblicato in: Front. Mar. Sci., 2023, ISSN 2296-7745
Editore: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism

Autori: Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Pubblicato in: Ecological Modelling, Numero 493, 2024, ISSN 0304-3800
Editore: Elsevier BV
DOI: 10.1016/J.ECOLMODEL.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels

Autori: Michael C. Denes, Erik van Sebille
Pubblicato in: Journal of Open Source Software, Numero 9, 2024, ISSN 2475-9066
Editore: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation

Autori: Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Pubblicato in: Diversity and Distributions, 2024, ISSN 1472-4642
Editore: Wiley Online Library
DOI: 10.1111/DDI.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs

Autori: Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Pubblicato in: Marine Pollution Bulletin, Numero 211, 2025, ISSN 0025-326X
Editore: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability

Autori: Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Pubblicato in: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Editore: Nature Portfolio
DOI: 10.1038/S41559-024-02448-Y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models

Autori: Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Pubblicato in: Methods in Ecology and Evolution, Numero 16, 2025, ISSN 2041-210X
Editore: Wiley
DOI: 10.1111/2041-210X.14465

Other (15)

NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)

Autori: Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Pubblicato in: Zenodo, 2024
Editore: Zenodo

NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

Autori: Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
Pubblicato in: 2024
Editore: Zenodo
DOI: 10.5281/ZENODO.14551764

Description and guideline on the NECCTON-algo GitHub organization

Autori: Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autori: Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Pubblicato in: Zenodo, 2025
Editore: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM

Autori: Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Pubblicato in: Zenodo, 2024
Editore: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)

Autori: Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2)

Autori: Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Pubblicato in: Zenodo, 2025
Editore: Zenodo
DOI: 10.5281/ZENODO.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications

Autori: Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Pubblicato in: ESS Open Archive (Authorea, Inc.), 2023
Editore: American Geophysical Union
DOI: 10.22541/ESSOAR.167810427.75944849/V1

Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle

Autori: Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Pubblicato in: EGUsphere [preprint] (Copernicus GmbH) In Press, 2025
Editore: EGU Sphere
DOI: 10.5194/EGUSPHERE-2025-1465

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autori: Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Pubblicato in: Zenodo, 2025
Editore: Zenodo
DOI: 10.5281/ZENODO.14930390

Deliverable 3.2 Offline simulation tool

Autori: Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
Pubblicato in: 2025
Editore: Zendon
DOI: 10.5281/ZENODO.14826730

NECCTON: Technical specification of the benthic products (D6.1)

Autori: Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1)

Autori: Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1"

Autori: Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1)

Autori: Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Pubblicato in: Zenodo, 2023
Editore: Zenodo
DOI: 10.5281/ZENODO.10057558

Thesis and dissertations (1)

Ecosystem modelling for the ocean decade - facing the challenge

Autori: Steenbeek, Jeroen
Pubblicato in: TDX (Tesis Doctorals en Xarxa), 2024
Editore: Zenodo
DOI: 10.13140/RG.2.2.20202.94403

Book chapters (1)

Modeling the high-impact-low-probability oil spills in the Mediterranean

Autori: Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Pubblicato in: 2024, ISSN 2975-0288
Editore: Firenze University Press