New Copernicus capability for trophic ocean networks

Leistungen

D5.1 Technical specification of the LTL products

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D4.1 Github organisation and guide of good practice

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D2.1 Plan for exploitation, dissemination and communication

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D7.1 Technical specification of the HTL products

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

D1.1 Initial Data Management Plan

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Veröffentlichungen

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model

Autoren: Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Veröffentlicht in: Scientific Reports, Ausgabe 14, 2024, ISSN 2045-2322
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1038/s41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks

Autoren: Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Veröffentlicht in: Biogeosciences., 2023, ISSN 1726-4170
Herausgeber: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces

Autoren: S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Veröffentlicht in: Progress in Oceanography, Ausgabe 229, 2024, ISSN 0079-6611
Herausgeber: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study

Autoren: Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Veröffentlicht in: Frontiers in Marine Science, 2023, ISSN 2296-7745
Herausgeber: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe

Autoren: Robert J. Wilson, Susan Kay, Stefano Ciavatta
Veröffentlicht in: Ecological Informatics, 2024, ISSN 1574-9541
Herausgeber: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea

Autoren: Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Veröffentlicht in: Marine Pollution Bulletin, Ausgabe 207, 2024, ISSN 0025-326X
Herausgeber: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters

Autoren: Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Veröffentlicht in: Geoscientific Model Development, Ausgabe 17, 2025, ISSN 1991-9603
Herausgeber: Copernicus GmbH
DOI: 10.5194/gmd-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea

Autoren: Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Veröffentlicht in: Ocean Science, 2024, ISSN 1812-0792
Herausgeber: Copernicus Publications
DOI: 10.5194/os-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020

Autoren: Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Veröffentlicht in: Environmental Science & Technology, 2024, ISSN 1520-5126
Herausgeber: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea

Autoren: Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Veröffentlicht in: Biogeosciences, 2023, ISSN 1726-4170
Herausgeber: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic

Autoren: Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Veröffentlicht in: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Herausgeber: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations

Autoren: S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Veröffentlicht in: Progress in Oceanography, Ausgabe 231, 2025, ISSN 0079-6611
Herausgeber: Elsevier BV
DOI: 10.1016/j.pocean.2024.103384

Progress in Oceanography

Autoren: S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Veröffentlicht in: Progress in Oceanography, 2024, ISSN 0079-6611
Herausgeber: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation

Autoren: Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Veröffentlicht in: Ocean Dynamics, 2023, ISSN 1616-7228
Herausgeber: Springer
DOI: 10.21203/rs.3.rs-4454996/v1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish

Autoren: P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Veröffentlicht in: Earth's Future, Ausgabe 12, 2024, ISSN 2328-4277
Herausgeber: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies

Autoren: Olivier Beauchard
Veröffentlicht in: Front. Mar. Sci., 2023, ISSN 2296-7745
Herausgeber: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism

Autoren: Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Veröffentlicht in: Ecological Modelling, Ausgabe 493, 2024, ISSN 0304-3800
Herausgeber: Elsevier BV
DOI: 10.1016/j.ecolmodel.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels

Autoren: Michael C. Denes, Erik van Sebille
Veröffentlicht in: Journal of Open Source Software, Ausgabe 9, 2024, ISSN 2475-9066
Herausgeber: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation

Autoren: Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Veröffentlicht in: Diversity and Distributions, 2024, ISSN 1472-4642
Herausgeber: Wiley Online Library
DOI: 10.1111/ddi.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs

Autoren: Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Veröffentlicht in: Marine Pollution Bulletin, Ausgabe 211, 2025, ISSN 0025-326X
Herausgeber: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability

Autoren: Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Veröffentlicht in: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Herausgeber: Nature Portfolio
DOI: 10.1038/s41559-024-02448-y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models

Autoren: Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Veröffentlicht in: Methods in Ecology and Evolution, Ausgabe 16, 2025, ISSN 2041-210X
Herausgeber: Wiley
DOI: 10.1111/2041-210X.14465

Description and guideline on the NECCTON-algo GitHub organization

Autoren: Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autoren: Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Veröffentlicht in: Zenodo, 2025
Herausgeber: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM

Autoren: Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Veröffentlicht in: Zenodo, 2024
Herausgeber: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)

Autoren: Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2)

Autoren: Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Veröffentlicht in: Zenodo, 2025
Herausgeber: Zenodo
DOI: 10.5281/zenodo.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications

Autoren: Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Veröffentlicht in: ESS Open Archive (Authorea, Inc.), 2023-03-06 , P. 15p., 2023
Herausgeber: American Geophysical Union
DOI: 10.22541/essoar.167810427.75944849/v1

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autoren: Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Veröffentlicht in: Zenodo, 2025
Herausgeber: Zenodo
DOI: 10.5281/ZENODO.14930390

NECCTON: Technical specification of the benthic products (D6.1)

Autoren: Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1)

Autoren: Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1"

Autoren: Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1)

Autoren: Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Veröffentlicht in: Zenodo, 2023
Herausgeber: Zenodo
DOI: 10.5281/zenodo.10057558

Modeling the high-impact-low-probability oil spills in the Mediterranean

Autoren: Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Veröffentlicht in: 2024, ISSN 2975-0288
Herausgeber: Firenze University Press

Leistungen

Veröffentlichungen

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