New Copernicus capability for trophic ocean networks

Informations projet

NECCTON

N° de convention de subvention: 101081273

DOI

10.3030/101081273

Date de signature de la CE 18 Octobre 2022

Date de début 1 Janvier 2023

Date de fin 31 Decembre 2026

Financé au titre de

• Digital, Industry and Space

Coût total

€ 8 527 590,00

Contribution de l’UE

€ 8 527 588,75

Coordonné par

MERCATOR OCEAN
France

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (10)

D5.1 Technical specification of the LTL products

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D5.2 Report on all the integrated pelagic model developments in T5.2.1-4

The report will describe changes made to the LTL model systems of NECCTON and the simulation configurations that will support the generation of the new LTL products.

D4.1 Github organisation and guide of good practice

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D8.3 Report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4

This document will outline methods and results of multiple environmental pressures mapping and vulnerability of marine ecosystems and target species

D2.1 Plan for exploitation, dissemination and communication

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

This document will report on the assessment of PRISMA L2 hyperspectral reflectance for selected open ocean sites, using autonomous in situ radiometry. The transferability to future hyperspectral sensors will be evaluated.

D7.1 Technical specification of the HTL products

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

Other (1)

D3.2 Offline simulation tool

This document will describe how to obtain, install and use the newly developed offline simulation tool, which performs simulations with FABM-based biogeochemical models driven with CMEMS model outputs. The tool will be available from a public GitHub repository; usage instructions will be available from an accompanying online wiki. The deliverable document is therefore expected to be brief and point primarily to these online resources.

Data Management Plan (1)

D1.1 Initial Data Management Plan

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Publications

Peer reviewed articles (23)

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model

Auteurs: Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Publié dans: Scientific Reports, Numéro 14, 2024, ISSN 2045-2322
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks

Auteurs: Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Publié dans: Biogeosciences., 2023, ISSN 1726-4170
Éditeur: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces

Auteurs: S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Publié dans: Progress in Oceanography, Numéro 229, 2024, ISSN 0079-6611
Éditeur: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study

Auteurs: Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Publié dans: Frontiers in Marine Science, 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe

Auteurs: Robert J. Wilson, Susan Kay, Stefano Ciavatta
Publié dans: Ecological Informatics, 2024, ISSN 1574-9541
Éditeur: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea

Auteurs: Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Publié dans: Marine Pollution Bulletin, Numéro 207, 2024, ISSN 0025-326X
Éditeur: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic

Auteurs: Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Publié dans: Crossref, 2025, ISSN 1866-3516
Éditeur: Copernicus Publications
DOI: 10.5194/ESSD-2025-207

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters

Auteurs: Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Publié dans: Geoscientific Model Development, Numéro 17, 2025, ISSN 1991-9603
Éditeur: Copernicus GmbH
DOI: 10.5194/GMD-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea

Auteurs: Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Publié dans: Ocean Science, 2024, ISSN 1812-0792
Éditeur: Copernicus Publications
DOI: 10.5194/OS-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020

Auteurs: Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Publié dans: Environmental Science &amp; Technology, 2024, ISSN 1520-5126
Éditeur: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea

Auteurs: Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Publié dans: Biogeosciences, 2023, ISSN 1726-4170
Éditeur: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic

Auteurs: Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Publié dans: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Éditeur: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations

Auteurs: S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Publié dans: Progress in Oceanography, Numéro 231, 2025, ISSN 0079-6611
Éditeur: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103384

Progress in Oceanography

Auteurs: S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Publié dans: Progress in Oceanography, 2024, ISSN 0079-6611
Éditeur: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation

Auteurs: Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Publié dans: Ocean Dynamics, 2023, ISSN 1616-7228
Éditeur: Springer
DOI: 10.21203/RS.3.RS-4454996/V1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish

Auteurs: P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Publié dans: Earth's Future, Numéro 12, 2024, ISSN 2328-4277
Éditeur: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies

Auteurs: Olivier Beauchard
Publié dans: Front. Mar. Sci., 2023, ISSN 2296-7745
Éditeur: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism

Auteurs: Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Publié dans: Ecological Modelling, Numéro 493, 2024, ISSN 0304-3800
Éditeur: Elsevier BV
DOI: 10.1016/J.ECOLMODEL.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels

Auteurs: Michael C. Denes, Erik van Sebille
Publié dans: Journal of Open Source Software, Numéro 9, 2024, ISSN 2475-9066
Éditeur: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation

Auteurs: Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Publié dans: Diversity and Distributions, 2024, ISSN 1472-4642
Éditeur: Wiley Online Library
DOI: 10.1111/DDI.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs

Auteurs: Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Publié dans: Marine Pollution Bulletin, Numéro 211, 2025, ISSN 0025-326X
Éditeur: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability

Auteurs: Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Publié dans: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Éditeur: Nature Portfolio
DOI: 10.1038/S41559-024-02448-Y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models

Auteurs: Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Publié dans: Methods in Ecology and Evolution, Numéro 16, 2025, ISSN 2041-210X
Éditeur: Wiley
DOI: 10.1111/2041-210X.14465

Other (15)

NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)

Auteurs: Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Publié dans: Zenodo, 2024
Éditeur: Zenodo

NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

Auteurs: Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
Publié dans: 2024
Éditeur: Zenodo
DOI: 10.5281/ZENODO.14551764

Description and guideline on the NECCTON-algo GitHub organization

Auteurs: Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Auteurs: Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Publié dans: Zenodo, 2025
Éditeur: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM

Auteurs: Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Publié dans: Zenodo, 2024
Éditeur: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)

Auteurs: Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2)

Auteurs: Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Publié dans: Zenodo, 2025
Éditeur: Zenodo
DOI: 10.5281/ZENODO.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications

Auteurs: Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Publié dans: ESS Open Archive (Authorea, Inc.), 2023
Éditeur: American Geophysical Union
DOI: 10.22541/ESSOAR.167810427.75944849/V1

Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle

Auteurs: Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Publié dans: EGUsphere [preprint] (Copernicus GmbH) In Press, 2025
Éditeur: EGU Sphere
DOI: 10.5194/EGUSPHERE-2025-1465

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Auteurs: Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Publié dans: Zenodo, 2025
Éditeur: Zenodo
DOI: 10.5281/ZENODO.14930390

Deliverable 3.2 Offline simulation tool

Auteurs: Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
Publié dans: 2025
Éditeur: Zendon
DOI: 10.5281/ZENODO.14826730

NECCTON: Technical specification of the benthic products (D6.1)

Auteurs: Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1)

Auteurs: Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1"

Auteurs: Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1)

Auteurs: Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/ZENODO.10057558

Thesis and dissertations (1)

Ecosystem modelling for the ocean decade - facing the challenge

Auteurs: Steenbeek, Jeroen
Publié dans: TDX (Tesis Doctorals en Xarxa), 2024
Éditeur: Zenodo
DOI: 10.13140/RG.2.2.20202.94403

Book chapters (1)

Modeling the high-impact-low-probability oil spills in the Mediterranean

Auteurs: Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Publié dans: 2024, ISSN 2975-0288
Éditeur: Firenze University Press