New Copernicus capability for trophic ocean networks

Informacje na temat projektu

NECCTON

Identyfikator umowy o grant: 101081273

DOI

10.3030/101081273

Data podpisania przez KE 18 Października 2022

Data rozpoczęcia 1 Stycznia 2023

Data zakończenia 31 Grudnia 2026

Finansowanie w ramach

• Digital, Industry and Space

Koszt całkowity

€ 8 527 590,00

Wkład UE

€ 8 527 588,75

Koordynowany przez

MERCATOR OCEAN
France

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (10)

D5.1 Technical specification of the LTL products

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D5.2 Report on all the integrated pelagic model developments in T5.2.1-4

The report will describe changes made to the LTL model systems of NECCTON and the simulation configurations that will support the generation of the new LTL products.

D4.1 Github organisation and guide of good practice

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D8.3 Report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4

This document will outline methods and results of multiple environmental pressures mapping and vulnerability of marine ecosystems and target species

D2.1 Plan for exploitation, dissemination and communication

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

This document will report on the assessment of PRISMA L2 hyperspectral reflectance for selected open ocean sites, using autonomous in situ radiometry. The transferability to future hyperspectral sensors will be evaluated.

D7.1 Technical specification of the HTL products

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

Other (1)

D3.2 Offline simulation tool

This document will describe how to obtain, install and use the newly developed offline simulation tool, which performs simulations with FABM-based biogeochemical models driven with CMEMS model outputs. The tool will be available from a public GitHub repository; usage instructions will be available from an accompanying online wiki. The deliverable document is therefore expected to be brief and point primarily to these online resources.

Data Management Plan (1)

D1.1 Initial Data Management Plan

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Publikacje

Peer reviewed articles (23)

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model

Autorzy: Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Opublikowane w: Scientific Reports, Numer 14, 2024, ISSN 2045-2322
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks

Autorzy: Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Opublikowane w: Biogeosciences., 2023, ISSN 1726-4170
Wydawca: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces

Autorzy: S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Opublikowane w: Progress in Oceanography, Numer 229, 2024, ISSN 0079-6611
Wydawca: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study

Autorzy: Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Opublikowane w: Frontiers in Marine Science, 2023, ISSN 2296-7745
Wydawca: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe

Autorzy: Robert J. Wilson, Susan Kay, Stefano Ciavatta
Opublikowane w: Ecological Informatics, 2024, ISSN 1574-9541
Wydawca: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea

Autorzy: Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Opublikowane w: Marine Pollution Bulletin, Numer 207, 2024, ISSN 0025-326X
Wydawca: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic

Autorzy: Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Opublikowane w: Crossref, 2025, ISSN 1866-3516
Wydawca: Copernicus Publications
DOI: 10.5194/ESSD-2025-207

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters

Autorzy: Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Opublikowane w: Geoscientific Model Development, Numer 17, 2025, ISSN 1991-9603
Wydawca: Copernicus GmbH
DOI: 10.5194/GMD-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea

Autorzy: Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Opublikowane w: Ocean Science, 2024, ISSN 1812-0792
Wydawca: Copernicus Publications
DOI: 10.5194/OS-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020

Autorzy: Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Opublikowane w: Environmental Science &amp; Technology, 2024, ISSN 1520-5126
Wydawca: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea

Autorzy: Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Opublikowane w: Biogeosciences, 2023, ISSN 1726-4170
Wydawca: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic

Autorzy: Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Opublikowane w: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Wydawca: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations

Autorzy: S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Opublikowane w: Progress in Oceanography, Numer 231, 2025, ISSN 0079-6611
Wydawca: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103384

Progress in Oceanography

Autorzy: S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Opublikowane w: Progress in Oceanography, 2024, ISSN 0079-6611
Wydawca: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation

Autorzy: Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Opublikowane w: Ocean Dynamics, 2023, ISSN 1616-7228
Wydawca: Springer
DOI: 10.21203/RS.3.RS-4454996/V1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish

Autorzy: P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Opublikowane w: Earth's Future, Numer 12, 2024, ISSN 2328-4277
Wydawca: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies

Autorzy: Olivier Beauchard
Opublikowane w: Front. Mar. Sci., 2023, ISSN 2296-7745
Wydawca: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism

Autorzy: Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Opublikowane w: Ecological Modelling, Numer 493, 2024, ISSN 0304-3800
Wydawca: Elsevier BV
DOI: 10.1016/J.ECOLMODEL.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels

Autorzy: Michael C. Denes, Erik van Sebille
Opublikowane w: Journal of Open Source Software, Numer 9, 2024, ISSN 2475-9066
Wydawca: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation

Autorzy: Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Opublikowane w: Diversity and Distributions, 2024, ISSN 1472-4642
Wydawca: Wiley Online Library
DOI: 10.1111/DDI.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs

Autorzy: Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Opublikowane w: Marine Pollution Bulletin, Numer 211, 2025, ISSN 0025-326X
Wydawca: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability

Autorzy: Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Opublikowane w: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Wydawca: Nature Portfolio
DOI: 10.1038/S41559-024-02448-Y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models

Autorzy: Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Opublikowane w: Methods in Ecology and Evolution, Numer 16, 2025, ISSN 2041-210X
Wydawca: Wiley
DOI: 10.1111/2041-210X.14465

Other (15)

NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)

Autorzy: Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Opublikowane w: Zenodo, 2024
Wydawca: Zenodo

NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

Autorzy: Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
Opublikowane w: 2024
Wydawca: Zenodo
DOI: 10.5281/ZENODO.14551764

Description and guideline on the NECCTON-algo GitHub organization

Autorzy: Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autorzy: Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Opublikowane w: Zenodo, 2025
Wydawca: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM

Autorzy: Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Opublikowane w: Zenodo, 2024
Wydawca: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)

Autorzy: Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2)

Autorzy: Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Opublikowane w: Zenodo, 2025
Wydawca: Zenodo
DOI: 10.5281/ZENODO.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications

Autorzy: Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Opublikowane w: ESS Open Archive (Authorea, Inc.), 2023
Wydawca: American Geophysical Union
DOI: 10.22541/ESSOAR.167810427.75944849/V1

Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle

Autorzy: Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Opublikowane w: EGUsphere [preprint] (Copernicus GmbH) In Press, 2025
Wydawca: EGU Sphere
DOI: 10.5194/EGUSPHERE-2025-1465

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autorzy: Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Opublikowane w: Zenodo, 2025
Wydawca: Zenodo
DOI: 10.5281/ZENODO.14930390

Deliverable 3.2 Offline simulation tool

Autorzy: Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
Opublikowane w: 2025
Wydawca: Zendon
DOI: 10.5281/ZENODO.14826730

NECCTON: Technical specification of the benthic products (D6.1)

Autorzy: Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1)

Autorzy: Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1"

Autorzy: Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1)

Autorzy: Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/ZENODO.10057558

Thesis and dissertations (1)

Ecosystem modelling for the ocean decade - facing the challenge

Autorzy: Steenbeek, Jeroen
Opublikowane w: TDX (Tesis Doctorals en Xarxa), 2024
Wydawca: Zenodo
DOI: 10.13140/RG.2.2.20202.94403

Book chapters (1)

Modeling the high-impact-low-probability oil spills in the Mediterranean

Autorzy: Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Opublikowane w: 2024, ISSN 2975-0288
Wydawca: Firenze University Press