New Copernicus capability for trophic ocean networks

Información del proyecto

NECCTON

Identificador del acuerdo de subvención: 101081273

DOI

10.3030/101081273

Fecha de la firma de la CE 18 Octubre 2022

Fecha de inicio 1 Enero 2023

Fecha de finalización 31 Diciembre 2026

Financiado con arreglo a

• Digital, Industry and Space

Coste total

€ 8 527 590,00

Aportación de la UE

€ 8 527 588,75

Coordinado por

MERCATOR OCEAN
France

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (10)

D5.1 Technical specification of the LTL products

Informed by end user requirements, the report will describe the new LTL products to be delivered by WP5, including: a description of the products and all associated variables; and the geographic and temporal coverage, including resolution.

D8.1 Technical specification of the pollution and stressor products

This report will provide details on the pollution and stressors products: geographical coverage, list of variables, spatial and temporal resolution, system description.

D6.1 Technical specification of the benthic products

This document will describe the new benthic products delivered by WP6 in terms of resolution, frequency of availability, units and models that has been used for their production.

D5.2 Report on all the integrated pelagic model developments in T5.2.1-4

The report will describe changes made to the LTL model systems of NECCTON and the simulation configurations that will support the generation of the new LTL products.

D4.1 Github organisation and guide of good practice

This document will describe the structure of the GitHub repositories used to distribute internally and externally the codes associated to WP4.

D8.3 Report on developments of tools for mapping integrated pressures, exposure, and risk in T8.4

This document will outline methods and results of multiple environmental pressures mapping and vulnerability of marine ecosystems and target species

D2.1 Plan for exploitation, dissemination and communication

The Plan for exploitation, dissemination and communication (PEDCR) will describe the consortium strategy and planned actions related to the protection, dissemination, communication and exploitation of NECCTON research, innovation and products. This preliminary PEDCR will be updated during the project, to maintain alignment with evolving stakeholder needs and to maximize impact.

D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

This document will report on the assessment of PRISMA L2 hyperspectral reflectance for selected open ocean sites, using autonomous in situ radiometry. The transferability to future hyperspectral sensors will be evaluated.

D7.1 Technical specification of the HTL products

The report will describe how the different HTL models will provide the identified HTL products and services, including technical details from T7.1

D3.1 Best practices for implementing new BGC process modules in CMEMS/FABM

This document will describe how to implement process-based biogeochemical models into the Fortran-based Framework for Aquatic Biogeochemical Models (FABM). As part of this it will document new Application programming Interfaces (APIs) introduced to support the CMEMS suite of BGC models. Parts of the document will be added to the public FABM wiki at https://fabm.net/wiki. The codebase that provides the described functionality will be available from its public FABM repository at https://fabm.net/code

Other (1)

D3.2 Offline simulation tool

This document will describe how to obtain, install and use the newly developed offline simulation tool, which performs simulations with FABM-based biogeochemical models driven with CMEMS model outputs. The tool will be available from a public GitHub repository; usage instructions will be available from an accompanying online wiki. The deliverable document is therefore expected to be brief and point primarily to these online resources.

Data Management Plan (1)

D1.1 Initial Data Management Plan

The initial data management plan will describe the preliminary plan for the cycle for the data to be collected, processed and/or generated by NECCTON, including the description of the management procedure, storage infrastructures and standards that will be used during the project

Publicaciones

Peer reviewed articles (23)

Determination of biogeochemical properties in sea waters using the inversion of the three-stream irradiance model

Autores: Paolo Lazzari, Mirna Gharbi Dit Kacem, Eva Álvarez, Ilya Chernov, Vincenzo Vellucci
Publicado en: Scientific Reports, Edición 14, 2024, ISSN 2045-2322
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-71457-5

Investigating ecosystem connections in the shelf sea environment using complex networks

Autores: Higgs, Ieuan; Skákala, Jozef; Bannister, Ross; Carrassi, Alberto; Ciavatta, Stefano
Publicado en: Biogeosciences., 2023, ISSN 1726-4170
Editor: European Giosciences union
DOI: 10.5194/egusphere-2023-475

Global characterization of modelled micronekton in biophysically defined provinces

Autores: S. Albernhe, T. Gorgues, P. Lehodey, C. Menkes, O. Titaud, S. Magon De La Giclais, A. Conchon
Publicado en: Progress in Oceanography, Edición 229, 2024, ISSN 0079-6611
Editor: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103370

Trawling-induced change in benthic effect trait composition – A multiple case study

Autores: Olivier Beauchard, Clare Bradshaw, Stefan Bolam, Justin Tiano, Clément Garcia, Emil De Borger, Pascal Laffargue, Mats Blomqvist, Irini Tsikopoulou, Nadia K. Papadopoulou, Christopher J. Smith, Jolien Claes, Karline Soetaert, Marija Sciberras
Publicado en: Frontiers in Marine Science, 2023, ISSN 2296-7745
Editor: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1303909

Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe

Autores: Robert J. Wilson, Susan Kay, Stefano Ciavatta
Publicado en: Ecological Informatics, 2024, ISSN 1574-9541
Editor: Elsevier
DOI: 10.1016/j.ecoinf.2024.102537

Partial recovery of macrozoobenthos on the northwestern shelf of the Black Sea

Autores: Séverine Chevalier, Olivier Beauchard, Adrian Teacă, Karline Soetaert, Marilaure Grégoire
Publicado en: Marine Pollution Bulletin, Edición 207, 2024, ISSN 0025-326X
Editor: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.116857

Long-term plankton and environmental monitoring dataset from the Marine Protected Area of the Iroise Marine Natural Park (2010–2023) in the Iroise Sea, North Atlantic

Autores: Laetitia Drago; Caroline Cailliau; Patrick Pouline; Beatriz Beker; Laëtitia Jalabert; Jean-Baptiste Romagnan; Sakina-Dorothée Ayata
Publicado en: Crossref, 2025, ISSN 1866-3516
Editor: Copernicus Publications
DOI: 10.5194/ESSD-2025-207

EAT v1.0.0: a 1D test bed for physical–biogeochemical data assimilation in natural waters

Autores: Jorn Bruggeman, Karsten Bolding, Lars Nerger, Anna Teruzzi, Simone Spada, Jozef Skákala, Stefano Ciavatta
Publicado en: Geoscientific Model Development, Edición 17, 2025, ISSN 1991-9603
Editor: Copernicus GmbH
DOI: 10.5194/GMD-17-5619-2024

Ensemble reconstruction of missing satellite data using a denoising diffusion model: application to chlorophyll <i>a</i> concentration in the Black Sea

Autores: Alexander Barth; Julien Brajard; Aida Alvera-Azcárate; Bayoumy Mohamed; Charles Troupin; Jean-Marie Beckers
Publicado en: Ocean Science, 2024, ISSN 1812-0792
Editor: Copernicus Publications
DOI: 10.5194/OS-20-1567-2024

Global Gridded Emission Inventory of Organophosphate Flame Retardants from 2010 to 2020

Autores: Haibo Ma; Chao Wang; Huabing Suo; Yandi Huang; Yuanhui Huo; Gang Yang; Yu Yan; Tao Huang; Hong Gao; Jianmin Ma; Zhiyong Xie
Publicado en: Environmental Science &amp; Technology, 2024, ISSN 1520-5126
Editor: American Chemical Society
DOI: 10.1021/ACS.EST.4C06504

Chromophoric dissolved organic matter dynamics revealed through the optimization of an optical–biogeochemical model in the northwestern Mediterranean Sea

Autores: Álvarez E, Cossarini G, Teruzzi A, Bruggeman J, Bolding K, Ciavatta S, Vellucci V, D'Ortenzio F, Antoine D, Lazzari P.
Publicado en: Biogeosciences, 2023, ISSN 1726-4170
Editor: European Geosciences Union
DOI: 10.5194/bg-20-4591-2023

Food chain without giants: modelling the trophic impact of bowhead whaling on little auk populations in the Atlantic Arctic

Autores: Amaury Thepault; Ana S. L. Rodrigues; Laetitia Drago; David Grémillet
Publicado en: Proceedings of the Royal Society B: Biological Sciences, 2024, ISSN 1471-2954
Editor: Royal society
DOI: 10.1098/rspb.2024.1183

Control of simulated ocean ecosystem indicators by biogeochemical observations

Autores: S. Ciavatta, P. Lazzari, E. Álvarez, L. Bertino, K. Bolding, J. Bruggeman, A. Capet, G. Cossarini, F. Daryabor, L. Nerger, M. Popov, J. Skákala, S. Spada, A. Teruzzi, T. Wakamatsu, V.Ç. Yumruktepe, P. Brasseur
Publicado en: Progress in Oceanography, Edición 231, 2025, ISSN 0079-6611
Editor: Elsevier BV
DOI: 10.1016/J.POCEAN.2024.103384

Progress in Oceanography

Autores: S. Albernhe; T. Gorgues; P. Lehodey; C. Menkes; O. Titaud; S. Magon De La Giclais; A. Conchon
Publicado en: Progress in Oceanography, 2024, ISSN 0079-6611
Editor: Elsevier
DOI: 10.1016/J.POCEAN.2024.103370

Hybrid covariance super-resolution data assimilation

Autores: Sébastien Barthélémy; Julien Brajard; Laurent Bertino; François Counillon
Publicado en: Ocean Dynamics, 2023, ISSN 1616-7228
Editor: Springer
DOI: 10.21203/RS.3.RS-4454996/V1

Estimating Fishing Exploitation Rates to Simulate Global Catches and Biomass Changes of Pelagic and Demersal Fish

Autores: P. D. van Denderen, N. Jacobsen, K. H. Andersen, J. L. Blanchard, C. Novaglio, C. A. Stock, C. M. Petrik
Publicado en: Earth's Future, Edición 12, 2024, ISSN 2328-4277
Editor: American Geophysical Union (AGU)
DOI: 10.1029/2024EF004604

The importance of trait selection on the meaning of functional diversity in benthic studies

Autores: Olivier Beauchard
Publicado en: Front. Mar. Sci., 2023, ISSN 2296-7745
Editor: Frontiers Media S.A
DOI: 10.3389/fmars.2023.1195595

The role of squid for food web structure and community-level metabolism

Autores: Rémy Denéchère, P. Daniël van Denderen, Ken H. Andersen
Publicado en: Ecological Modelling, Edición 493, 2024, ISSN 0304-3800
Editor: Elsevier BV
DOI: 10.1016/J.ECOLMODEL.2024.110729

plasticparcels: A python package for marine plasticdispersal simulations and parameterisation development usingparcels

Autores: Michael C. Denes, Erik van Sebille
Publicado en: Journal of Open Source Software, Edición 9, 2024, ISSN 2475-9066
Editor: The Open Journal
DOI: 10.21105/joss.07094

Identifying Gaps in the Protection of Mediterranean Seagrass Habitats Using Network‐Based Prioritisation

Autores: Damiano Baldan; Yohann Chauvier‐Mendes; Fabrizio Gianni; Gianpiero Cossarini; Vinko Bandelj
Publicado en: Diversity and Distributions, 2024, ISSN 1472-4642
Editor: Wiley Online Library
DOI: 10.1111/DDI.13922

The role of seagrass meadows (Posidonia oceanica) as microplastics sink and vector to benthic food webs

Autores: Dionysia Rigatou, Vasilis Gerakaris, Nikoletta Digka, Argyro Adamopoulou, Danae Patsiou, Yannis Hatzonikolakis, Kostas Tsiaras, Catherine Tsangaris, Christina Zeri, Helen Kaberi, Dionysios E. Raitsos
Publicado en: Marine Pollution Bulletin, Edición 211, 2025, ISSN 0025-326X
Editor: Elsevier BV
DOI: 10.1016/j.marpolbul.2024.117420

Aquatic deoxygenation as a planetary boundary and key regulator of Earth system stability

Autores: Kevin C. Rose; Erica M. Ferrer; Stephen R. Carpenter; Sean A. Crowe; Sarah C. Donelan; Véronique C. Garçon; Marilaure Grégoire; Stephen F. Jane; Peter R. Leavitt; Lisa A. Levin; Andreas Oschlies; Denise Breitburg
Publicado en: Nature Ecology and Evolution, 2024, ISSN 2397-334X
Editor: Nature Portfolio
DOI: 10.1038/S41559-024-02448-Y

<scp>FEISTY</scp> Fortran library and R package to integrate fish and fisheries with biogeochemical models

Autores: Yixin Zhao, P. Daniël van Denderen, Rémy Denéchère, Jonathan E. Falciani, Nis S. Jacobsen, Themistoklis Konstantinopoulos, Daniel Ottmann, Colleen M. Petrik, Karline Soetaert, Charles A. Stock, Ken H. Andersen
Publicado en: Methods in Ecology and Evolution, Edición 16, 2025, ISSN 2041-210X
Editor: Wiley
DOI: 10.1111/2041-210X.14465

Other (15)

NECCTON: Tools of dissemination and visualization of the NECCTON products (D2.2)

Autores: Romero, L., Di Medio, E., Moreno, P., & Marsà, A.
Publicado en: Zenodo, 2024
Editor: Zenodo

NECCTON D4.2 Assessment of L2 PRISMA production chain, outputs and transferability

Autores: Braga, Federica; Profeti, Giuliana; Lazzari, Paolo; Álvarez, Eva; Marco Scarpa, Gian; Manfè, Giorgia; Gonzalez Vilas, Luis; Skakala, Jozef; Brando, Vittorio
Publicado en: 2024
Editor: Zenodo
DOI: 10.5281/ZENODO.14551764

Description and guideline on the NECCTON-algo GitHub organization

Autores: Brajard J, Barth A, Ayata, S, Barga F, Lazzari P, Greenberg D
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/zenodo.7867231

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autores: Canu, Donata; Rosati, Ginevra; Denes, Michael; van Sebille, Erik; Liubartseva, Svitlana; Beauchard, Olivier; Soetaert, Karline; Tamvakis, Ioannis; Bieser, Johannes; Zhiyong, Xie
Publicado en: Zenodo, 2025
Editor: Zenodo
DOI: 10.5281/zenodo.14930390

NECCTON Best practices for implementing new BGC process modules in CMEMS/FABM

Autores: Bruggeman J, Yumruktepe VC, Lazzari P, Albernhe S, Daewel U, Schnedler-Meyer NA,
Publicado en: Zenodo, 2024
Editor: Zenodo
DOI: 10.5281/zenodo.10600259

NECCTON: Technical specification of the pelagic lower trophic level products (D5.1)

Autores: Clark J, Kay S, Samuelsen A, Albernhe S, Butenschön M, Powley H, Cossarini G, Lazzari P, Hahn J, Braga F, Perruche C, Grégoire M,
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/zenodo.10057817

NECCTON Integrated pelagic model developments (D5.2)

Autores: Clark, James; Samuelson, Annette; Yumruktepe, Çağlar; Albernhe, Sarah; Lindenthal, Anja; Hahn, Josefine; Belharet, Mokrane; Millington, Rebecca; Bonino, Giulia; Choblet, Mathurin; Powley, Helen; Galli, Giovanni; Cossarini, Gianpiero; Lazzari, Paolo; Alvarez, Eva; Macé, Loïc; Skakala, Jozef
Publicado en: Zenodo, 2025
Editor: Zenodo
DOI: 10.5281/ZENODO.14926411

A multi-model selection approach for statistical downscaling and bias correction of Earth System Model outputs for regional impact applications

Autores: Ricardo Oliveros-Ramos; Yunne-Jai Shin; Dimitri Gutierrez; Verena M Trenkel
Publicado en: ESS Open Archive (Authorea, Inc.), 2023
Editor: American Geophysical Union
DOI: 10.22541/ESSOAR.167810427.75944849/V1

Including different mesozooplankton feeding strategies in a biogeochemical ocean model impacts global ocean biomass and carbon cycle

Autores: Lisa Di Matteo; Fabio Benedetti; Sakina-Dorothée Ayata; Olivier Aumont
Publicado en: EGUsphere [preprint] (Copernicus GmbH) In Press, 2025
Editor: EGU Sphere
DOI: 10.5194/EGUSPHERE-2025-1465

NECCTON Report on integrated modelling of pollutants and single pressures D8.2

Autores: Canu D., Rosati G., Denes M., van Sebille E., Liubartseva S., Beauchard O., Soetaert K., Tamvakis I., Bieser J., Xie Z.
Publicado en: Zenodo, 2025
Editor: Zenodo
DOI: 10.5281/ZENODO.14930390

Deliverable 3.2 Offline simulation tool

Autores: Bruggeman, Jorn; Gao, Shuang; Wakamatsu, Tsuyoshi; Partridge, Dale
Publicado en: 2025
Editor: Zendon
DOI: 10.5281/ZENODO.14826730

NECCTON: Technical specification of the benthic products (D6.1)

Autores: Grégoire M, Soetaert K, Lessin G, Choblet M, Mudde Q, Cossarini G, Bandelj V, Butenschön M, Hahn J, Staneva J,
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/zenodo.10057895

NECCTON Technical specification of the pollutants and stressors products (D8.1)

Autores: Canu D, Rosati G, Triantafyllou G, Van Sebille E, Denes M, Liubartseva S, Bieser J, Xie Z, Beauchard O, Soetaert K, Galli G
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/zenodo.10058177

"NECCTON ""Initial data management plan (DMP)"" D1.1"

Autores: Ciavatta S, Biardeau A, Giunta V, Derval C, Romero L, Braga F
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/zenodo.8099395

NECCTON: Technical specification of the Higher Trophic Level products (D7.1)

Autores: Trenkel V, Grégoire M, Lehodey P, Travers-Trolet M, Daewel U, Vijayakumaran V, Pérez-Jorge S, Andersen KH, Huret M, Powley H, Sailley S, Tsiaras K, Steenbeek J, Conchon A
Publicado en: Zenodo, 2023
Editor: Zenodo
DOI: 10.5281/ZENODO.10057558

Thesis and dissertations (1)

Ecosystem modelling for the ocean decade - facing the challenge

Autores: Steenbeek, Jeroen
Publicado en: TDX (Tesis Doctorals en Xarxa), 2024
Editor: Zenodo
DOI: 10.13140/RG.2.2.20202.94403

Book chapters (1)

Modeling the high-impact-low-probability oil spills in the Mediterranean

Autores: Liubartseva, S., Coppini, G., Daniel, P., Hoxhaj, M.
Publicado en: 2024, ISSN 2975-0288
Editor: Firenze University Press