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Strengthening Computational Biodiversity Research in Greece

Deliverables

Separate Project/BCG website

Set up of initial separate web page for BCG and the project completed.

Publications

Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region

Author(s): Panayiota Kotsakiozi, Aglaia Antoniou, Nikolaos Psonis, Κostas Sagonas, Emmanouela Karameta, Çetin Ilgaz, Yusuf Kumlutaş, Aziz Avcı, Daniel Jablonski, Diego Darriba, Alexandros Stamatakis, Petros Lymberakis, Nikos Poulakakis
Published in: Molecular Phylogenetics and Evolution, Issue 197:108091, 2024, ISSN 1095-9513
Publisher: Elsevier science
DOI: 10.1016/j.ympev.2024.108091

Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty

Author(s): Anastasis Togkousidis, Oleksiy M Kozlov, Julia Haag, Dimitri Höhler, Alexandros Stamatakis
Published in: Molecular Biology and Evolution, Issue Volume 40, Issue 10, 2023, ISSN 1537-1719
Publisher: Oxford Academic
DOI: 10.1093/molbev/msad227

Simulations of Sequence Evolution: How (Un)realistic They Are and Why

Author(s): Johanna Trost, Julia Haag, Dimitri Höhler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau Author Notes
Published in: Molecular Biology and Evolution,, Issue Volume 41, Issue 1, 2024, ISSN 1537-1719
Publisher: Oxford Academic
DOI: 10.1093/molbev/msad277

AleRax: a tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss

Author(s): Benoit Morel, Tom A Williams, Alexandros Stamatakis, Gergely J Szöllősi
Published in: Bioinformatics, Issue Volume 40, Issue 4, 2024, ISSN 1367-4811
Publisher: Oxford Academic
DOI: 10.1093/bioinformatics/btae162

EcoFreq: Compute with Cheaper, Cleaner Energy via Carbon-aware Power Scaling

Author(s): Alexey Kozlov, Alexandros Stamatakis
Published in: ISC High Performance 2024 Research Paper Proceedings, Issue pp. 1-12, 2024, ISBN 978-3-9826336-0-2
Publisher: Prometeus GmbH
DOI: 10.23919/ISC.2024.10528928.

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