Strengthening Computational Biodiversity Research in Greece

Project Information

Comp-Biodiv-GR

Grant agreement ID: 101087081

DOI

10.3030/101087081

EC signature date 8 November 2022

Start date 1 January 2023

End date 31 December 2027

Funded under

• Widening participation and spreading excellence

Total cost

€ 2 400 000,00

EU contribution

€ 2 400 000,00

Coordinated by

IDRYMA TECHNOLOGIAS KAI EREVNAS
Greece

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Websites, patent fillings, videos etc. (1)

Separate Project/BCG website

Set up of initial separate web page for BCG and the project completed.

Publications

Peer reviewed articles (10)

Cryptic diversity and phylogeographic patterns of Mediodactylus species in the Eastern Mediterranean region

Author(s): Panayiota Kotsakiozi, Aglaia Antoniou, Nikolaos Psonis, Κostas Sagonas, Emmanouela Karameta, Çetin Ilgaz, Yusuf Kumlutaş, Aziz Avcı, Daniel Jablonski, Diego Darriba, Alexandros Stamatakis, Petros Lymberakis, Nikos Poulakakis
Published in: Molecular Phylogenetics and Evolution, Issue 197:108091, 2024, ISSN 1095-9513
Publisher: Elsevier science
DOI: 10.1016/j.ympev.2024.108091

Complexity of avian evolution revealed by family-level genomes

Author(s): Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A. Duchêne, Qi Fang, Yuan Deng, Alexey Kozlov, Alexandros Stamatakis, Santiago Claramunt, Jacqueline M. T. Nguyen, Simon Y. W. Ho, Brant C. Faircloth, Julia Haag, Peter Houde,
Published in: Nature, 2024, ISSN 1476-4687
Publisher: Springer nature
DOI: 10.1038/s41586-024-07323-1

The Free Lunch is not over yet – Systematic Exploration of Numerical Thresholds in Phylogenetic Inference

Author(s): Julia Haag; Lukas Hübner; Alexey M. Kozlov; Alexandros Stamatakis
Published in: Bioinformatics Advances, 2022, ISSN 2635-0041
Publisher: Oxford Academics
DOI: 10.1101/2022.07.13.499893

Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty

Author(s): Anastasis Togkousidis, Oleksiy M Kozlov, Julia Haag, Dimitri Höhler, Alexandros Stamatakis
Published in: Molecular Biology and Evolution, Issue Volume 40, Issue 10, 2023, ISSN 1537-1719
Publisher: Oxford Academic
DOI: 10.1093/molbev/msad227

Parameter Estimation and Species Tree Rooting Using ALE and GeneRax

Author(s): Tom A Williams; Adrián A Davín; Benoit Morel; Lénárd L Szánthó; Anja Spang; Alexandros Stamatakis; Philip Hugenholtz; Gergely J Szöllősi
Published in: Genome Biology and Evolution, 2023, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.5445/ir/1000161500

Simulations of Sequence Evolution: How (Un)realistic They Are and Why

Author(s): Johanna Trost, Julia Haag, Dimitri Höhler, Laurent Jacob, Alexandros Stamatakis, Bastien Boussau Author Notes
Published in: Molecular Biology and Evolution,, Issue Volume 41, Issue 1, 2024, ISSN 1537-1719
Publisher: Oxford Academic
DOI: 10.1093/molbev/msad277

Identification of the 18 World War II executed citizens of Adele, Rethymnon, Crete using an ancient DNA approach and low coverage genomes

Author(s): Psonis, Nikolaos and Vassou, Despoina and Nafplioti, Argyro and Tabakaki, Eugenia and Pavlidis, Pavlos and Stamatakis, Alexandros and Poulakakis, Nikos,
Published in: Forensic Science International: Genetics, 2023, ISSN 1556-5068
Publisher: Elsevier
DOI: 10.2139/SSRN.4647981

Phylourny: efficiently calculating elimination tournament win probabilities via phylogenetic methods

Author(s): Ben Bettisworth, Alexander I. Jordan & Alexandros Stamatakis
Published in: Statistics and Computing, 2023, ISSN 0960-3174
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11222-023-10246-y

AleRax: a tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss

Author(s): Benoit Morel, Tom A Williams, Alexandros Stamatakis, Gergely J Szöllősi
Published in: Bioinformatics, Issue Volume 40, Issue 4, 2024, ISSN 1367-4811
Publisher: Oxford Academic
DOI: 10.1093/bioinformatics/btae162

The power and limitations of species tree-aware phylogenetics

Author(s): Tom A. Williams, Adrian A. Davin, Benoit Morel, Lenard L. Szantho, Anja Spang, Alexandros Stamatakis, Philip Hugenholtz, Gergely J. Szollosi
Published in: Evolutionary Biology, 2023, ISSN 2692-8205
Publisher: biorXiv
DOI: 10.1101/2023.03.17.533068

Conference proceedings (3)

Parallel Inference of Phylogenetic Stands with Gentrius

Author(s): Anastasis Togkousidis; Olga Chernomor; Alexandros Stamatakis
Published in: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2023, ISBN 979-8-3503-1199-0
Publisher: IEEEXplore
DOI: 10.1109/IPDPSW59300.2023.00035

Are Sounds Sound for Phylogenetic Reconstruction?

Author(s): Luise Häuser, Gerhard Jäger, Taraka Rama, Johann-Mattis List, Alexandros Stamatakis
Published in: -, 2024, ISSN 2331-8422
Publisher: Arxiv

EcoFreq: Compute with Cheaper, Cleaner Energy via Carbon-aware Power Scaling

Author(s): Alexey Kozlov, Alexandros Stamatakis
Published in: ISC High Performance 2024 Research Paper Proceedings, Issue pp. 1-12, 2024, ISBN 978-3-9826336-0-2
Publisher: Prometeus GmbH
DOI: 10.23919/ISC.2024.10528928.

Other (2)

Pandora: A Tool to Estimate Dimensionality Reduction Stability of Genotype Data

Author(s): Julia Haag, Alexander I. Jordan, Alexandros Stamatakis
Published in: biorXiv preprint, 2024, ISSN 2692-8205
Publisher: bioRxiv

Predicting Phylogenetic Bootstrap Values via Machine Learning

Author(s): Julius Wiegert, Julia Haag, Dimitri Hoehler, Alexandros Stamatakis
Published in: bioRxiv preprint, 2024, ISSN 2692-8205
Publisher: bioRxiv