Artificial RNA regulators to probe, control, and design gene regulatory networks in bacteria

Project Information

ArtRNA

Grant agreement ID: 101088027

DOI

10.3030/101088027

EC signature date 31 March 2023

Start date 1 November 2023

End date 31 October 2028

Funded under

• European Research Council (ERC)

Total cost

€ 1 999 913,00

EU contribution

€ 1 999 913,00

Coordinated by

FRIEDRICH-SCHILLER-UNIVERSITÄT JENA
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Data Management Plan (1)

Data Management Plan

Drafting of Data Management Plan

Publications

Peer reviewed articles (10)

An RNA sponge directs the transition from feast to famine in Caulobacter crescentus

Author(s): Laura N. Vogt, Manuel Velasco Gomariz, Malte Siemers, Kai Papenfort, Kathrin S. Fröhlich
Published in: Nature Communications, Issue 16, 2025, ISSN 2041-1723
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-65274-1

ProQ-associated small RNAs control motility in <i>Vibrio cholerae</i>

Author(s): Rabea Ghandour; Daniel Devlitsarov; Phillip Popp; Sahar Melamed; Michaela Huber; Malte Siemers; Thomas Krüger; Olaf Kniemeyer; Andreas Klingl; Axel A Brakhage; Marc Erhardt; Kai Papenfort
Published in: Nucleic Acids Research, 2024, ISSN 1362-4962
Publisher: Oxford Academic
DOI: 10.18452/33833

Phage–phage competition and biofilms affect interactions between two virulent bacteriophages and <i>Pseudomonas aeruginosa</i>

Author(s): Bürkle, Magdalena; Korf, Imke; Lippegaus, Anne; Krautwurst, Sebastian; Rohde, Christine; Weissfuss, Chantal; Nouailles, Geraldine; Tene, Xavière Menatong; Gaborieau, Baptiste; Ghigo, Jean-Marc; Ricard, Jean-Damien; Hocke, Andreas; Papenfort, Kai; Debarbieux, Laurent; Witzenrath, Martin; Wienhold, Sandra-Maria; Krishnamoorthy, Gopinath
Published in: The ISME Journal, 2025, ISSN 1751-7370
Publisher: Springer Nature
DOI: 10.1093/ISMEJO/WRAF065

ChimericFragments: Computation, analysis, and visualization of global RNA networks

Author(s): Malte Siemers; Anne Lippegaus; Kai Papenfort
Published in: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Publisher: Oxford Academic
DOI: 10.1093/NARGAB/LQAE035

Insights into bacterial metabolism from small RNAs

Author(s): Kai Papenfort; Gisela Storz
Published in: Cell Chemical Biology, 2024, ISSN 2451-9448
Publisher: Elsevier
DOI: 10.1016/J.CHEMBIOL.2024.07.002

Quorum sensing employs a dual regulatory mechanism to repress T3SS gene expression

Author(s): Payel Paul; Ram Podicheti; Logan J. Geyman; Elizabeth N. Baker; Kai Papenfort; Douglas B. Rusch; Julia C. van Kessel
Published in: mBio, 2025, ISSN 2150-7511
Publisher: ASM
DOI: 10.1128/MBIO.00106-25

Small RNAs direct attack and defense mechanisms in a quorum sensing phage and its host

Author(s): Marcel Sprenger, Malte Siemers, Sebastian Krautwurst, Kai Papenfort
Published in: Cell Host &amp; Microbe, Issue 32, 2024, ISSN 1931-3128
Publisher: Elsevier BV
DOI: 10.1016/J.CHOM.2024.03.010

Extracellular Vesicles From <i>Xylella fastidiosa</i> Carry sRNAs and Genomic Islands, Suggesting Roles in Recipient Cells

Author(s): Alessa Ruf; Patrick Blumenkamp; Christina Ludwig; Anne Lippegaus; Andreas Brachmann; Andreas Klingl; Alexander Goesmann; Karina Brinkrolf; Kai Papenfort; Silke Robatzek
Published in: Journal of Extracellular Vesicles, 2025, ISSN 2001-3078
Publisher: WILEY
DOI: 10.1002/JEV2.70102

Genome-wide profiling of Hfq-bound RNAs reveals the iron-responsive small RNA RusT in <i>Caulobacter crescentus</i>

Author(s): Vogt, Laura N; Panis, Gaël; Schäpers, Anna; Peschek, Nikolai; Huber, Michaela; Papenfort, Kai; Viollier, Patrick; Fröhlich, Kathrin S
Published in: mBio, 2024, ISSN 2150-7511
Publisher: ASM
DOI: 10.1128/MBIO.03153-23

The global RNA–RNA interactome of<i>Klebsiella pneumoniae</i>unveils a small RNA regulator of cell division

Author(s): Eric Ruhland; Malte Siemers; Ruman Gerst; Felix Späth; Laura Nicole Vogt; Marc Thilo Figge; Kai Papenfort; Kathrin Sophie Fröhlich
Published in: Proceedings of the National Academy of Sciences, 2024, ISSN 1091-6490
Publisher: National Academy of Sciences
DOI: 10.1073/PNAS.2317322121