Nanopore sequencing of cell-free DNA for the sensitive detection, molecular profiling and monitoring of childhood cancers

Informazioni relative al progetto

PaedsSeq

ID dell’accordo di sovvenzione: 101106070

DOI

10.3030/101106070

Progetto chiuso

Data della firma CE 3 Aprile 2023

Data di avvio 1 Giugno 2023

Data di completamento 31 Maggio 2025

Finanziato da

• Marie Skłodowska-Curie Actions (MSCA)

Costo totale

Nessun dato

Contributo UE

€ 220 908,48

Coordinato da

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Germany

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (1)

Communication, Dissemination and Exploitation Plan

The plan describes the planned measures to maximize the impact of the project, including the dissemination and exploitation measures that are planned, and the target group(s) addressed. Regarding communication measures and public engagement strategy, the aim is to inform and reach out to society and show the activities performed, and the use and the benefits the project will have for citizens.

Data Management Plan (1)

Data Management Plan

The Data Management Plan describes the data management life cycle for all data sets that will be collected processed or generated by the action It is a document describing what data will be collected processed or generated and following what methodology and standards whether and how this data will be shared andor made open and how it will be curated and preserved

Pubblicazioni

Peer reviewed articles (4)

SAVANA: reliable analysis of somatic structural variants and copy number aberrations using long-read sequencing

Autori: Hillary Elrick, Carolin M. Sauer, Jose Espejo Valle-Inclan, Katherine Trevers, Melanie Tanguy, Sonia Zumalave, Solange De Noon, Francesc Muyas, Rita Cascão, Angela Afonso, Alistair G. Rust, Fernanda Amary, Roberto Tirabosco, Adam Giess, Timothy Freeman, Alona Sosinsky, Katherine Piculell, David T. Miller, Claudia C. Faria, Greg Elgar, Adrienne M. Flanagan, Isidro Cortes-Ciriano
Pubblicato in: Nature Methods, Numero 22, 2025, ISSN 1548-7091
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41592-025-02708-0

Stratified Medicine Paediatrics: Cell free DNA and serial tumour sequencing identifies subtype specific cancer evolution and epigenetic states

Autori: Sally L. George, Claire Lynn, Reda Stankunaite, Debbie Hughes, Carolin M. Sauer, Jane Chalker, Saira Waqar Ahmed, Minou Oostveen, Paula Z. Proszek, Lina Yuan, Ridwan Shaikh, Sabri Jamal, Ama Brew, Jennifer Tall, Tony Rogers, Steven C. Clifford, Josef Vormoor, Janet M. Shipley, Deborah A. Tweddle, Chris Jones, Courtney Willis, G.A. Amos Burke, Aditi Vedi, Lisa Howell, Robert Johnston, Helen Rees, Madeleine Adams, Angela Jesudason, Milind Ronghe, Martin Elliott, Emma Ross, Guy Makin, Quentin Campbell-Hewson, Richard G. Grundy, Jennifer Turnbull, Shaun Wilson, Victoria Lee, Juliet C. Gray, Sara Stoneham, Susanne A. Gatz, Lynley V. Marshall, Paola Angelini, John Anderson, George D. Cresswell, Trevor A. Graham, Bissan Al-Lazikani, Isidro Cortes-Ciriano, Pamela Kearns, J. Ciaran Hutchinson, Darren Hargrave, Thomas S. Jacques, Michael Hubank, Andrea Sottoriva, Louis Chesler
Pubblicato in: Cancer Discovery, 2024, ISSN 2159-8274
Editore: American Association for Cancer Research (AACR)
DOI: 10.1158/2159-8290.CD-24-0916

SAVANA: reliable analysis of somatic structural variants and copy number aberrations in clinical samples using long-read sequencing

Autori: Hillary Elrick; Carolin M Sauer; Jose Espejo Valle-Inclan; Katherine Trevers; Melanie Tanguy; Sonia Zumalave; Solange De Noon; Francesc Muyas; Rita Cascao; Angela Afonso; Fernanda Amary; Roberto Tirabosco; Adam Giess; Timothy Freeman; Alona Sosinsky; Katherine Piculell; David T Miller; Claudia C Faria; Greg Elgar; Adrienne M Flanagan; Isidro Cortes-Ciriano
Pubblicato in: Crossref, 2024, ISSN 2692-8205
Editore: bioRxiv
DOI: 10.21203/RS.3.RS-4870639/V1

Ongoing chromothripsis underpins osteosarcoma genome complexity and clonal evolution

Autori: Jose Espejo Valle-Inclan, Solange De Noon, Katherine Trevers, Hillary Elrick, Ianthe A.E.M. van Belzen, Sonia Zumalave, Carolin M. Sauer, Mélanie Tanguy, Thomas Butters, Francesc Muyas, Alistair G. Rust, Fernanda Amary, Roberto Tirabosco, Adam Giess, Alona Sosinsky, Greg Elgar, Adrienne M. Flanagan, Isidro Cortés-Ciriano
Pubblicato in: Cell, 2025, ISSN 0092-8674
Editore: Elsevier BV
DOI: 10.1016/j.cell.2024.12.005