Comparative signature of Marburg virus cell activation as a blueprint for the identification of antiviral targets against newly emerging viruses

Informazioni relative al progetto

COMBINE

ID dell’accordo di sovvenzione: 101191739

DOI

10.3030/101191739

Data della firma CE 7 Novembre 2024

Data di avvio 1 Gennaio 2025

Data di completamento 31 Dicembre 2029

Finanziato da

• Health

Costo totale

€ 7 285 043,75

Contributo UE

€ 7 285 043,75

Coordinato da

HELMHOLTZ-ZENTRUM FUR INFEKTIONSFORSCHUNG GMBH
Germany

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Peer reviewed articles (11)

iDeepLC: Chemical Structure Information Yields Improved Retention Time Prediction of Peptides with Unseen Modifications

Autori: Alireza Nameni, Arthur Declercq, Ralf Gabriels, Robbe Devreese, Sven Degroeve, Amélie De Maesschalck, Maarten Dhaenens, Cristina Chiva, Eduard Sabidó, Lennart Martens, Robbin Bouwmeester
Pubblicato in: Analytical Chemistry, Numero 98, 2026, ISSN 0003-2700
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.ANALCHEM.5C08017

The <i>Escherichia coli</i> PeptideAtlas Build: Characterizing the Observed <i>Escherichia coli</i> Pan-Proteome and Its Post-Translational Modifications

Autori: Caroline Jachmann, Zhi Sun, Kevin Velghe, Florence Arsène-Ploetze, Aurélie Hirschler, Jasper Zuallaert, Christine Carapito, Robbin Bouwmeester, Kay Nieselt, Eric W. Deutsch, Lennart Martens, Ralf Gabriels, Tim Van Den Bossche
Pubblicato in: Journal of Proteome Research, Numero 25, 2026, ISSN 1535-3893
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.JPROTEOME.5C00902

msqrob2TMT: Robust Linear Mixed Models for Inferring Differential Abundant Proteins in Labeled Experiments With Arbitrarily Complex Design

Autori: Stijn Vandenbulcke, Christophe Vanderaa, Oliver Crook, Lennart Martens, Lieven Clement
Pubblicato in: Molecular &amp; Cellular Proteomics, Numero 24, 2025, ISSN 1535-9476
Editore: Elsevier BV
DOI: 10.1016/J.MCPRO.2025.101002

Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups

Autori: Robbin Bouwmeester, Alireza Nameni, Arthur Declercq, Robbe Devreese, Kevin Velghe, Vladimir Gorshkov, Pelayo A. Penanes, Frank Kjeldsen, Magali Rompais, Christine Carapito, Ralf Gabriels, Lennart Martens
Pubblicato in: Nature Communications, Numero 17, 2026, ISSN 2041-1723
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41467-026-68981-5

Organizing the interface—Plasma membrane architecture and receptor dynamics in virus‐cell interactions

Autori: Jan Schlegel, Christian Sieben
Pubblicato in: FEBS Letters, 2026, ISSN 0014-5793
Editore: Wiley
DOI: 10.1002/1873-3468.70347

MultiStageSearch: An Iterative Workflow for Unbiased Taxonomic Analysis of Pathogens Using Proteogenomics

Autori: Julian Pipart, Tanja Holstein, Lennart Martens, Thilo Muth
Pubblicato in: Journal of Proteome Research, Numero 24, 2025, ISSN 1535-3893
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.JPROTEOME.4C00901

TIMS ² Rescore: A Data Dependent Acquisition-Parallel Accumulation and Serial Fragmentation-Optimized Data-Driven Rescoring Pipeline Based on MS ² Rescore

Autori: Arthur Declercq, Robbe Devreese, Jonas Scheid, Caroline Jachmann, Tim Van Den Bossche, Annica Preikschat, David Gomez-Zepeda, Jeewan Babu Rijal, Aurélie Hirschler, Jonathan R Krieger, Tharan Srikumar, George Rosenberger, Claudia Martelli, Dennis Trede, Christine Carapito, Stefan Tenzer, Juliane S Walz, Sven Degroeve, Robbin Bouwmeester, Lennart Martens, Ralf Gabriels
Pubblicato in: Journal of Proteome Research, Numero 24, 2025, ISSN 1535-3893
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.JPROTEOME.4C00609

Single influenza A viruses induce nanoscale cellular reprogramming at the virus-cell interface

Autori: Lukas Broich, Hannah Wullenkord, Maria Kaukab Osman, Yang Fu, Mathias Müsken, Peter Reuther, Mark Brönstrup, Christian Sieben
Pubblicato in: Nature Communications, Numero 16, 2025, ISSN 2041-1723
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-58935-8

MLMarker: a machine learning framework for tissue inference and biomarker discovery

Autori: Tine Claeys, Sam van Puyenbroeck, Kris Gevaert, Lennart Martens
Pubblicato in: Genome Biology, Numero 27, 2026, ISSN 1474-760X
Editore: Springer Science and Business Media LLC
DOI: 10.1186/S13059-026-04125-8

omicsGMF: a multi-tool for dimensionality reduction, batch correction and imputation in bulk- and single-cell proteomics

Autori: Alexandre Segers, Cristian Castiglione, Christophe Vanderaa, Lennart Martens, Davide Risso, Lieven Clement
Pubblicato in: Nature Communications, Numero 17, 2026, ISSN 2041-1723
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41467-026-73402-8

Collisional Cross-Section Prediction for Multiconformational Peptide Ions with IM2Deep

Autori: Robbe Devreese, Alireza Nameni, Arthur Declercq, Emmy Terryn, Ralf Gabriels, Francis Impens, Kris Gevaert, Lennart Martens, Robbin Bouwmeester
Pubblicato in: Analytical Chemistry, Numero 97, 2025, ISSN 0003-2700
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.ANALCHEM.5C01142