Data Intensive Modelling of the Rhizosphere Processes

Publikacje

Autorzy: Ruiz, Siul Aljadi, Mckay Fletcher, Daniel, Williams, Katherine, Roose, Tiina
Opublikowane w: Annual Plant Reviews Online, Numer 6, 2018, Strona(/y) NA, ISBN 9781119312994
Wydawca: Wiley
DOI: 10.1002/9781119312994.apr0755

Supplementary Information from Stabilizing gold nanoparticles for use in X-ray computed tomography imaging of soil systems

Autorzy: Scotson, Callum P.; Munoz-Hernando, Maria; Duncan, Simon J.; Siul A. Ruiz; Keyes, Samuel D.; Veelen, Arjen Van; Dunlop, Iain E.; Roose, Tiina
Opublikowane w: Royal Society Open Science, 2019
Wydawca: Royal Society
DOI: 10.6084/m9.figshare.9942854

Supplementary 01 from Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures

Autorzy: K. R. Daly; S. D. Keyes; T. Roose
Opublikowane w: Proceedings of the Royal Society A, 2018
Wydawca: Royal Society
DOI: 10.6084/m9.figshare.6668318.v1

Homogenisation of two fluid flow dependent on exudate concentration. from The effect of root exudates on rhizosphere water dynamics

Autorzy: L. J. Cooper; K. R. Daly; P. D. Hallett; N. Koebernick; T. S. George; T. Roose
Opublikowane w: Proceedings of the Royal Society A, 2018
Wydawca: Royal Society
DOI: 10.6084/m9.figshare.6982730

Supplementary 02 from Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures

Autorzy: K. R. Daly; S. D. Keyes; T. Roose
Opublikowane w: Proceedings of the Royal Society A, 2018
Wydawca: Royal Society
DOI: 10.6084/m9.figshare.6668315.v1

Supplementary Materials from Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation

Autorzy: S. D. Keyes; L. Cooper; S. Duncan; N. Koebernick; D. M. McKay Fletcher; C. P. Scotson; A. V. Van Veelen; I. Sinclair; T. Roose
Opublikowane w: Royal Society Interface, Numer 17425662, 2017, ISSN 1742-5662
Wydawca: Royal Society
DOI: 10.6084/m9.figshare.5555092.v1

Projected Increases in Precipitation Are Expected To Reduce Nitrogen Use Efficiency and Alter Optimal Fertilization Timings in Agriculture in the South East of England

Autorzy: Dan McKay Fletcher; Siul Ruiz; Katherine Williams; Chiara Petroselli; Nancy Walker; David Chadwick; Davey L. Jones; Tiina Roose
Opublikowane w: Crossref, Numer 26900645, 2021, ISSN 2690-0645
Wydawca: American Chemical Society
DOI: 10.1021/acsestengg.1c00492

X‐ray computed tomography imaging of solute movement through ridged and flat plant systems

Autorzy: Callum P. Scotson, Simon J. Duncan, Katherine A. Williams, Siul A. Ruiz, Tiina Roose
Opublikowane w: European Journal of Soil Science, Numer 72/1, 2021, Strona(/y) 198-214, ISSN 1351-0754
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/ejss.12985

Impact of root hairs on microscale soil physical properties in the field

Autorzy: M. Marin; P. D. Hallett; D. S. Feeney; L. K. Brown; M. Naveed; N. Koebernick; S. Ruiz; A. G. Bengough; T. Roose; T. S. George
Opublikowane w: Plant and Soil, Numer 0032079X, 2022, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-022-05530-1

Combining Seed Dressing and Foliar Applications of Phosphorus Fertilizer Can Give Similar Crop Growth and Yield Benefits to Soil Applications Together With Greater Recovery Rates

Autorzy: Peter J. Talboys, John R. Healey, Paul J. A. Withers, Tiina Roose, Anthony C. Edwards, Paulo S. Pavinato, Davey L. Jones
Opublikowane w: Frontiers in Agronomy, Numer 2, 2020, ISSN 2673-3218
Wydawca: Frontiers
DOI: 10.3389/fagro.2020.605655

Space and time‐resolved monitoring of phosphorus release from a fertilizer pellet and its mobility in soil using microdialysis and X‐ray computed tomography

Autorzy: Chiara Petroselli, Katherine A. Williams, Arpan Ghosh, Daniel McKay Fletcher, Siul A. Ruiz, Tiago Gerheim Souza Dias, Callum P. Scotson, Tiina Roose
Opublikowane w: Soil Science Society of America Journal, Numer 85/1, 2021, Strona(/y) 172-183, ISSN 0361-5995
Wydawca: Soil Science Society of America
DOI: 10.1002/saj2.20161

Mathematical and computational modelling of vegetated soil incorporating hydraulically-driven finite strain deformation

Autorzy: N.D. Woodman, J.A. Smethurst, T. Roose, W. Powrie, G.J. Meijer, J.A. Knappett, T. Dias
Opublikowane w: Computers and Geotechnics, Numer 127, 2020, Strona(/y) 103754, ISSN 0266-352X
Wydawca: Pergamon Press Ltd.
DOI: 10.1016/j.compgeo.2020.103754

Linking root structure to functionality: the impact of root system architecture on citrate‐enhanced phosphate uptake

Autorzy: Daniel M. McKay Fletcher, Siul Ruiz, Tiago Dias, Chiara Petroselli, Tiina Roose
Opublikowane w: New Phytologist, Numer 227/2, 2020, Strona(/y) 376-391, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.16554

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation

Autorzy: Nicolai Koebernick, Keith R. Daly, Samuel D. Keyes, Timothy S. George, Lawrie K. Brown, Annette Raffan, Laura J. Cooper, Muhammad Naveed, Anthony G. Bengough, Ian Sinclair, Paul D. Hallett, Tiina Roose
Opublikowane w: New Phytologist, Numer 216/1, 2017, Strona(/y) 124-135, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.14705

Quantification of root water uptake in soil using X-ray computed tomography and image-based modelling

Autorzy: Keith R. Daly, Saoirse R. Tracy, Neil M.J. Crout, Stefan Mairhofer, Tony P. Pridmore, Sacha J. Mooney, Tiina Roose
Opublikowane w: Plant, Cell & Environment, 2017, ISSN 0140-7791
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/pce.12983

The Application of Contrast Media for In Vivo Feature Enhancement in X-Ray Computed Tomography of Soil-Grown Plant Roots

Autorzy: Samuel D. Keyes, Neil J. Gostling, Jessica H. Cheung, Tiina Roose, Ian Sinclair, Alan Marchant
Opublikowane w: Microscopy and Microanalysis, Numer 23/03, 2017, Strona(/y) 538-552, ISSN 1431-9276
Wydawca: Cambridge University Press
DOI: 10.1017/S1431927617000319

An Explicit Structural Model of Root Hair and Soil Interactions Parameterised by Synchrotron X-ray Computed Tomography

Autorzy: Samuel David Keyes, Konstantinos C. Zygalakis, Tiina Roose
Opublikowane w: Bulletin of Mathematical Biology, Numer 79/12, 2017, Strona(/y) 2785-2813, ISSN 0092-8240
Wydawca: Academic Press
DOI: 10.1007/s11538-017-0350-x

Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation

Autorzy: S. D. Keyes, L. Cooper, S. Duncan, N. Koebernick, D. M. McKay Fletcher, C. P. Scotson, A. van Veelen, I. Sinclair, T. Roose
Opublikowane w: Journal of The Royal Society Interface, Numer 14/136, 2017, Strona(/y) 20170560, ISSN 1742-5689
Wydawca: The Royal Society
DOI: 10.1098/rsif.2017.0560

Modeling Soil Processes: Review, Key Challenges, and New Perspectives

Autorzy: H. Vereecken, A. Schnepf, J.W. Hopmans, M. Javaux, D. Or, T. Roose, J. Vanderborght, M.H. Young, W. Amelung, M. Aitkenhead, S.D. Allison, S. Assouline, P. Baveye, M. Berli, N. Brüggemann, P. Finke, M. Flury, T. Gaiser, G. Govers, T. Ghezzehei, P. Hallett, H.J. Hendricks Franssen, J. Heppell, R. Horn, J.A. Huisman, D. Jacques, F. Jonard, S. Kollet, F. Lafolie, K. Lamorski, D. Leitner, A. McBratney
Opublikowane w: Vadose Zone Journal, Numer 15/5, 2016, ISSN 1539-1663
Wydawca: Soil Science Society of America
DOI: 10.2136/vzj2015.09.0131

Plant exudates may stabilize or weaken soil depending on species, origin and time

Autorzy: M. Naveed, L. K. Brown, A. C. Raffan, T. S. George, A. G. Bengough, T. Roose, I. Sinclair, N. Koebernick, L. Cooper, C. A. Hackett, P. D. Hallett
Opublikowane w: European Journal of Soil Science, Numer 68/6, 2017, Strona(/y) 806-816, ISSN 1351-0754
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/ejss.12487

Mathematical modelling of water and solute movement in ridge plant systems with dynamic ponding

Autorzy: S. J. Duncan, K. R. Daly, P. Sweeney, T. Roose
Opublikowane w: European Journal of Soil Science, Numer 69/2, 2018, Strona(/y) 265-278, ISSN 1351-0754
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/ejss.12503

Modelling water dynamics in the rhizosphere

Autorzy: K.R. Daly, L.J. Cooper, N. Koebernick, J. Evaristo, S.D. Keyes, A. van Veelen, T. Roose
Opublikowane w: Rhizosphere, Numer 4, 2017, Strona(/y) 139-151, ISSN 2452-2198
Wydawca: Elsevier
DOI: 10.1016/j.rhisph.2017.10.004

Fluid flow in porous media using image-based modelling to parametrize Richards' equation

Autorzy: L. J. Cooper, K. R. Daly, P. D. Hallett, M. Naveed, N. Koebernick, A. G. Bengough, T. S. George, T. Roose
Opublikowane w: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Numer 473/2207, 2017, Strona(/y) 20170178, ISSN 1364-5021
Wydawca: Royal Society of London
DOI: 10.1098/rspa.2017.0178

Rhizosphere-Scale Quantification of Hydraulic and Mechanical Properties of Soil Impacted by Root and Seed Exudates

Autorzy: M. Naveed, L.K. Brown, A.C. Raffan, T.S. George, A.G. Bengough, T. Roose, I. Sinclair, N. Koebernick, L. Cooper, P.D. Hallett
Opublikowane w: Vadose Zone Journal, Numer 17/1, 2018, ISSN 1539-1663
Wydawca: Soil Science Society of America
DOI: 10.2136/vzj2017.04.0083

Determination of macro-scale soil properties from pore-scale structures: model derivation

Autorzy: K. R. Daly, T. Roose
Opublikowane w: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Numer 474/2209, 2018, Strona(/y) 20170141, ISSN 1364-5021
Wydawca: Royal Society of London
DOI: 10.1098/rspa.2017.0141

Noninvasive Imaging of Processes in Natural Porous Media: From Pore to Field Scale

Autorzy: Andreas Pohlmeier, Sarah Garré, Tiina Roose
Opublikowane w: Vadose Zone Journal, Numer 17/1, 2018, ISSN 1539-1663
Wydawca: Soil Science Society of America
DOI: 10.2136/vzj2018.03.0044

Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures

Autorzy: K. R. Daly, S. D. Keyes, T. Roose
Opublikowane w: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Numer 474/2215, 2018, Strona(/y) 20170745, ISSN 1364-5021
Wydawca: Royal Society of London
DOI: 10.1098/rspa.2017.0745

Correlative Visualization of Root Mucilage Degradation Using X-ray CT and MRI

Autorzy: Arjen van Veelen, Monique C. Tourell, Nicolai Koebernick, Giuseppe Pileio, Tiina Roose
Opublikowane w: Frontiers in Environmental Science, Numer 6, 2018, ISSN 2296-665X
Wydawca: Frontiers
DOI: 10.3389/fenvs.2018.00032

Mathematical modelling of water and solute movement in ridged versus flat planting systems

Autorzy: S. J. Duncan, K. R. Daly, P. Sweeney, T. Roose
Opublikowane w: European Journal of Soil Science, 2018, ISSN 1351-0754
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/ejss.12711

A Model of Uranium Uptake by Plant Roots Allowing for Root-Induced Changes in the soil

Autorzy: Andrea Boghi, Tiina Roose, Guy J. D. Kirk
Opublikowane w: Environmental Science & Technology, Numer 52/6, 2018, Strona(/y) 3536-3545, ISSN 0013-936X
Wydawca: American Chemical Society
DOI: 10.1021/acs.est.7b06136

The effect of root exudates on rhizosphere water dynamics

Autorzy: L. J. Cooper, K. R. Daly, P. D. Hallett, N. Koebernick, T. S. George, T. Roose
Opublikowane w: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science, Numer 474/2217, 2018, Strona(/y) 20180149, ISSN 1364-5021
Wydawca: Royal Society of London
DOI: 10.1098/rspa.2018.0149

Quantifying citrate-enhanced phosphate root uptake using microdialysis

Autorzy: D. M. McKay Fletcher, R. Shaw, A. R. Sánchez-Rodríguez, K. R. Daly, A. van Veelen, D. L. Jones, T. Roose
Opublikowane w: Plant and Soil, 2019, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-019-04376-4

Root‐induced soil deformation influences Fe, S and P: rhizosphere chemistry investigated using synchrotron XRF and XANES

Autorzy: Arjen Veelen, Nicolai Koebernick, Callum S. Scotson, Daniel McKay‐Fletcher, Thomas Huthwelker, Camelia N. Borca, J. Fred W. Mosselmans, Tiina Roose
Opublikowane w: New Phytologist, Numer 225/4, 2019, Strona(/y) 1476-1490, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.16242

Significance of root hairs at the field scale – modelling root water and phosphorus uptake under different field conditions

Autorzy: S. Ruiz, N. Koebernick, S. Duncan, D. McKay Fletcher, C. Scotson, A. Boghi, M. Marin, A. G. Bengough, T. S. George, L. K. Brown, P. D. Hallett, T. Roose
Opublikowane w: Plant and Soil, Numer 447/1-2, 2020, Strona(/y) 281-304, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-019-04308-2

Stabilizing gold nanoparticles for use in X-ray computed tomography imaging of soil systems

Autorzy: Callum P. Scotson, Maria Munoz-Hernando, Simon J. Duncan, Siul A. Ruiz, Samuel D. Keyes, Arjen van Veelen, Iain E. Dunlop, Tiina Roose
Opublikowane w: Royal Society Open Science, Numer 6/10, 2019, Strona(/y) 190769, ISSN 2054-5703
Wydawca: Royal Society
DOI: 10.1098/rsos.190769

Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil

Autorzy: Simon J. Duncan, Keith R. Daly, Daniel M. McKay Fletcher, Siul Ruiz, Paul Sweeney, Tiina Roose
Opublikowane w: Bulletin of Mathematical Biology, Numer 81/10, 2019, Strona(/y) 3778-3802, ISSN 0092-8240
Wydawca: Academic Press
DOI: 10.1007/s11538-019-00656-3

Soil carbon dioxide venting through rice roots

Autorzy: Guy J.D. Kirk, Andrea Boghi, Marie‐Cecile Affholder, Samuel D. Keyes, James Heppell, Tiina Roose
Opublikowane w: Plant, Cell & Environment, Numer 42/12, 2019, Strona(/y) 3197-3207, ISSN 0140-7791
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/pce.13638

A multi image-based approach for modelling plant-fertiliser interaction

Autorzy: Daniel M. McKay Fletcher, Samuel D. Keyes, Keith R. Daly, Arjen van Veelen, Tiina Roose
Opublikowane w: Rhizosphere, Numer 10, 2019, Strona(/y) 100152, ISSN 2452-2198
Wydawca: Elsevier
DOI: 10.1016/j.rhisph.2019.100152

Surface tension, rheology and hydrophobicity of rhizodeposits and seed mucilage influence soil water retention and hysteresis

Autorzy: M. Naveed, M. A. Ahmed, P. Benard, L. K. Brown, T. S. George, A. G. Bengough, T. Roose, N. Koebernick, P. D. Hallett
Opublikowane w: Plant and Soil, Numer 437/1-2, 2019, Strona(/y) 65-81, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-019-03939-9

Imaging microstructure of the barley rhizosphere: particle packing and root hair influences

Autorzy: Nicolai Koebernick, Keith R. Daly, Samuel D. Keyes, Anthony G. Bengough, Lawrie K. Brown, Laura J. Cooper, Timothy S. George, Paul D. Hallett, Muhammad Naveed, Annette Raffan, Tiina Roose
Opublikowane w: New Phytologist, Numer 221/4, 2018, Strona(/y) 1878-1889, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.15516

Mapping soil deformation around plant roots using in vivo 4D X-ray computed tomography and digital volume correlation

Autorzy: S.D. Keyes, F. Gillard, N. Soper, M.N. Mavrogordato, I Sinclair, T. Roose
Opublikowane w: Journal of Biomechanics, 2016, ISSN 0021-9290
Wydawca: Elsevier BV
DOI: 10.1016/j.jbiomech.2016.04.023

Challenges in imaging and predictive modeling of rhizosphere processes

Autorzy: T. Roose, S. D. Keyes, K. R. Daly, A. Carminati, W. Otten, D. Vetterlein, S. Peth
Opublikowane w: Plant and Soil, 2016, Strona(/y) Processing charge is the list price that was not paid since we got it Gold Open access via Springer hybrid offsetting scheme, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-016-2872-7

Image-based modelling of nutrient movement in and around the rhizosphere

Autorzy: Keith R. Daly, Samuel D. Keyes, Shakil Masum, Tiina Roose
Opublikowane w: Journal of Experimental Botany, Numer 67/4, 2016, Strona(/y) 1059-1070, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/erv544

Precipitation-optimised targeting of nitrogen fertilisers in a model maize cropping system

Autorzy: D.M. McKay Fletcher, S.A. Ruiz, T. Dias, D.R. Chadwick, D.L. Jones, T. Roose
Opublikowane w: Science of The Total Environment, Numer 756, 2021, Strona(/y) 144051, ISSN 0048-9697
Wydawca: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.144051

Multimodal correlative imaging and modelling of phosphorus uptake from soil by hyphae of mycorrhizal fungi

Autorzy: Sam Keyes; Arjen Veelen; Dan McKay Fletcher; Callum Scotson; Nico Koebernick; Chiara Petroselli; Katherine Williams; Siul Ruiz; Laura Cooper; Robbie Mayon; Simon Duncan; Marc Dumont; Iver Jakobsen; Giles Oldroyd; Andrzej Tkacz; Philip Poole; Fred Mosselmans; Camelia Borca; Thomas Huthwelker; David L. Jones; Tiina Roose
Opublikowane w: Keyes , S , van Veelen , A , McKay Fletcher , D , Scotson , C , Koebernick , N , Petroselli , C , Williams , K , Ruiz , S , Cooper , L , Mayon , R , Duncan , S , Dumont , M , Jakobsen , I , Oldroyd , G , Tkacz , A , Poole , P , Mosselmans , F , Borca , C , Huthwelker , T , Jones , D L & Roose , T 2022 , ' Multimodal correlative imaging and modelling of phosphorus uptake from soil by hyphae of myco, Numer 1, 2022, ISSN 1469-8137
Wydawca: Wiley
DOI: 10.17863/cam.81466

Image-based quantification of soil microbial dead zones induced by nitrogen fertilization

Autorzy: S.A. Ruiz, D.M. McKay Fletcher, A. Boghi, K.A. Williams, S.J. Duncan, C.P. Scotson, C. Petroselli, T.G.S. Dias, D.R. Chadwick, D.L. Jones, T. Roose
Opublikowane w: Science of The Total Environment, Numer 727, 2020, Strona(/y) 138197, ISSN 0048-9697
Wydawca: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.138197

A 3D image-based modelling approach for understanding spatiotemporal processes in phosphorus fertiliser

Autorzy: K. A. Williams, D. McKay Fletcher, C. Petroselli, S. A. Ruiz, T. Roose
Opublikowane w: Nature Scientific Reports, Numer 20452322, 2022, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-022-19047-1

Developing a system for in vivo imaging of maize roots containing iodinated contrast media in soil using synchrotron XCT and XRF

Autorzy: Callum P. Scotson, Arjen van Veelen, Katherine A. Williams, Nicolai Koebernick, Dan McKay Fletcher, Tiina Roose
Opublikowane w: Plant and Soil, Numer 460/1-2, 2021, Strona(/y) 647-665, ISSN 0032-079X
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11104-020-04784-x

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