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Structure function relationships of the phyllosphere microbiota

Publications

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

Author(s): Eric J. N. Helfrich, Christine M. Vogel, Reiko Ueoka, Martin Schäfer, Florian Ryffel, Daniel B. Müller, Silke Probst, Markus Kreuzer, Jörn Piel, Julia A. Vorholt
Published in: Nature Microbiology, 3/8, 2018, Page(s) 909-919, ISSN 2058-5276
Publisher: Springer Nature
DOI: 10.1038/s41564-018-0200-0

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

Author(s): Charlotte I. Carlström, Christopher M. Field, Miriam Bortfeld-Miller, Barbara Müller, Shinichi Sunagawa, Julia A. Vorholt
Published in: Nature Ecology & Evolution, 3/10, 2019, Page(s) 1445-1454, ISSN 2397-334X
Publisher: Springer Nature
DOI: 10.1038/s41559-019-0994-z

Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

Author(s): Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z DeMaere, Rayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika
Published in: Nature Methods, 14/11, 2017, Page(s) 1063-1071, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4458

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research

Author(s): Julia A. Vorholt, Christine Vogel, Charlotte I. Carlström, Daniel B. Müller
Published in: Cell Host & Microbe, 22/2, 2017, Page(s) 142-155, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2017.07.004

Genomic features of bacterial adaptation to plants

Author(s): Asaf Levy, Isai Salas Gonzalez, Maximilian Mittelviefhaus, Scott Clingenpeel, Sur Herrera Paredes, Jiamin Miao, Kunru Wang, Giulia Devescovi, Kyra Stillman, Freddy Monteiro, Bryan Rangel Alvarez, Derek S. Lundberg, Tse-Yuan Lu, Sarah Lebeis, Zhao Jin, Meredith McDonald, Andrew P. Klein, Meghan E. Feltcher, Tijana Glavina Rio, Sarah R. Grant, Sharon L. Doty, Ruth E. Ley, Bingyu Zhao, Vittorio Ventu
Published in: Nature Genetics, 50/1, 2018, Page(s) 138-150, ISSN 1061-4036
Publisher: Nature Publishing Group
DOI: 10.1038/s41588-017-0012-9

The Plant Microbiota: Systems-Level Insights and Perspectives

Author(s): Daniel B. Müller, Christine Vogel, Yang Bai, Julia A. Vorholt
Published in: Annual Review of Genetics, 50/1, 2016, Page(s) 211-234, ISSN 0066-4197
Publisher: Annual Reviews, Inc.
DOI: 10.1146/annurev-genet-120215-034952

Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization

Author(s): Daniel B. Müller, Olga T. Schubert, Hannes Röst, Ruedi Aebersold, Julia A. Vorholt
Published in: Molecular & Cellular Proteomics, 15/10, 2016, Page(s) 3256-3269, ISSN 1535-9476
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/mcp.M116.058164

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health

Author(s): Christine Vogel, Natacha Bodenhausen, Wilhelm Gruissem, Julia A. Vorholt
Published in: New Phytologist, 212/1, 2016, Page(s) 192-207, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.14036

Functional overlap of the Arabidopsis leaf and root microbiota

Author(s): Yang Bai, Daniel B. Müller, Girish Srinivas, Ruben Garrido-Oter, Eva Potthoff, Matthias Rott, Nina Dombrowski, Philipp C. Münch, Stijn Spaepen, Mitja Remus-Emsermann, Bruno Hüttel, Alice C. McHardy, Julia A. Vorholt, Paul Schulze-Lefert
Published in: Nature, 528/7582, 2015, Page(s) 364-369, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/nature16192

A modular atomic force microscopy approach reveals a large range of hydrophobic adhesion forces among bacterial members of the leaf microbiota

Author(s): Maximilian Mittelviefhaus, Daniel B. Müller, Tomaso Zambelli, Julia A. Vorholt
Published in: The ISME Journal, 13/7, 2019, Page(s) 1878-1882, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/s41396-019-0404-1