Structure function relationships of the phyllosphere microbiota

Publikacje

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

Autorzy: Eric J. N. Helfrich, Christine M. Vogel, Reiko Ueoka, Martin Schäfer, Florian Ryffel, Daniel B. Müller, Silke Probst, Markus Kreuzer, Jörn Piel, Julia A. Vorholt
Opublikowane w: Nature Microbiology, Numer 3/8, 2018, Strona(/y) 909-919, ISSN 2058-5276
Wydawca: Springer Nature
DOI: 10.1038/s41564-018-0200-0

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

Autorzy: Charlotte I. Carlström, Christopher M. Field, Miriam Bortfeld-Miller, Barbara Müller, Shinichi Sunagawa, Julia A. Vorholt
Opublikowane w: Nature Ecology & Evolution, Numer 3/10, 2019, Strona(/y) 1445-1454, ISSN 2397-334X
Wydawca: Springer Nature
DOI: 10.1038/s41559-019-0994-z

Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

Autorzy: Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z DeMaere, Rayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika
Opublikowane w: Nature Methods, Numer 14/11, 2017, Strona(/y) 1063-1071, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/nmeth.4458

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research

Autorzy: Julia A. Vorholt, Christine Vogel, Charlotte I. Carlström, Daniel B. Müller
Opublikowane w: Cell Host & Microbe, Numer 22/2, 2017, Strona(/y) 142-155, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2017.07.004

Genomic features of bacterial adaptation to plants

Autorzy: Asaf Levy, Isai Salas Gonzalez, Maximilian Mittelviefhaus, Scott Clingenpeel, Sur Herrera Paredes, Jiamin Miao, Kunru Wang, Giulia Devescovi, Kyra Stillman, Freddy Monteiro, Bryan Rangel Alvarez, Derek S. Lundberg, Tse-Yuan Lu, Sarah Lebeis, Zhao Jin, Meredith McDonald, Andrew P. Klein, Meghan E. Feltcher, Tijana Glavina Rio, Sarah R. Grant, Sharon L. Doty, Ruth E. Ley, Bingyu Zhao, Vittorio Ventu
Opublikowane w: Nature Genetics, Numer 50/1, 2018, Strona(/y) 138-150, ISSN 1061-4036
Wydawca: Nature Publishing Group
DOI: 10.1038/s41588-017-0012-9

The Plant Microbiota: Systems-Level Insights and Perspectives

Autorzy: Daniel B. Müller, Christine Vogel, Yang Bai, Julia A. Vorholt
Opublikowane w: Annual Review of Genetics, Numer 50/1, 2016, Strona(/y) 211-234, ISSN 0066-4197
Wydawca: Annual Reviews, Inc.
DOI: 10.1146/annurev-genet-120215-034952

Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization

Autorzy: Daniel B. Müller, Olga T. Schubert, Hannes Röst, Ruedi Aebersold, Julia A. Vorholt
Opublikowane w: Molecular & Cellular Proteomics, Numer 15/10, 2016, Strona(/y) 3256-3269, ISSN 1535-9476
Wydawca: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/mcp.M116.058164

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health

Autorzy: Christine Vogel, Natacha Bodenhausen, Wilhelm Gruissem, Julia A. Vorholt
Opublikowane w: New Phytologist, Numer 212/1, 2016, Strona(/y) 192-207, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.14036

Functional overlap of the Arabidopsis leaf and root microbiota

Autorzy: Yang Bai, Daniel B. Müller, Girish Srinivas, Ruben Garrido-Oter, Eva Potthoff, Matthias Rott, Nina Dombrowski, Philipp C. Münch, Stijn Spaepen, Mitja Remus-Emsermann, Bruno Hüttel, Alice C. McHardy, Julia A. Vorholt, Paul Schulze-Lefert
Opublikowane w: Nature, Numer 528/7582, 2015, Strona(/y) 364-369, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/nature16192

A modular atomic force microscopy approach reveals a large range of hydrophobic adhesion forces among bacterial members of the leaf microbiota

Autorzy: Maximilian Mittelviefhaus, Daniel B. Müller, Tomaso Zambelli, Julia A. Vorholt
Opublikowane w: The ISME Journal, Numer 13/7, 2019, Strona(/y) 1878-1882, ISSN 1751-7362
Wydawca: Nature Publishing Group
DOI: 10.1038/s41396-019-0404-1

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