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Cracking the epitranscriptome

Publications

Quantitative nucleotide resolution profiling of RNA cytidine acetylation by ac4C-seq

Auteurs: Supuni Thalalla Gamage, Aldema Sas-Chen, Schraga Schwartz, Jordan L. Meier
Publié dans: Nature Protocols, Issue 16/4, 2021, Page(s) 2286-2307, ISSN 1754-2189
Éditeur: Nature Publishing Group
DOI: 10.1038/s41596-021-00501-9

Multiplexed profiling facilitates robust m6A quantification at site, gene and sample resolution.

Auteurs: David Dierks, Miguel Angel Garcia-Campos, Anna Uzonyi, Modi Safra, Sarit Edelheit, Alice Rossi, Theodora Sideri, Radhika A. Varier, Alexander Brandis, Yonatan Stelzer, Folkert van Werven, Ruth Scherz-Shouval & Schraga Schwartz
Publié dans: Nature Methods, 2021, ISSN 1548-7105
Éditeur: Nature Methods
DOI: 10.1038/s41592-021-01242-z

The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution

Auteurs: Modi Safra, Aldema Sas-Chen, Ronit Nir, Roni Winkler, Aharon Nachshon, Dan Bar-Yaacov, Matthias Erlacher, Walter Rossmanith, Noam Stern-Ginossar, Schraga Schwartz
Publié dans: Nature, 2017, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/nature24456

TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code

Auteurs: Modi Safra, Ronit Nir, Daneyal Farouq, Ilya Vainberg Slutskin, Schraga Schwartz
Publié dans: Genome Research, Issue 27/3, 2017, Page(s) 393-406, ISSN 1088-9051
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.207613.116

Variants in PUS7 Cause Intellectual Disability with Speech Delay, Microcephaly, Short Stature, and Aggressive Behavior

Auteurs: Arjan P.M. de Brouwer, Rami Abou Jamra, Nadine Körtel, Clara Soyris, Daniel L. Polla, Modi Safra, Avia Zisso, Christopher A. Powell, Pedro Rebelo-Guiomar, Nadja Dinges, Violeta Morin, Michael Stock, Mureed Hussain, Mohsin Shahzad, Saima Riazuddin, Zubair M. Ahmed, Rolph Pfundt, Franziska Schwarz, Lonneke de Boer, André Reis, Detilina Grozeva, F. Lucy Raymond, Sheikh Riazuddin, David A. Koolen, M
Publié dans: The American Journal of Human Genetics, Issue 103/6, 2018, Page(s) 1045-1052, ISSN 0002-9297
Éditeur: University of Chicago Press
DOI: 10.1016/j.ajhg.2018.10.026

m6A modification controls the innate immune response to infection by targeting type I interferons

Auteurs: Roni Winkler, Ella Gillis, Lior Lasman, Modi Safra, Shay Geula, Clara Soyris, Aharon Nachshon, Julie Tai-Schmiedel, Nehemya Friedman, Vu Thuy Khanh Le-Trilling, Mirko Trilling, Michal Mandelboim, Jacob H. Hanna, Schraga Schwartz, Noam Stern-Ginossar
Publié dans: Nature Immunology, Issue 20/2, 2019, Page(s) 173-182, ISSN 1529-2908
Éditeur: Nature Publishing Group
DOI: 10.1038/s41590-018-0275-z

Context-dependent functional compensation between Ythdf m6A reader proteins

Auteurs: Lior Lasman, Vladislav Krupalnik, Shay Geula, Mirie Zerbib, Sergey Viukov, Nofar Mor, Alejandro Aguilera Castrejon, Orel Mizrahi, Sathe Shashank, Aharon Nachshon, Dan Schneir, Stefan Aigner, Archana Shankar, Jasmine Mueller, Noam Stern-Ginossar, Gene W Yeo, Noa Novershtern, Jacob H Hanna
Publié dans: Genes and Development, Issue Vol.34 (19-20), 2020, Page(s) 1373-1391, ISSN 0890-9369
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2020.06.03.131441

Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping

Auteurs: Aldema Sas-Chen, Justin M. Thomas, Donna Matzov, Masato Taoka, Kellie D. Nance, Ronit Nir, Keri M. Bryson, Ran Shachar, Geraldy L. S. Liman, Brett W. Burkhart, Supuni Thalalla Gamage, Yuko Nobe, Chloe A. Briney, Michaella J. Levy, Ryan T. Fuchs, G. Brett Robb, Jesse Hartmann, Sunny Sharma, Qishan Lin, Laurence Florens, Michael P. Washburn, Toshiaki Isobe, Thomas J. Santangelo, Moran Shalev-Benami,
Publié dans: Nature, Issue 583/7817, 2020, Page(s) 638-643, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-020-2418-2

Deciphering the “m6A Code” via Antibody-Independent Quantitative Profiling

Auteurs: Miguel Angel Garcia-Campos, Sarit Edelheit, Ursula Toth, Modi Safra, Ran Shachar, Sergey Viukov, Roni Winkler, Ronit Nir, Lior Lasman, Alexander Brandis, Jacob H. Hanna, Walter Rossmanith, Schraga Schwartz
Publié dans: Cell, Issue 178/3, 2019, Page(s) 731-747.e16, ISSN 0092-8674
Éditeur: Cell Press
DOI: 10.1016/j.cell.2019.06.013

m 1 A within cytoplasmic mRNAs at single nucleotide resolution: a reconciled transcriptome-wide map

Auteurs: Schraga Schwartz
Publié dans: RNA, Issue 24/11, 2018, Page(s) 1427-1436, ISSN 1355-8382
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1261/rna.067348.118

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