Interaction Dynamics of Bacterial Biofilms with Bacteriophages

Project Information

BIOFAGE

Grant agreement ID: 716734

DOI

10.3030/716734

Project closed

EC signature date 7 October 2016

Start date 1 January 2017

End date 31 August 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 494 963,00

EU contribution

€ 1 494 963,00

Coordinated by

UNIVERSITAT BASEL
Switzerland

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (25)

Advances and opportunities in image analysis of bacterial cells and communities

Author(s): Hannah Jeckel, Knut Drescher
Published in: FEMS Microbiology Reviews, Issue 45/4, 2021, ISSN 1574-6976
Publisher: Oxford University Press
DOI: 10.1093/femsre/fuaa062

Multicellular and unicellular responses of microbial biofilms to stress

Author(s): Daniel K.H. Rode, Praveen K. Singh, Knut Drescher
Published in: Biological Chemistry, Issue 401/12, 2020, Page(s) 1365-1374, ISSN 1431-6730
Publisher: Walter de Gruyter GmbH & Co. KG
DOI: 10.1515/hsz-2020-0213

BacStalk: A comprehensive and interactive image analysis software tool for bacterial cell biology

Author(s): Raimo Hartmann, Muriel C. F. Teeseling, Martin Thanbichler, Knut Drescher
Published in: Molecular Microbiology, Issue 114/1, 2020, Page(s) 140-150, ISSN 0950-382X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14501

Roadmap on emerging concepts in the physical biology of bacterial biofilms: From surface sensing to community formation

Author(s): Gerard C. L. Wong; Jyot D. Antani; Pushkar P. Lele; Jing Chen; Beiyan Nan; Marco Kühn; Alexandre Persat; Jean Louis Bru; Nina Molin Høyland-Kroghsbo; Albert Siryaporn; Jacinta C. Conrad; Francesco Carrara; Yutaka Yawata; Roman Stocker; Yves V. Brun; Gregory B. Whitfield; Calvin K. Lee; Jaime de Anda; William C. Schmidt; Ramin Golestanian; Ramin Golestanian; George A. O'Toole; Kyle A. Floyd; Fitn
Published in: Physical Biology, 18 (5), Issue 5, 2021, ISSN 1478-3975
Publisher: IOP Publishing
DOI: 10.1088/1478-3975/abdc0e

Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity

Author(s): A. L. Gallego-Hernandez, W. H. DePas, J. H. Park, J. K. Teschler, R. Hartmann, H. Jeckel, K. Drescher, S. Beyhan, D. K. Newman, F. H. Yildiz
Published in: Proceedings of the National Academy of Sciences, Issue 117/20, 2020, Page(s) 11010-11017, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1916571117

Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria

Author(s): Emilia L. Simmons, Matthew C. Bond, Britt Koskella, Knut Drescher, Vanni Bucci, Carey D. Nadell
Published in: mSystems, Issue 5/3, 2020, ISSN 2379-5077
Publisher: American Society of Microbiology
DOI: 10.1128/msystems.00877-19

Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function

Author(s): Francisco Díaz-Pascual, Raimo Hartmann, Martin Lempp, Lucia Vidakovic, Boya Song, Hannah Jeckel, Kai M. Thormann, Fitnat H. Yildiz, Jörn Dunkel, Hannes Link, Carey D. Nadell, Knut Drescher
Published in: Nature Microbiology, Issue 4/12, 2019, Page(s) 2136-2145, ISSN 2058-5276
Publisher: Nature Publishing Group
DOI: 10.1038/s41564-019-0579-2

Interkingdom assemblages in human saliva display group-level surface mobility and disease-promoting emergent functions

Author(s): Zhi Ren, Hannah Jeckel, Aurea Simon-Soro, Zhenting Xiang, Yuan Liu, Indira M. Cavalcanti, Jin Xiao, Nyi-Nyi, Anderson Hara, Knut Drescher, Hyun Koo
Published in: Proceedings of the National Academy of Sciences, Issue 00278424, 2022, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2209699119

Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries

Author(s): Stoyan Yordanov, Konstantin Neuhaus, Raimo Hartmann, Francisco Díaz-Pascual, Lucia Vidakovic, Praveen K. Singh, Knut Drescher
Published in: Biomedical Optics Express, Issue 12/6, 2021, Page(s) 3372, ISSN 2156-7085
Publisher: The Optical Society
DOI: 10.1364/boe.420788

Topological Metric Detects Hidden Order in Disordered Media

Author(s): Dominic J. Skinner, Boya Song, Hannah Jeckel, Eric Jelli, Knut Drescher, Jörn Dunkel
Published in: Physical Review Letters, Issue 126/4, 2021, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/physrevlett.126.048101

Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms

Author(s): Simon B. Otto, Marivic Martin, Daniel Schäfer, Raimo Hartmann, Knut Drescher, Susanne Brix, Anna Dragoš, Ákos T. Kovács
Published in: mSystems, Issue 5/4, 2020, ISSN 2379-5077
Publisher: American Society of Microbiology
DOI: 10.1128/msystems.00425-20

Division of Labor during Biofilm Matrix Production

Author(s): Anna Dragoš, Heiko Kiesewalter, Marivic Martin, Chih-Yu Hsu, Raimo Hartmann, Tobias Wechsler, Carsten Eriksen, Susanne Brix, Knut Drescher, Nicola Stanley-Wall, Rolf Kümmerli, Ákos T. Kovács
Published in: Current Biology, Issue 28/12, 2018, Page(s) 1903-1913.e5, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2018.04.046

Phage mobility is a core determinant of phage–bacteria coexistence in biofilms

Author(s): Matthew Simmons, Knut Drescher, Carey D Nadell, Vanni Bucci
Published in: The ISME Journal, Issue 12/2, 2017, Page(s) 531-543, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/ismej.2017.190

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms

Author(s): Ricardo Martínez-García, Carey D. Nadell, Raimo Hartmann, Knut Drescher, Juan A. Bonachela
Published in: PLOS Computational Biology, Issue 14/4, 2018, Page(s) e1006094, ISSN 1553-7358
Publisher: PLOS Computational Biology
DOI: 10.1371/journal.pcbi.1006094

Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal

Author(s): Praveen K. Singh, Sabina Bartalomej, Raimo Hartmann, Hannah Jeckel, Lucia Vidakovic, Carey D. Nadell, Knut Drescher
Published in: Current Biology, Issue 27/21, 2017, Page(s) 3359-3366.e7, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2017.09.041

Dynamic biofilm architecture confers individual and collective mechanisms of viral protection

Author(s): Lucia Vidakovic, Praveen K. Singh, Raimo Hartmann, Carey D. Nadell, Knut Drescher
Published in: Nature Microbiology, Issue 3/1, 2018, Page(s) 26-31, ISSN 2058-5276
Publisher: Nature Microbiology
DOI: 10.1038/s41564-017-0050-1

Learning the space-time phase diagram of bacterial swarm expansion

Author(s): Hannah Jeckel, Eric Jelli, Raimo Hartmann, Praveen K. Singh, Rachel Mok, Jan Frederik Totz, Lucia Vidakovic, Bruno Eckhardt, Jörn Dunkel, Knut Drescher
Published in: Proceedings of the National Academy of Sciences, Issue 116/5, 2019, Page(s) 1489-1494, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1811722116

Emergence of three-dimensional order and structure in growing biofilms

Author(s): Raimo Hartmann, Praveen K. Singh, Philip Pearce, Rachel Mok, Boya Song, Francisco Díaz-Pascual, Jörn Dunkel, Knut Drescher
Published in: Nature Physics, Issue 15/3, 2019, Page(s) 251-256, ISSN 1745-2473
Publisher: Nature Publishing Group
DOI: 10.1038/s41567-018-0356-9

Quantitative image analysis of microbial communities with BiofilmQ

Author(s): Raimo Hartmann, Hannah Jeckel, Eric Jelli, Praveen K. Singh, Sanika Vaidya, Miriam Bayer, Daniel K. H. Rode, Lucia Vidakovic, Francisco Díaz-Pascual, Jiunn C. N. Fong, Anna Dragoš, Olga Lamprecht, Janne G. Thöming, Niklas Netter, Susanne Häussler, Carey D. Nadell, Victor Sourjik, Ákos T. Kovács, Fitnat H. Yildiz, Knut Drescher
Published in: Nature Microbiology, Issue 6/2, 2021, Page(s) 151-156, ISSN 2058-5276
Publisher: Nature Publication Group
DOI: 10.1038/s41564-020-00817-4

Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells

Author(s): Matthew C Bond, Lucia Vidakovic, Praveen K Singh, Knut Drescher, Carey D Nadell
Published in: eLife, Issue 10, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.65355

RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae

Author(s): Nikolai Peschek, Roman Herzog, Praveen K. Singh, Marcel Sprenger, Fabian Meyer, Kathrin S. Fröhlich, Luise Schröger, Marc Bramkamp, Knut Drescher, Kai Papenfort
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-19890-8

VxrB Influences Antagonism within Biofilms by Controlling Competition through Extracellular Matrix Production and Type 6 Secretion

Author(s): Jennifer K. Teschler; Eva Jiménez-Siebert; Hannah Jeckel; Praveen K. Singh; Jin Hwan Park; Stefan Pukatzki; Carey D. Nadell; Knut Drescher; Fitnat H. Yildiz
Published in: mBio, Issue 1, 2022, ISSN 2150-7511
Publisher: American Society for Microbiology
DOI: 10.1128/mbio.01885-22

A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae

Author(s): Carmen Schwechheimer, Kassidy Hebert, Sarvind Tripathi, Praveen K. Singh, Kyle A. Floyd, Elise R. Brown, Monique E. Porcella, Jacqueline Osorio, Joseph T. M. Kiblen, Fernando A. Pagliai, Knut Drescher, Seth M. Rubin, Fitnat H. Yildiz
Published in: PLOS Pathogens, Issue 16/8, 2020, Page(s) e1008745, ISSN 1553-7374
Publisher: PLOS
DOI: 10.1371/journal.ppat.1008745

Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms

Author(s): Philip Pearce, Boya Song, Dominic J. Skinner, Rachel Mok, Raimo Hartmann, Praveen K. Singh, Hannah Jeckel, Jeffrey S. Oishi, Knut Drescher, Jörn Dunkel
Published in: Physical Review Letters, Issue 123/25, 2019, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/physrevlett.123.258101

Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate‐dependent autoproteolysis activity

Author(s): Manuel Maestre‐Reyna, Wei‐Cheng Huang, Wen‐Jin Wu, Praveen K. Singh, Raimo Hartmann, Po‐Hsun Wang, Cheng‐Chung Lee, Takaaki Hikima, Masaki Yamamoto, Yoshitaka Bessho, Knut Drescher, Ming‐Daw Tsai, Andrew H.‐J. Wang
Published in: IUBMB Life, Issue 73/2, 2021, Page(s) 418-431, ISSN 1521-6543
Publisher: Taylor & Francis
DOI: 10.1002/iub.2439