Interaction Dynamics of Bacterial Biofilms with Bacteriophages

Publikacje

Advances and opportunities in image analysis of bacterial cells and communities

Autorzy: Hannah Jeckel, Knut Drescher
Opublikowane w: FEMS Microbiology Reviews, Numer 45/4, 2021, ISSN 1574-6976
Wydawca: Oxford University Press
DOI: 10.1093/femsre/fuaa062

Multicellular and unicellular responses of microbial biofilms to stress

Autorzy: Daniel K.H. Rode, Praveen K. Singh, Knut Drescher
Opublikowane w: Biological Chemistry, Numer 401/12, 2020, Strona(/y) 1365-1374, ISSN 1431-6730
Wydawca: Walter de Gruyter GmbH & Co. KG
DOI: 10.1515/hsz-2020-0213

BacStalk: A comprehensive and interactive image analysis software tool for bacterial cell biology

Autorzy: Raimo Hartmann, Muriel C. F. Teeseling, Martin Thanbichler, Knut Drescher
Opublikowane w: Molecular Microbiology, Numer 114/1, 2020, Strona(/y) 140-150, ISSN 0950-382X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14501

Roadmap on emerging concepts in the physical biology of bacterial biofilms: From surface sensing to community formation

Autorzy: Gerard C. L. Wong; Jyot D. Antani; Pushkar P. Lele; Jing Chen; Beiyan Nan; Marco Kühn; Alexandre Persat; Jean Louis Bru; Nina Molin Høyland-Kroghsbo; Albert Siryaporn; Jacinta C. Conrad; Francesco Carrara; Yutaka Yawata; Roman Stocker; Yves V. Brun; Gregory B. Whitfield; Calvin K. Lee; Jaime de Anda; William C. Schmidt; Ramin Golestanian; Ramin Golestanian; George A. O'Toole; Kyle A. Floyd; Fitn
Opublikowane w: Physical Biology, 18 (5), Numer 5, 2021, ISSN 1478-3975
Wydawca: IOP Publishing
DOI: 10.1088/1478-3975/abdc0e

Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity

Autorzy: A. L. Gallego-Hernandez, W. H. DePas, J. H. Park, J. K. Teschler, R. Hartmann, H. Jeckel, K. Drescher, S. Beyhan, D. K. Newman, F. H. Yildiz
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 117/20, 2020, Strona(/y) 11010-11017, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1916571117

Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria

Autorzy: Emilia L. Simmons, Matthew C. Bond, Britt Koskella, Knut Drescher, Vanni Bucci, Carey D. Nadell
Opublikowane w: mSystems, Numer 5/3, 2020, ISSN 2379-5077
Wydawca: American Society of Microbiology
DOI: 10.1128/msystems.00877-19

Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function

Autorzy: Francisco Díaz-Pascual, Raimo Hartmann, Martin Lempp, Lucia Vidakovic, Boya Song, Hannah Jeckel, Kai M. Thormann, Fitnat H. Yildiz, Jörn Dunkel, Hannes Link, Carey D. Nadell, Knut Drescher
Opublikowane w: Nature Microbiology, Numer 4/12, 2019, Strona(/y) 2136-2145, ISSN 2058-5276
Wydawca: Nature Publishing Group
DOI: 10.1038/s41564-019-0579-2

Interkingdom assemblages in human saliva display group-level surface mobility and disease-promoting emergent functions

Autorzy: Zhi Ren, Hannah Jeckel, Aurea Simon-Soro, Zhenting Xiang, Yuan Liu, Indira M. Cavalcanti, Jin Xiao, Nyi-Nyi, Anderson Hara, Knut Drescher, Hyun Koo
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 00278424, 2022, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.2209699119

Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries

Autorzy: Stoyan Yordanov, Konstantin Neuhaus, Raimo Hartmann, Francisco Díaz-Pascual, Lucia Vidakovic, Praveen K. Singh, Knut Drescher
Opublikowane w: Biomedical Optics Express, Numer 12/6, 2021, Strona(/y) 3372, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.420788

Topological Metric Detects Hidden Order in Disordered Media

Autorzy: Dominic J. Skinner, Boya Song, Hannah Jeckel, Eric Jelli, Knut Drescher, Jörn Dunkel
Opublikowane w: Physical Review Letters, Numer 126/4, 2021, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/physrevlett.126.048101

Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms

Autorzy: Simon B. Otto, Marivic Martin, Daniel Schäfer, Raimo Hartmann, Knut Drescher, Susanne Brix, Anna Dragoš, Ákos T. Kovács
Opublikowane w: mSystems, Numer 5/4, 2020, ISSN 2379-5077
Wydawca: American Society of Microbiology
DOI: 10.1128/msystems.00425-20

Division of Labor during Biofilm Matrix Production

Autorzy: Anna Dragoš, Heiko Kiesewalter, Marivic Martin, Chih-Yu Hsu, Raimo Hartmann, Tobias Wechsler, Carsten Eriksen, Susanne Brix, Knut Drescher, Nicola Stanley-Wall, Rolf Kümmerli, Ákos T. Kovács
Opublikowane w: Current Biology, Numer 28/12, 2018, Strona(/y) 1903-1913.e5, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2018.04.046

Phage mobility is a core determinant of phage–bacteria coexistence in biofilms

Autorzy: Matthew Simmons, Knut Drescher, Carey D Nadell, Vanni Bucci
Opublikowane w: The ISME Journal, Numer 12/2, 2017, Strona(/y) 531-543, ISSN 1751-7362
Wydawca: Nature Publishing Group
DOI: 10.1038/ismej.2017.190

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms

Autorzy: Ricardo Martínez-García, Carey D. Nadell, Raimo Hartmann, Knut Drescher, Juan A. Bonachela
Opublikowane w: PLOS Computational Biology, Numer 14/4, 2018, Strona(/y) e1006094, ISSN 1553-7358
Wydawca: PLOS Computational Biology
DOI: 10.1371/journal.pcbi.1006094

Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal

Autorzy: Praveen K. Singh, Sabina Bartalomej, Raimo Hartmann, Hannah Jeckel, Lucia Vidakovic, Carey D. Nadell, Knut Drescher
Opublikowane w: Current Biology, Numer 27/21, 2017, Strona(/y) 3359-3366.e7, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2017.09.041

Dynamic biofilm architecture confers individual and collective mechanisms of viral protection

Autorzy: Lucia Vidakovic, Praveen K. Singh, Raimo Hartmann, Carey D. Nadell, Knut Drescher
Opublikowane w: Nature Microbiology, Numer 3/1, 2018, Strona(/y) 26-31, ISSN 2058-5276
Wydawca: Nature Microbiology
DOI: 10.1038/s41564-017-0050-1

Learning the space-time phase diagram of bacterial swarm expansion

Autorzy: Hannah Jeckel, Eric Jelli, Raimo Hartmann, Praveen K. Singh, Rachel Mok, Jan Frederik Totz, Lucia Vidakovic, Bruno Eckhardt, Jörn Dunkel, Knut Drescher
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 116/5, 2019, Strona(/y) 1489-1494, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1811722116

Emergence of three-dimensional order and structure in growing biofilms

Autorzy: Raimo Hartmann, Praveen K. Singh, Philip Pearce, Rachel Mok, Boya Song, Francisco Díaz-Pascual, Jörn Dunkel, Knut Drescher
Opublikowane w: Nature Physics, Numer 15/3, 2019, Strona(/y) 251-256, ISSN 1745-2473
Wydawca: Nature Publishing Group
DOI: 10.1038/s41567-018-0356-9

Quantitative image analysis of microbial communities with BiofilmQ

Autorzy: Raimo Hartmann, Hannah Jeckel, Eric Jelli, Praveen K. Singh, Sanika Vaidya, Miriam Bayer, Daniel K. H. Rode, Lucia Vidakovic, Francisco Díaz-Pascual, Jiunn C. N. Fong, Anna Dragoš, Olga Lamprecht, Janne G. Thöming, Niklas Netter, Susanne Häussler, Carey D. Nadell, Victor Sourjik, Ákos T. Kovács, Fitnat H. Yildiz, Knut Drescher
Opublikowane w: Nature Microbiology, Numer 6/2, 2021, Strona(/y) 151-156, ISSN 2058-5276
Wydawca: Nature Publication Group
DOI: 10.1038/s41564-020-00817-4

Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells

Autorzy: Matthew C Bond, Lucia Vidakovic, Praveen K Singh, Knut Drescher, Carey D Nadell
Opublikowane w: eLife, Numer 10, 2021, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.65355

RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae

Autorzy: Nikolai Peschek, Roman Herzog, Praveen K. Singh, Marcel Sprenger, Fabian Meyer, Kathrin S. Fröhlich, Luise Schröger, Marc Bramkamp, Knut Drescher, Kai Papenfort
Opublikowane w: Nature Communications, Numer 11/1, 2020, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-19890-8

VxrB Influences Antagonism within Biofilms by Controlling Competition through Extracellular Matrix Production and Type 6 Secretion

Autorzy: Jennifer K. Teschler; Eva Jiménez-Siebert; Hannah Jeckel; Praveen K. Singh; Jin Hwan Park; Stefan Pukatzki; Carey D. Nadell; Knut Drescher; Fitnat H. Yildiz
Opublikowane w: mBio, Numer 21507511, 2022, ISSN 2150-7511
Wydawca: American Society for Microbiology
DOI: 10.1128/mbio.01885-22

A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae

Autorzy: Carmen Schwechheimer, Kassidy Hebert, Sarvind Tripathi, Praveen K. Singh, Kyle A. Floyd, Elise R. Brown, Monique E. Porcella, Jacqueline Osorio, Joseph T. M. Kiblen, Fernando A. Pagliai, Knut Drescher, Seth M. Rubin, Fitnat H. Yildiz
Opublikowane w: PLOS Pathogens, Numer 16/8, 2020, Strona(/y) e1008745, ISSN 1553-7374
Wydawca: PLOS
DOI: 10.1371/journal.ppat.1008745

Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms

Autorzy: Philip Pearce, Boya Song, Dominic J. Skinner, Rachel Mok, Raimo Hartmann, Praveen K. Singh, Hannah Jeckel, Jeffrey S. Oishi, Knut Drescher, Jörn Dunkel
Opublikowane w: Physical Review Letters, Numer 123/25, 2019, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/physrevlett.123.258101

Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate‐dependent autoproteolysis activity

Autorzy: Manuel Maestre‐Reyna, Wei‐Cheng Huang, Wen‐Jin Wu, Praveen K. Singh, Raimo Hartmann, Po‐Hsun Wang, Cheng‐Chung Lee, Takaaki Hikima, Masaki Yamamoto, Yoshitaka Bessho, Knut Drescher, Ming‐Daw Tsai, Andrew H.‐J. Wang
Opublikowane w: IUBMB Life, Numer 73/2, 2021, Strona(/y) 418-431, ISSN 1521-6543
Wydawca: Taylor & Francis
DOI: 10.1002/iub.2439

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