Interaction Dynamics of Bacterial Biofilms with Bacteriophages

Informazioni relative al progetto

BIOFAGE

ID dell’accordo di sovvenzione: 716734

DOI 10.3030/716734

Progetto chiuso

Data della firma CE 7 Ottobre 2016

Data di avvio 1 Gennaio 2017

Data di completamento 31 Agosto 2022

Finanziato da

• EXCELLENT SCIENCE - European Research Council (ERC)

Costo totale € 1 494 963,00

Contributo UE € 1 494 963,00

Coordinato da

UNIVERSITAT BASEL
Switzerland

Pubblicazioni

Peer reviewed articles (25)

Advances and opportunities in image analysis of bacterial cells and communities

Autori: Hannah Jeckel, Knut Drescher
Pubblicato in: FEMS Microbiology Reviews, Numero 45/4, 2021, ISSN 1574-6976
Editore: Oxford University Press
DOI: 10.1093/femsre/fuaa062

Multicellular and unicellular responses of microbial biofilms to stress

Autori: Daniel K.H. Rode, Praveen K. Singh, Knut Drescher
Pubblicato in: Biological Chemistry, Numero 401/12, 2020, Pagina/e 1365-1374, ISSN 1431-6730
Editore: Walter de Gruyter GmbH & Co. KG
DOI: 10.1515/hsz-2020-0213

BacStalk: A comprehensive and interactive image analysis software tool for bacterial cell biology

Autori: Raimo Hartmann, Muriel C. F. Teeseling, Martin Thanbichler, Knut Drescher
Pubblicato in: Molecular Microbiology, Numero 114/1, 2020, Pagina/e 140-150, ISSN 0950-382X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14501

Roadmap on emerging concepts in the physical biology of bacterial biofilms: From surface sensing to community formation

Autori: Gerard C. L. Wong; Jyot D. Antani; Pushkar P. Lele; Jing Chen; Beiyan Nan; Marco Kühn; Alexandre Persat; Jean Louis Bru; Nina Molin Høyland-Kroghsbo; Albert Siryaporn; Jacinta C. Conrad; Francesco Carrara; Yutaka Yawata; Roman Stocker; Yves V. Brun; Gregory B. Whitfield; Calvin K. Lee; Jaime de Anda; William C. Schmidt; Ramin Golestanian; Ramin Golestanian; George A. O'Toole; Kyle A. Floyd; Fitn
Pubblicato in: Physical Biology, 18 (5), Numero 5, 2021, ISSN 1478-3975
Editore: IOP Publishing
DOI: 10.1088/1478-3975/abdc0e

Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity

Autori: A. L. Gallego-Hernandez, W. H. DePas, J. H. Park, J. K. Teschler, R. Hartmann, H. Jeckel, K. Drescher, S. Beyhan, D. K. Newman, F. H. Yildiz
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 117/20, 2020, Pagina/e 11010-11017, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1916571117

Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria

Autori: Emilia L. Simmons, Matthew C. Bond, Britt Koskella, Knut Drescher, Vanni Bucci, Carey D. Nadell
Pubblicato in: mSystems, Numero 5/3, 2020, ISSN 2379-5077
Editore: American Society of Microbiology
DOI: 10.1128/msystems.00877-19

Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function

Autori: Francisco Díaz-Pascual, Raimo Hartmann, Martin Lempp, Lucia Vidakovic, Boya Song, Hannah Jeckel, Kai M. Thormann, Fitnat H. Yildiz, Jörn Dunkel, Hannes Link, Carey D. Nadell, Knut Drescher
Pubblicato in: Nature Microbiology, Numero 4/12, 2019, Pagina/e 2136-2145, ISSN 2058-5276
Editore: Nature Publishing Group
DOI: 10.1038/s41564-019-0579-2

Interkingdom assemblages in human saliva display group-level surface mobility and disease-promoting emergent functions

Autori: Zhi Ren, Hannah Jeckel, Aurea Simon-Soro, Zhenting Xiang, Yuan Liu, Indira M. Cavalcanti, Jin Xiao, Nyi-Nyi, Anderson Hara, Knut Drescher, Hyun Koo
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 00278424, 2022, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.2209699119

Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries

Autori: Stoyan Yordanov, Konstantin Neuhaus, Raimo Hartmann, Francisco Díaz-Pascual, Lucia Vidakovic, Praveen K. Singh, Knut Drescher
Pubblicato in: Biomedical Optics Express, Numero 12/6, 2021, Pagina/e 3372, ISSN 2156-7085
Editore: The Optical Society
DOI: 10.1364/boe.420788

Topological Metric Detects Hidden Order in Disordered Media

Autori: Dominic J. Skinner, Boya Song, Hannah Jeckel, Eric Jelli, Knut Drescher, Jörn Dunkel
Pubblicato in: Physical Review Letters, Numero 126/4, 2021, ISSN 0031-9007
Editore: American Physical Society
DOI: 10.1103/physrevlett.126.048101

Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms

Autori: Simon B. Otto, Marivic Martin, Daniel Schäfer, Raimo Hartmann, Knut Drescher, Susanne Brix, Anna Dragoš, Ákos T. Kovács
Pubblicato in: mSystems, Numero 5/4, 2020, ISSN 2379-5077
Editore: American Society of Microbiology
DOI: 10.1128/msystems.00425-20

Division of Labor during Biofilm Matrix Production

Autori: Anna Dragoš, Heiko Kiesewalter, Marivic Martin, Chih-Yu Hsu, Raimo Hartmann, Tobias Wechsler, Carsten Eriksen, Susanne Brix, Knut Drescher, Nicola Stanley-Wall, Rolf Kümmerli, Ákos T. Kovács
Pubblicato in: Current Biology, Numero 28/12, 2018, Pagina/e 1903-1913.e5, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2018.04.046

Phage mobility is a core determinant of phage–bacteria coexistence in biofilms

Autori: Matthew Simmons, Knut Drescher, Carey D Nadell, Vanni Bucci
Pubblicato in: The ISME Journal, Numero 12/2, 2017, Pagina/e 531-543, ISSN 1751-7362
Editore: Nature Publishing Group
DOI: 10.1038/ismej.2017.190

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms

Autori: Ricardo Martínez-García, Carey D. Nadell, Raimo Hartmann, Knut Drescher, Juan A. Bonachela
Pubblicato in: PLOS Computational Biology, Numero 14/4, 2018, Pagina/e e1006094, ISSN 1553-7358
Editore: PLOS Computational Biology
DOI: 10.1371/journal.pcbi.1006094

Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal

Autori: Praveen K. Singh, Sabina Bartalomej, Raimo Hartmann, Hannah Jeckel, Lucia Vidakovic, Carey D. Nadell, Knut Drescher
Pubblicato in: Current Biology, Numero 27/21, 2017, Pagina/e 3359-3366.e7, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2017.09.041

Dynamic biofilm architecture confers individual and collective mechanisms of viral protection

Autori: Lucia Vidakovic, Praveen K. Singh, Raimo Hartmann, Carey D. Nadell, Knut Drescher
Pubblicato in: Nature Microbiology, Numero 3/1, 2018, Pagina/e 26-31, ISSN 2058-5276
Editore: Nature Microbiology
DOI: 10.1038/s41564-017-0050-1

Learning the space-time phase diagram of bacterial swarm expansion

Autori: Hannah Jeckel, Eric Jelli, Raimo Hartmann, Praveen K. Singh, Rachel Mok, Jan Frederik Totz, Lucia Vidakovic, Bruno Eckhardt, Jörn Dunkel, Knut Drescher
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 116/5, 2019, Pagina/e 1489-1494, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1811722116

Emergence of three-dimensional order and structure in growing biofilms

Autori: Raimo Hartmann, Praveen K. Singh, Philip Pearce, Rachel Mok, Boya Song, Francisco Díaz-Pascual, Jörn Dunkel, Knut Drescher
Pubblicato in: Nature Physics, Numero 15/3, 2019, Pagina/e 251-256, ISSN 1745-2473
Editore: Nature Publishing Group
DOI: 10.1038/s41567-018-0356-9

Quantitative image analysis of microbial communities with BiofilmQ

Autori: Raimo Hartmann, Hannah Jeckel, Eric Jelli, Praveen K. Singh, Sanika Vaidya, Miriam Bayer, Daniel K. H. Rode, Lucia Vidakovic, Francisco Díaz-Pascual, Jiunn C. N. Fong, Anna Dragoš, Olga Lamprecht, Janne G. Thöming, Niklas Netter, Susanne Häussler, Carey D. Nadell, Victor Sourjik, Ákos T. Kovács, Fitnat H. Yildiz, Knut Drescher
Pubblicato in: Nature Microbiology, Numero 6/2, 2021, Pagina/e 151-156, ISSN 2058-5276
Editore: Nature Publication Group
DOI: 10.1038/s41564-020-00817-4

Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells

Autori: Matthew C Bond, Lucia Vidakovic, Praveen K Singh, Knut Drescher, Carey D Nadell
Pubblicato in: eLife, Numero 10, 2021, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.65355

RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae

Autori: Nikolai Peschek, Roman Herzog, Praveen K. Singh, Marcel Sprenger, Fabian Meyer, Kathrin S. Fröhlich, Luise Schröger, Marc Bramkamp, Knut Drescher, Kai Papenfort
Pubblicato in: Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-19890-8

VxrB Influences Antagonism within Biofilms by Controlling Competition through Extracellular Matrix Production and Type 6 Secretion

Autori: Jennifer K. Teschler; Eva Jiménez-Siebert; Hannah Jeckel; Praveen K. Singh; Jin Hwan Park; Stefan Pukatzki; Carey D. Nadell; Knut Drescher; Fitnat H. Yildiz
Pubblicato in: mBio, Numero 21507511, 2022, ISSN 2150-7511
Editore: American Society for Microbiology
DOI: 10.1128/mbio.01885-22

A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae

Autori: Carmen Schwechheimer, Kassidy Hebert, Sarvind Tripathi, Praveen K. Singh, Kyle A. Floyd, Elise R. Brown, Monique E. Porcella, Jacqueline Osorio, Joseph T. M. Kiblen, Fernando A. Pagliai, Knut Drescher, Seth M. Rubin, Fitnat H. Yildiz
Pubblicato in: PLOS Pathogens, Numero 16/8, 2020, Pagina/e e1008745, ISSN 1553-7374
Editore: PLOS
DOI: 10.1371/journal.ppat.1008745

Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms

Autori: Philip Pearce, Boya Song, Dominic J. Skinner, Rachel Mok, Raimo Hartmann, Praveen K. Singh, Hannah Jeckel, Jeffrey S. Oishi, Knut Drescher, Jörn Dunkel
Pubblicato in: Physical Review Letters, Numero 123/25, 2019, ISSN 0031-9007
Editore: American Physical Society
DOI: 10.1103/physrevlett.123.258101

Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate‐dependent autoproteolysis activity

Autori: Manuel Maestre‐Reyna, Wei‐Cheng Huang, Wen‐Jin Wu, Praveen K. Singh, Raimo Hartmann, Po‐Hsun Wang, Cheng‐Chung Lee, Takaaki Hikima, Masaki Yamamoto, Yoshitaka Bessho, Knut Drescher, Ming‐Daw Tsai, Andrew H.‐J. Wang
Pubblicato in: IUBMB Life, Numero 73/2, 2021, Pagina/e 418-431, ISSN 1521-6543
Editore: Taylor & Francis
DOI: 10.1002/iub.2439