Interaction Dynamics of Bacterial Biofilms with Bacteriophages

Publicaciones

Advances and opportunities in image analysis of bacterial cells and communities

Autores: Hannah Jeckel, Knut Drescher
Publicado en: FEMS Microbiology Reviews, Edición 45/4, 2021, ISSN 1574-6976
Editor: Oxford University Press
DOI: 10.1093/femsre/fuaa062

Multicellular and unicellular responses of microbial biofilms to stress

Autores: Daniel K.H. Rode, Praveen K. Singh, Knut Drescher
Publicado en: Biological Chemistry, Edición 401/12, 2020, Página(s) 1365-1374, ISSN 1431-6730
Editor: Walter de Gruyter GmbH & Co. KG
DOI: 10.1515/hsz-2020-0213

BacStalk: A comprehensive and interactive image analysis software tool for bacterial cell biology

Autores: Raimo Hartmann, Muriel C. F. Teeseling, Martin Thanbichler, Knut Drescher
Publicado en: Molecular Microbiology, Edición 114/1, 2020, Página(s) 140-150, ISSN 0950-382X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/mmi.14501

Roadmap on emerging concepts in the physical biology of bacterial biofilms: From surface sensing to community formation

Autores: Gerard C. L. Wong; Jyot D. Antani; Pushkar P. Lele; Jing Chen; Beiyan Nan; Marco Kühn; Alexandre Persat; Jean Louis Bru; Nina Molin Høyland-Kroghsbo; Albert Siryaporn; Jacinta C. Conrad; Francesco Carrara; Yutaka Yawata; Roman Stocker; Yves V. Brun; Gregory B. Whitfield; Calvin K. Lee; Jaime de Anda; William C. Schmidt; Ramin Golestanian; Ramin Golestanian; George A. O'Toole; Kyle A. Floyd; Fitn
Publicado en: Physical Biology, 18 (5), Edición 5, 2021, ISSN 1478-3975
Editor: IOP Publishing
DOI: 10.1088/1478-3975/abdc0e

Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity

Autores: A. L. Gallego-Hernandez, W. H. DePas, J. H. Park, J. K. Teschler, R. Hartmann, H. Jeckel, K. Drescher, S. Beyhan, D. K. Newman, F. H. Yildiz
Publicado en: Proceedings of the National Academy of Sciences, Edición 117/20, 2020, Página(s) 11010-11017, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1916571117

Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria

Autores: Emilia L. Simmons, Matthew C. Bond, Britt Koskella, Knut Drescher, Vanni Bucci, Carey D. Nadell
Publicado en: mSystems, Edición 5/3, 2020, ISSN 2379-5077
Editor: American Society of Microbiology
DOI: 10.1128/msystems.00877-19

Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function

Autores: Francisco Díaz-Pascual, Raimo Hartmann, Martin Lempp, Lucia Vidakovic, Boya Song, Hannah Jeckel, Kai M. Thormann, Fitnat H. Yildiz, Jörn Dunkel, Hannes Link, Carey D. Nadell, Knut Drescher
Publicado en: Nature Microbiology, Edición 4/12, 2019, Página(s) 2136-2145, ISSN 2058-5276
Editor: Nature Publishing Group
DOI: 10.1038/s41564-019-0579-2

Interkingdom assemblages in human saliva display group-level surface mobility and disease-promoting emergent functions

Autores: Zhi Ren, Hannah Jeckel, Aurea Simon-Soro, Zhenting Xiang, Yuan Liu, Indira M. Cavalcanti, Jin Xiao, Nyi-Nyi, Anderson Hara, Knut Drescher, Hyun Koo
Publicado en: Proceedings of the National Academy of Sciences, Edición 00278424, 2022, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.2209699119

Single-objective high-resolution confocal light sheet fluorescence microscopy for standard biological sample geometries

Autores: Stoyan Yordanov, Konstantin Neuhaus, Raimo Hartmann, Francisco Díaz-Pascual, Lucia Vidakovic, Praveen K. Singh, Knut Drescher
Publicado en: Biomedical Optics Express, Edición 12/6, 2021, Página(s) 3372, ISSN 2156-7085
Editor: The Optical Society
DOI: 10.1364/boe.420788

Topological Metric Detects Hidden Order in Disordered Media

Autores: Dominic J. Skinner, Boya Song, Hannah Jeckel, Eric Jelli, Knut Drescher, Jörn Dunkel
Publicado en: Physical Review Letters, Edición 126/4, 2021, ISSN 0031-9007
Editor: American Physical Society
DOI: 10.1103/physrevlett.126.048101

Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms

Autores: Simon B. Otto, Marivic Martin, Daniel Schäfer, Raimo Hartmann, Knut Drescher, Susanne Brix, Anna Dragoš, Ákos T. Kovács
Publicado en: mSystems, Edición 5/4, 2020, ISSN 2379-5077
Editor: American Society of Microbiology
DOI: 10.1128/msystems.00425-20

Division of Labor during Biofilm Matrix Production

Autores: Anna Dragoš, Heiko Kiesewalter, Marivic Martin, Chih-Yu Hsu, Raimo Hartmann, Tobias Wechsler, Carsten Eriksen, Susanne Brix, Knut Drescher, Nicola Stanley-Wall, Rolf Kümmerli, Ákos T. Kovács
Publicado en: Current Biology, Edición 28/12, 2018, Página(s) 1903-1913.e5, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2018.04.046

Phage mobility is a core determinant of phage–bacteria coexistence in biofilms

Autores: Matthew Simmons, Knut Drescher, Carey D Nadell, Vanni Bucci
Publicado en: The ISME Journal, Edición 12/2, 2017, Página(s) 531-543, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/ismej.2017.190

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms

Autores: Ricardo Martínez-García, Carey D. Nadell, Raimo Hartmann, Knut Drescher, Juan A. Bonachela
Publicado en: PLOS Computational Biology, Edición 14/4, 2018, Página(s) e1006094, ISSN 1553-7358
Editor: PLOS Computational Biology
DOI: 10.1371/journal.pcbi.1006094

Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal

Autores: Praveen K. Singh, Sabina Bartalomej, Raimo Hartmann, Hannah Jeckel, Lucia Vidakovic, Carey D. Nadell, Knut Drescher
Publicado en: Current Biology, Edición 27/21, 2017, Página(s) 3359-3366.e7, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2017.09.041

Dynamic biofilm architecture confers individual and collective mechanisms of viral protection

Autores: Lucia Vidakovic, Praveen K. Singh, Raimo Hartmann, Carey D. Nadell, Knut Drescher
Publicado en: Nature Microbiology, Edición 3/1, 2018, Página(s) 26-31, ISSN 2058-5276
Editor: Nature Microbiology
DOI: 10.1038/s41564-017-0050-1

Learning the space-time phase diagram of bacterial swarm expansion

Autores: Hannah Jeckel, Eric Jelli, Raimo Hartmann, Praveen K. Singh, Rachel Mok, Jan Frederik Totz, Lucia Vidakovic, Bruno Eckhardt, Jörn Dunkel, Knut Drescher
Publicado en: Proceedings of the National Academy of Sciences, Edición 116/5, 2019, Página(s) 1489-1494, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1811722116

Emergence of three-dimensional order and structure in growing biofilms

Autores: Raimo Hartmann, Praveen K. Singh, Philip Pearce, Rachel Mok, Boya Song, Francisco Díaz-Pascual, Jörn Dunkel, Knut Drescher
Publicado en: Nature Physics, Edición 15/3, 2019, Página(s) 251-256, ISSN 1745-2473
Editor: Nature Publishing Group
DOI: 10.1038/s41567-018-0356-9

Quantitative image analysis of microbial communities with BiofilmQ

Autores: Raimo Hartmann, Hannah Jeckel, Eric Jelli, Praveen K. Singh, Sanika Vaidya, Miriam Bayer, Daniel K. H. Rode, Lucia Vidakovic, Francisco Díaz-Pascual, Jiunn C. N. Fong, Anna Dragoš, Olga Lamprecht, Janne G. Thöming, Niklas Netter, Susanne Häussler, Carey D. Nadell, Victor Sourjik, Ákos T. Kovács, Fitnat H. Yildiz, Knut Drescher
Publicado en: Nature Microbiology, Edición 6/2, 2021, Página(s) 151-156, ISSN 2058-5276
Editor: Nature Publication Group
DOI: 10.1038/s41564-020-00817-4

Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells

Autores: Matthew C Bond, Lucia Vidakovic, Praveen K Singh, Knut Drescher, Carey D Nadell
Publicado en: eLife, Edición 10, 2021, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.65355

RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae

Autores: Nikolai Peschek, Roman Herzog, Praveen K. Singh, Marcel Sprenger, Fabian Meyer, Kathrin S. Fröhlich, Luise Schröger, Marc Bramkamp, Knut Drescher, Kai Papenfort
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-19890-8

VxrB Influences Antagonism within Biofilms by Controlling Competition through Extracellular Matrix Production and Type 6 Secretion

Autores: Jennifer K. Teschler; Eva Jiménez-Siebert; Hannah Jeckel; Praveen K. Singh; Jin Hwan Park; Stefan Pukatzki; Carey D. Nadell; Knut Drescher; Fitnat H. Yildiz
Publicado en: mBio, Edición 21507511, 2022, ISSN 2150-7511
Editor: American Society for Microbiology
DOI: 10.1128/mbio.01885-22

A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae

Autores: Carmen Schwechheimer, Kassidy Hebert, Sarvind Tripathi, Praveen K. Singh, Kyle A. Floyd, Elise R. Brown, Monique E. Porcella, Jacqueline Osorio, Joseph T. M. Kiblen, Fernando A. Pagliai, Knut Drescher, Seth M. Rubin, Fitnat H. Yildiz
Publicado en: PLOS Pathogens, Edición 16/8, 2020, Página(s) e1008745, ISSN 1553-7374
Editor: PLOS
DOI: 10.1371/journal.ppat.1008745

Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms

Autores: Philip Pearce, Boya Song, Dominic J. Skinner, Rachel Mok, Raimo Hartmann, Praveen K. Singh, Hannah Jeckel, Jeffrey S. Oishi, Knut Drescher, Jörn Dunkel
Publicado en: Physical Review Letters, Edición 123/25, 2019, ISSN 0031-9007
Editor: American Physical Society
DOI: 10.1103/physrevlett.123.258101

Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate‐dependent autoproteolysis activity

Autores: Manuel Maestre‐Reyna, Wei‐Cheng Huang, Wen‐Jin Wu, Praveen K. Singh, Raimo Hartmann, Po‐Hsun Wang, Cheng‐Chung Lee, Takaaki Hikima, Masaki Yamamoto, Yoshitaka Bessho, Knut Drescher, Ming‐Daw Tsai, Andrew H.‐J. Wang
Publicado en: IUBMB Life, Edición 73/2, 2021, Página(s) 418-431, ISSN 1521-6543
Editor: Taylor & Francis
DOI: 10.1002/iub.2439

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