Establishment of a Center of Plant Systems Biology and Biotechnology for the translation of fundamental research into sustainable bio-based technologies in Bulgaria

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

E-newsletter 2

E-newsletter

New video clip
E-newsletter 4

Enewsletter

E-newsletter 5

E-newsletter

Updated project leaflet
E-newsletter 3

Enewsletter

CPSBB Website

CPSBB Website established

E-newsletter 1

E-newsletter

Publicaciones

Reactive Oxygen Species and Abiotic Stress in Plants

Autores: Tsanko Gechev, Veselin Petrov
Publicado en: International Journal of Molecular Sciences, Edición 21/20, 2020, Página(s) 7433, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21207433

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

Autores: Youjun Zhang, Ina Krahnert, Antje Bolze, Yves Gibon, Alisdair R. Fernie
Publicado en: Current Protocols in Plant Biology, Edición 5/3, 2020, ISSN 2379-8068
Editor: Wiley
DOI: 10.1002/cppb.20115

Bringing more players into play: Leveraging stress in genome wide association studies

Autores: Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R.
Publicado en: Journal of Plant Physiology, 2022, ISSN 0176-1617
Editor: Elsevier BV
DOI: 10.1016/j.jplph.2022.153657

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

Autores: Wang, J.Y., Alseekh, S., Xiao, T. et al.
Publicado en: Communications Biology, 2021, ISSN 2399-3642
Editor: Communications Biology
DOI: 10.1038/s42003-021-02740-8

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism

Autores: Sandra E Zimmermann, Ruben M Benstein, María Flores-Tornero, Samira Blau, Armand D Anoman, Sara Rosa-Téllez, Silke C Gerlich, Mohamed A Salem, Saleh Alseekh, Stanislav Kopriva
Publicado en: Plant Physiology, 2021, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab167

Green Biologics: Harnessing the Power of Plants to Produce Pharmaceuticals

Autores: Gergana Zahmanova, Alaa A. A. Aljabali, Katerina Takova, George Minkov, Murtaza M. Tambuwala, Ivan Minkov, George P. Lomonossoff
Publicado en: International Journal of Molecular Sciences, Edición 24, 2025, Página(s) 17575, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms242417575

Metabolons, enzyme–enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Plant Communications, Edición 2/1, 2021, Página(s) 100081, ISSN 2590-3462
Editor: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100081

Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants?

Autores: Federico Scossa, Alisdair R.Fernie
Publicado en: Computational and Structural Biotechnology Journal, 2021, ISSN 2001-0370
Editor: Elsevier
DOI: 10.1016/j.csbj.2021.03.008

Anthocyanins, multi-functional natural products of industrial relevance: Recent biotechnological advances

Autores: Tarun Belwal, Gopal Singh, Philippe Jeandet, Aseesh Pandey, Lalit Giri, Sudipta Ramola, Indra D. Bhatt, Petras Rimantas Venskutonis, Milen I. Georgiev, Christophe Clément, Zisheng Luo
Publicado en: Biotechnology Advances, Edición 43, 2020, Página(s) 107600, ISSN 0734-9750
Editor: Elsevier BV
DOI: 10.1016/j.biotechadv.2020.107600

Synthetic biology identifies the minimal gene set required for paclitaxel biosynthesis in a plant chassis

Autores: Youjun Zhang, Lorenz Wiese, Hao Fang, Saleh Alseekh, Leonardo Perez de Souza, Federico Scossa, John J. Molloy, Mathias Christmann, Alisdair R. Fernie
Publicado en: Molecular Plant, Edición 16, 2023, Página(s) 1951-1961, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2023.10.016

Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1)

Autores: Timm, S., Klaas, N., Niemann, J., Jahnke, K., Alseekh, S., Zhang, Y., Souza, P. V., Hou, L.-Y., Geigenberger, P., Daloso, D. M
Publicado en: bioRxiv, 2022, ISSN 2692-8205
Editor: bioRxiv
DOI: 10.1101/2022.04.02.486831

Antiobesity molecules of natural origin: Call for lead finding acceleration

Autores: Georgiev M.I., Vasileva L.V., Savova M.S.
Publicado en: Food Frontiers, 2021, ISSN 2643-8429
Editor: Wiley
DOI: 10.1002/fft2.59

Screening of pepper (Capsicum spp.) accessions for infestation by pests in open field conditions.

Autores: 47. Yankova V., Todorova V., Markova D.
Publicado en: Bulgarian Journal of Agricultural Science. 26 (4), 2020, Página(s) 841-846, ISSN 1310-0351
Editor: Agricultural Academy
DOI: 10.5281/zenodo.4706815

Azacytidine arrests ripening in cultivated strawberry (Fragaria × ananassa) by repressing key genes and altering hormone contents

Autores: Félix Juan Martínez-Rivas, Rosario Blanco-Portales, Francisco Javier Molina-Hidalgo, José Luis Caballero, Leonardo Perez de Souza, Saleh Alseekh, Alisdair R. Fernie, Juan Muñoz-Blanco, Antonio Rodríguez-Franco
Publicado en: BMC Plant Biology, Edición 22, 2023, ISSN 1471-2229
Editor: BioMed Central
DOI: 10.1186/s12870-022-03670-1

An Abundance and Interaction Encyclopedia of Plant Protein Function

Autores: Youjun Zhang, Aleksandra Skirycz, Alisdair R. Fernie
Publicado en: Trends in Plant Science, Edición 25/7, 2020, Página(s) 627-630, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.006

Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming

Autores: Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R.
Publicado en: Autophagy, 2022, ISSN 1554-8627
Editor: Landes Bioscience
DOI: 10.1080/15548627.2021.2003041

NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis

Autores: Nouf Owdah Alshareef, Sophie L. Otterbach, Annapurna Devi Allu, Yong H. Woo, Tobias de Werk, Iman Kamranfar, Bernd Mueller-Roeber, Mark Tester, Salma Balazadeh, Sandra M. Schmöckel
Publicado en: Scientific Reports, Edición 12, 2024, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-14429-x

Priming with a Seaweed Extract Strongly Improves Drought Tolerance in Arabidopsis

Autores: Fiaz Rasul, Saurabh Gupta, Justyna Jadwiga Olas, Tsanko Gechev, Neerakkal Sujeeth and Bernd Mueller-Roeber
Publicado en: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22031469

A deep learning-based model for plant lesion segmentation, subtype identification, and survival probability estimation

Autores: Muhammad Shoaib, Babar Shah, Tariq Hussain, Akhtar Ali, Asad Ullah, Fayadh Alenezi, Tsanko Gechev, Farman Ali, Ikram Syed
Publicado en: Frontiers in Plant Science, Edición 13, 2022, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.1095547

A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator

Autores: Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R.
Publicado en: Plant Physiology, 2022, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac200

On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Biomolecules, Edición 10/8, 2020, Página(s) 1107, ISSN 2218-273X
Editor: MDPI
DOI: 10.3390/biom10081107

Natural products in drug discovery: advances and opportunities

Autores: Atanasov A.G., Zotchev S.B., Dirsch V.M., Orhan I.E., Banach M., Rollinger J.M., Barreca D., Weckwerth W., Bauer R., Bayer E.A., Majeed M., Bishayee A., Bochkov V., Bonn G.K., Braidy N., Bucar F., Cifuentes A., D’Onofrio G., Bodkin M., Diederich M., Dinkova-Kostova A.T., Efferth T., El Bairi K., Arkells N., Fan T-P., Fiebich B.L., Freissmuth M., Georgiev M.I. et al.
Publicado en: Nature Reviews in Drug Discovery, 2021, ISSN 1474-1776
Editor: Nature Publishing Group
DOI: 10.1038/s41573-020-00114-z

The Transcriptional Corepressor HOS15 Mediates Dark-Induced Leaf Senescence in Arabidopsis

Autores: Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J.
Publicado en: Frontiers in Plant Science, 2022, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.828264

Analysis of the complete mitochondrial genome sequence of the resurrection plant Haberlea rhodopensis

Autores: Baev V., Ivanova Z., Yahubyan G., Toneva V., Apostolova E., Minkov G., Minkov I.
Publicado en: Acta Biochimica Polonica, 2021, ISSN 0001-527X
Editor: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2020_5555

Rapid Identification of Protein‐Protein Interactions in Plants

Autores: Youjun Zhang, Roberto Natale, Adilson Pereira Domingues, Mitchell Rey Toleco, Beata Siemiatkowska, Norma Fàbregas, Alisdair R. Fernie
Publicado en: Current Protocols in Plant Biology, Edición 4/4, 2019, ISSN 2379-8068
Editor: Wiley
DOI: 10.1002/cppb.20099

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Autores: Prashant K. Pandey, Jing Yu, Nooshin Omranian, Saleh Alseekh, Neha Vaid, Alisdair R. Fernie, Zoran Nikoloski, Roosa A. E. Laitinen
Publicado en: Plant Direct, Edición 3/11, 2019, ISSN 2475-4455
Editor: Wiley
DOI: 10.1002/pld3.186

Obesity and NRF2-mediated cytoprotection: Where is the missing link?

Autores: Liliya V. Vasileva, Martina S. Savova, Kristiana M. Amirova, Albena T. Dinkova-Kostova, Milen I. Georgiev
Publicado en: Pharmacological Research, Edición 156, 2020, Página(s) 104760, ISSN 1043-6618
Editor: Academic Press
DOI: 10.1016/j.phrs.2020.104760

Current Insights into the Molecular Mode of Action of Seaweed-Based Biostimulants and the Sustainability of Seaweeds as Raw Material Resources

Autores: Neerakkal Sujeeth, Veselin Petrov, Kieran J. Guinan, Fiaz Rasul, John T. O’Sullivan, Tsanko S. Gechev
Publicado en: International Journal of Molecular Sciences, Edición 23, 2025, Página(s) 7654, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23147654

Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion

Autores: Jinbo Li, Yu Meng, Kaixuan Zhang, Qiong Li, Shijuan Li, Bingliang Xu, Milen I Georgiev, Meiliang Zhou
Publicado en: Plant Physiology, Edición 185/2, 2020, Página(s) 369-384, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa043

Heat shock factor HSFA2 fine-tunes resetting of thermomemory via plastidic metalloprotease FtsH6

Autores: Mastoureh Sedaghatmehr, Benno Stüwe, Bernd Mueller-Roeber, Salma Balazadeh
Publicado en: Journal of Experimental Botany, Edición 73, 2022, Página(s) 6394-6404, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erac257

Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

Autores: Leonardo Perez De Souza, Saleh Alseekh, Yariv Brotman, Alisdair R Fernie
Publicado en: Expert Review of Proteomics, Edición 17/4, 2020, Página(s) 243-255, ISSN 1478-9450
Editor: Future Drugs Ltd.
DOI: 10.1080/14789450.2020.1766975

The Re-Emergence of Hepatitis E Virus in Europe and Vaccine Development

Autores: Gergana Zahmanova, Katerina Takova, Valeria Tonova, Tsvetoslav Koynarski, Laura L. Lukov, Ivan Minkov, Maria Pishmisheva, Stanislav Kotsev, Ilia Tsachev, Magdalena Baymakova, Anton P. Andonov
Publicado en: Viruses, Edición 15, 2025, Página(s) 1558, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15071558

Genome-wide association studies: assessing trait characteristics in model and crop plants.

Autores: Alseekh S., Kostova D., Mustafa B., Fernie A.R.
Publicado en: Cellular and Molecular Life Sciences, Edición 1420682X, 2021, ISSN 1420-682X
Editor: Birkhauser Verlag
DOI: 10.1007/s00018-021-03868-w

Autophagy modulates the metabolism and growth of tomato fruit during development

Autores: Saleh Alseekh, Feng Zhu, José G Vallarino, Ewelina M Sokolowska, Takuya Yoshida, Susan Bergmann, Regina Wendenburg, Antje Bolze, Aleksandra Skirycz, Tamar Avin-Wittenberg, Alisdair R Fernie
Publicado en: Horticulture Research, Edición 9, 2022, ISSN 2052-7276
Editor: Oxford University Press (OUP)
DOI: 10.1093/hr/uhac129

The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.

Autores: Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M.
Publicado en: Scientific Report, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-04433-y

Multi‐year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity

Autores: Itay Zemach, Saleh Alseekh, Roni Tadmor‐Levi, Josef Fisher, Shai Torgeman, Shay Trigerman, Julia Nauen, Shdema Filler Hayut, Varda Mann, Edan Rochsar, Richard Finkers, Regina Wendenburg, Sonia Osorio, Susan Bergmann, John E. Lunn, Yaniv Semel, Joseph Hirschberg, Alisdair R. Fernie, Dani Zamir
Publicado en: The Plant Journal, Edición 116, 2023, Página(s) 1136-1151, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16268

Stable and Temporary Enzyme Complexes and Metabolons Involved in Energy and Redox Metabolism

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Antioxidants & Redox Signaling, 2020, ISSN 1523-0864
Editor: Mary Ann Liebert Inc.
DOI: 10.1089/ars.2019.7981

Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change?

Autores: Jorge T. F., Ramalho J. C., Alseekh S., Pais I. P., Leitão A. E., Rodrigues A. P., Scotti-Campos P., Ribeiro-Barros A. I., Fernie A. R., António C.
Publicado en: Metabolites, 2021, ISSN 2218-1989
Editor: MDPI
DOI: 10.3390/metabo11090593

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity

Autores: Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B
Publicado en: The Plant Journal, 2022, ISSN 1365-313X
Editor: Wiley
DOI: 10.1111/tpj.15770

A. thaliana Hybrids Develop Growth Abnormalities through Integration of Stress, Hormone and Growth Signaling

Autores: Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE.
Publicado en: Plant Cell Physiology, 2022, ISSN 1471-9053
Editor: Japanese Society of Plant Physiologists
DOI: 10.1093/pcp/pcac056

Systems biology of resurrection plants

Autores: Gechev T., Lyall R., Petrov V., Bartels D.
Publicado en: Cellular and Molecular Life Sciences, 2021, ISSN 1420-9071
Editor: Springer
DOI: 10.1007/s00018-021-03913-8

Rice metabolic regulatory network spanning the entire life cycle

Autores: Chenkun Yang, Shuangqian Shen, Alisdair R.Fernie, JieLuo
Publicado en: Molecular Plant, 2021, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2021.10.005

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water‐deficit stress

Autores: Mohamed A. Salem, Takuya Yoshida, Leonardo Perez de Souza, Saleh Alseekh, Krzysztof Bajdzienko, Alisdair R. Fernie, Patrick Giavalisco
Publicado en: The Plant Journal, Edición 103/4, 2020, Página(s) 1614-1632, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14800

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism

Autores: Moreno JC, Rojas BE, Vicente R, Gorka M, Matz T, Chodasiewicz M, Peralta-Ariza JS, Zhang Y, Alseekh S, Childs D, Luzarowski M, Nikoloski Z, Zarivach R, Walther D, Hartman MD, Figueroa CM, Iglesias AA, Fernie AR, Skirycz A.
Publicado en: The EMBO Jurnal, 2021, ISSN 1460-2075
Editor: EMBO Press
DOI: 10.15252/embj.2020106800

Metabolomics: towards acceleration of antibacterial plant-based leads discovery

Autores: Sieniawska, E., Georgiev, M.I.
Publicado en: Phytochemistry Reviews, 2021, ISSN 1568-7767
Editor: Kluwer Academic Publishers
DOI: 10.1007/s11101-021-09762-4

Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation

Autores: He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M.
Publicado en: New Phytologist, 2022, ISSN 1469-8137
Editor: Wiley
DOI: 10.1111/nph.18306

Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Autores: Hao Tong, Anika Küken, Zoran Nikoloski
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-16279-5

Network Analysis Provides Insight into Tomato Lipid Metabolism

Autores: Anastasiya Kuhalskaya, Micha Wijesingha Ahchige, Leonardo Perez de Souza, José Vallarino, Yariv Brotman, Saleh Alseekh
Publicado en: Metabolites, Edición 10/4, 2020, Página(s) 152, ISSN 2218-1989
Editor: MDPI
DOI: 10.3390/metabo10040152

Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process

Autores: Martínez-Rivas FJ, Blanco-Portales R, Moyano E, Alseekh S, Caballero JL, Schwab W, Fernie AR, Muñoz-Blanco J, Molina-Hidalgo FJ
Publicado en: Horticulture Research, 2022, ISSN 2052-7276
Editor: Oxford Academic
DOI: 10.1093/hr/uhac095

Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles

Autores: Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M.
Publicado en: Antioxidants, 2022, ISSN 2076-3921
Editor: MDPI
DOI: 10.3390/antiox11030462

Plant cell cultures as heterologous bio-factories for secondary metabolite production

Autores: Tong Wu, Sandra M.Kerbler, Alisdair R.Fernie, YoujunZhang
Publicado en: Plant Communications, 2021, ISSN 2590-3462
Editor: Elsevier Inc.
DOI: 10.1016/j.xplc.2021.100235

Metabolomic selection–based machine learning improves fruit taste prediction

Autores: Fernie A.R., Alseekh S.
Publicado en: Proceedings of the National Academy of Sciences of the United States of America, 2022, ISSN 1091-6490
Editor: National Academy of Science
DOI: 10.1073/pnas.2201078119

Development and Optimization of an Enzyme Immunoassay to Detect Serum Antibodies against the Hepatitis E Virus in Pigs, Using Plant-Derived ORF2 Recombinant Protein

Autores: Katerina Takova, Tsvetoslav Koynarski, George Minkov, Valentina Toneva, Eugenia Mardanova, Nikolai Ravin, Georgi L. Lukov and Gergana Zahmanova
Publicado en: Plant Based Vaccines—A Powerhouse for Global Health 2.0, 2021, ISSN 2076-393X
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines9090991

Genotyping by Sequencing Reveals Genetic Relatedness of Southwestern U.S. Blue Maize Landraces

Autores: Nankar A.N., Pratt R.C.
Publicado en: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22073436

Creation of pepper doubled haploids and morphological characterization of androgenic plants

Autores: Grozeva S., Todorova V., Nankar A.N.
Publicado en: Euphytica, 2021, ISSN 0014-2336
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10681-021-02840-w

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

Autores: Eugenia S. Mardanova, Katerina H. Takova, Valentina T. Toneva, Gergana G. Zahmanova, Liudmila M. Tsybalova, Nikolai V. Ravin
Publicado en: Biotechnology Letters, Edición 42/11, 2020, Página(s) 2441-2446, ISSN 0141-5492
Editor: Kluwer Academic Publishers
DOI: 10.1007/s10529-020-02995-x

Biotechnologically Produced Lavandula angustifolia Mill. Extract Rich in Rosmarinic Acid Resolves Psoriasis-Related Inflammation Through Janus Kinase/Signal Transducer and Activator of Transcription Signaling

Autores: Koycheva I.K., Vasileva L.V., Amirova K.M., Marchev A.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Publicado en: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Editor: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.680168

The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids

Autores: Youjun Zhang, Federico Scossa, Alisdair R. Fernie
Publicado en: Molecular Plant, 2021, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2021.08.017

Integrating multi-omics data for crop improvement

Autores: Federico Scossa, Saleh Alseekha, Alisdair R.Fernie
Publicado en: Journal of Plant Physiology, 2021, ISSN 0176-1617
Editor: Elsevier BV
DOI: 10.1016/j.jplph.2020.153352

Unravelling the molecular networks that regulate kiwifruit flavor

Autores: Fernie A.R., Alseekh S.
Publicado en: New Phytologist, 2021, ISSN 1469-8137
Editor: Wiley
DOI: 10.1111/nph.17740

Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects

Autores: Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M.
Publicado en: Food Reviews International, 2022, ISSN 8755-9129
Editor: Marcel Dekker Inc.
DOI: 10.1080/87559129.2022.2067175

Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes

Autores: Rafe Lyall, Zoran Nikoloski, Tsanko Gechev
Publicado en: International Journal of Molecular Sciences, Edición 21/23, 2020, Página(s) 9131, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21239131

Pod indehiscence in common bean is associated with the fine regulation of PvMYB26

Autores: Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D., Papa R.
Publicado en: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/eraa553

Regulation of alternative splicing in response to temperature variation in plants

Autores: Sheeba John, Justyna Jadwiga Olas, Bernd Mueller Roeber
Publicado en: Journal of Experimental Botany, Edición 72(18), 2021, Página(s) 6150-6163, ISSN 1460-2431
Editor: Society for Experimental Biology
DOI: 10.1093/jxb/erab232

A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles

Autores: Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M.
Publicado en: Frontiers in Pharmacology, 2022, ISSN 1663-9812
Editor: Frontiers Media S.A.
DOI: 10.3389/fphar.2022.840478

The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe

Autores: Mohamed A.Salem, Ahmed Zayed, Saleh Alseekh, Alisdair R.Fernie, Patrick Giavalisco
Publicado en: Phytochemistry, 2021, ISSN 0031-9422
Editor: Elsevier BV
DOI: 10.1016/j.phytochem.2021.112843

A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species

Autores: Youjun Zhang, Moxian Chen, Beata Siemiatkowska, Mitchell Rey Toleco, Yue Jing, Vivien Strotmann, Jianghua Zhang, Yvonne Stahl, Alisdair R. Fernie
Publicado en: Plant Communications, Edición 1/5, 2020, Página(s) 100028, ISSN 2590-3462
Editor: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100028

Correction to: Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants

Autores: Hongjian Wan , Youjun Zhang , Limin Wu , Guozhi Zhou , Luzhao Pan , Alisdair R Fernie , Yong-Ling Ruan Author Notes
Publicado en: Plant Physiology, Edición 195, 2024, Página(s) 900-900, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiae043

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

Autores: Perez de Souza L., Alseekh S., Scossa F., Fernie A.R.
Publicado en: Nature Methods, 2021, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-021-01116-4

Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem

Autores: Chang Su, Andrzej Kokosza, Xiaonan Xie, Aleš Pěnčík, Youjun Zhang, Pasi Raumonen, Xueping Shi, Sampo Muranen, Melis Kucukoglu Topcu, Juha Immanen, Risto Hagqvist, Omid Safronov, Juan Alonso-Serra, Gugan Eswaran, Mirko Pavicic Venegas, Karin Ljung, Sally Ward, Ari Pekka Mähönen, Kristiina Himanen, Jarkko Salojärvi, Alisdair R. Fernie, Ondřej Novák, Ottoline Leyser, Wojtek Pałubicki, Ykä
Publicado en: Proceedings of the National Academy of Sciences, Edición 120, 2023, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.2308587120

Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids

Autores: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Publicado en: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Editor: Birkhauser Verlag
DOI: 10.1007/s00018-021-03918-3

An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress

Autores: Nikola S. Staykov, Mihail Angelov, Veselin Petrov, Pavel Minkov, Aakansha Kanojia, Kieran J. Guinan, Saleh Alseekh, Alisdair R. Fernie, Neerakkal Sujeeth and Tsanko S. Gechev
Publicado en: Metabolomics in Agriculture Volume 2, 2021, ISSN 2218-1989
Editor: MDPI
DOI: 10.3390/metabo11010024

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits

Autores: Yi Ren, Maoying Li, Shaogui Guo, Honghe Sun, Jianyu Zhao, Jie Zhang, Guangmin Liu, Hongju He, Shouwei Tian, Yongtao Yu, Guoyi Gong, Haiying Zhang, Xiaolan Zhang, Saleh Alseekh, Alisdair R Fernie, Henrik V Scheller, Yong Xu
Publicado en: The Plant Cell, 2021, ISSN 1040-4651
Editor: American Society of Plant Biologists
DOI: 10.1093/plcell/koab055

The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype

Autores: Liming Zhao, Hao-Jie Wang, Patricia Dalcin Martins, Joost T. van Dongen, Anthony M. Bolger, Romy R. Schmidt, Hai-Chun Jing, Bernd Mueller-Roeber, Jos H. M. Schippers
Publicado en: BMC Plant Biology, Edición 23, 2023, ISSN 1471-2229
Editor: BioMed Central
DOI: 10.1186/s12870-023-04300-0

Biotechnological Exploration of Transformed Root Culture for Value-Added Products

Autores: Min Shi, Pan Liao, Shivraj Hariram Nile, Milen I. Georgiev, Guoyin Kai
Publicado en: Trends in Biotechnology, Edición 39/2, 2021, Página(s) 137-149, ISSN 0167-7799
Editor: Elsevier BV
DOI: 10.1016/j.tibtech.2020.06.012

Multiomics analyses reveal the roles of the ASR1 transcription factor in tomato fruits

Autores: Dominguez P.G., Conti G., Duffy T., Insani M., Alseekh S., Asurmendi S., Fernie A.R., Carrari F.
Publicado en: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erab269

FtBPM3 modulates the orchestration of FtMYB11-mediated flavonoids biosynthesis in Tartary buckwheat

Autores: Ding M., Zhang K., He Y., Zuo Q., Zhao H., He M., Georgiev M.I., Park S.U., Zhou M.
Publicado en: Plant Biotechnology Journal, 2021, ISSN 1467-7652
Editor: Wiley
DOI: 10.1111/pbi.13587

Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.)

Autores: Mohamed A. Salem, Riham A. El-Shiekh, Alisdair R. Fernie, Saleh Alseekh, Ahmed Zayed
Publicado en: Scientific Reports, Edición 12, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-13882-y

Tanshinones from Salvia miltiorrhiza inhibit Mycobacterium tuberculosis via disruption of the cell envelope surface and oxidative stress

Autores: Elwira Sieniawska, Rafal Sawicki, Andrey S.Marchev, Wieslaw Truszkiewicz, Milen I.Georgiev
Publicado en: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2021.112405

Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism

Autores: M. Toleco, Thomas Naake, Youjun Zhang, Joshua Heazlewood, Alisdair R. Fernie
Publicado en: Plants, Edición 9/1, 2020, Página(s) 117, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants9010117

Using Metabolomics to Assist Plant Breeding.

Autores: Alseekh S., Fernie A.R.
Publicado en: Methods in Molecular Biology, 2021, ISSN 1064-3745
Editor: Humana Press, Inc.
DOI: 10.1007/978-1-0716-1201-9_3

Large-scale multi-omics genome-wide association studies (Mo-GWAS): guidelines for sample preparation and normalization

Autores: Bulut M., Fernie A.R., Alseekh S.
Publicado en: Jove-Journal of Visualized Experiments, 2021, ISSN 1940-087X
Editor: MYJoVE Corporation
DOI: 10.3791/62732

Biotechnologically-Produced Myconoside and Calceolarioside E Induce Nrf2 Expression in Neutrophils

Autores: Amirova K.M., Dimitrova P.A., Marchev A.S., Krustanova S., Simova S., Alipieva K., Georgiev M.I.
Publicado en: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22041759

Leucosceptoside A from Devil’s Claw Modulates Psoriasis-like Inflammation via Suppression of the PI3K/AKT Signaling Pathway in Keratinocytes

Autores: Koycheva I.K., Mihaylova L.V., Todorova M.N., Balcheva-Sivenova Z.P., Alipieva K., Ferrante C., Orlando G., Georgiev M.I.
Publicado en: Molecules, 2021, ISSN 1420-3049
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26227014

Plant-Derived Recombinant Vaccines against Zoonotic Viruses

Autores: Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L.
Publicado en: Life, 2022, ISSN 2075-1729
Editor: MDPI
DOI: 10.3390/life12020156

Using precision phenotyping to inform de novo domestication

Autores: Fernie A.R., Alseekh S., Liu J., Yan J.
Publicado en: Plant Phisiology, 2021, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab160

MicroRNA-Mediated Metabolic Reprograming in Renal Cancer

Autores: Bogusławska, Popławski, Alseekh, Koblowska, Iwanicka-Nowicka, Rybicka, Kędzierska, Głuchowska, Hanusek, Tański, Fernie, Piekiełko-Witkowska
Publicado en: Cancers, Edición 11/12, 2019, Página(s) 1825, ISSN 2072-6694
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers11121825

First report of tomato spotted wilt virus on lisianthus (Eustoma grandiflorum) in Bulgaria

Autores: Gancho Pasev, Vesela Radeva-Ivanova, Rafe Lyall, Amol Nankar, Dimitrina Kostova, Massimo Turina, Marta Vallino
Publicado en: Journal of Plant Pathology, Edición 103/1, 2021, Página(s) 375-375, ISSN 1125-4653
Editor: Societa Italiana di Patologia Vegetale
DOI: 10.1007/s42161-020-00702-3

A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts

Autores: Youjun Zhang, Arun Sampathkumar, Sandra Mae-Lin Kerber, Corné Swart, Carsten Hille, Kumar Seerangan, Alexander Graf, Lee Sweetlove, Alisdair R. Fernie
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-18234-w

Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex

Autores: 39. Tohge T., Scossa F., Wendenburg R., Frasse P., Balbo I., Watanabe M., Alseekh S., Jadhav S., Delfin J., Lohse M., Giavalisco P., Usadel B., Zhang Y., Luo J., Bouzayen M., Fernie A.R.
Publicado en: Molecular Plant Volume 13, Edición 7, 2020, Página(s) 1027-1046, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2020.04.004

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Autores: Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R.
Publicado en: Current protocols, 2022, ISSN 2691-1299
Editor: Wiley
DOI: 10.1002/cpz1.371

Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Autores: Kaixuan Zhang, Milen I. Georgiev and Meiliang Zhou1
Publicado en: Genom Biology, 2021, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1186/s13059-020-02217-7

Treasure from garden: Bioactive compounds of buckwheat

Autores: Md. Nurul Huda, Shuai Lu, Tanzim Jahan, Mengqi Ding, Rintu Jha, Kaixuan Zhang, Wei Zhang, Milen I. Georgiev, Sang Un Park, Meiliang Zhou
Publicado en: Food Chemistry, Edición 335, 2021, Página(s) 127653, ISSN 0308-8146
Editor: Elsevier BV
DOI: 10.1016/j.foodchem.2020.127653

Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance

Autores: Jiang L., Yoshida T., Stiegert S., Jing, Y., Alseekh S., Lenhard M., Pérez-Alfocea F., Fernie A.R.
Publicado en: Plant Phisiology, 2021, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa034

Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

Autores: Aakansha Kanojia, Saurabh Gupta, Maria Benina, Alisdair R Fernie, Bernd Mueller-Roeber, Tsanko Gechev, Paul P Dijkwel
Publicado en: Journal of Experimental Botany, Edición 71/20, 2020, Página(s) 6340-6354, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/eraa347

Therapeutic potential of phenylethanoid glycosides: A systematic review

Autores: Lipeng Wu, Milen I. Georgiev, Hui Cao, Lutfun Nahar, Hesham R. El‐Seedi, Satyajit D. Sarker, Jianbo Xiao, Baiyi Lu
Publicado en: Medicinal Research Reviews, Edición 40/6, 2020, Página(s) 2605-2649, ISSN 0198-6325
Editor: John Wiley & Sons Inc.
DOI: 10.1002/med.21717

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis

Autores: Mohamed A. Salem, Leonardo Perez de Souza, Ahmed Serag, Alisdair R. Fernie, Mohamed A. Farag, Shahira M. Ezzat, Saleh Alseekh
Publicado en: Metabolites, Edición 10/1, 2020, Página(s) 37, ISSN 2218-1989
Editor: MDPI
DOI: 10.3390/metabo10010037

Dissection of the domestication‐shaped genetic architecture of lettuce primary metabolism

Autores: Weiyi Zhang, Saleh Alseekh, Xiang Zhu, Qinghua Zhang, Alisdair R. Fernie, Hanhui Kuang, Weiwei Wen
Publicado en: The Plant Journal, Edición 104/3, 2020, Página(s) 613-630, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14950

The Alteration of Tomato Chloroplast Vesiculation Positively Affects Whole-Plant Source–Sink Relations and Fruit Metabolism under Stress Conditions

Autores: Yoav Ahouvi, Zechariah Haber, Yair Yehoshua Zach, Leah Rosental, David Toubiana, Davinder Sharma, Saleh Alseekh, Hiromi Tajima, Alisdair R Fernie, Yariv Brotman, Eduardo Blumwald, Nir Sade
Publicado en: Plant and Cell Physiology, Edición 63, 2023, Página(s) 2008-2026, ISSN 0032-0781
Editor: Oxford University Press
DOI: 10.1093/pcp/pcac133

Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis

Autores: YoujunZhang,Jonas Giese,Sandra M.Kerbler,Beata Siemiatkowska, Leonardo Perez de Souza, Jessica Alper, David Barbosa Medeiro, Dirk K.Hinch, Danilo M.Daloso, Mark Stitt, Iris Finkemeier, Alisdair R.Fernie
Publicado en: Molecular Plant, 2021, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2021.03.023

Green (cell) factories for advanced production of plant secondary metabolites

Autores: Andrey S. Marchev, Zhenya P. Yordanova, Milen I. Georgiev
Publicado en: Critical Reviews in Biotechnology, Edición 40/4, 2020, Página(s) 443-458, ISSN 0738-8551
Editor: Taylor & Francis
DOI: 10.1080/07388551.2020.1731414

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

Autores: Yan Li, Yang Chen, Lu Zhou, Shengjie You, Heng Deng, Ya Chen, Saleh Alseekh, Yong Yuan, Rao Fu, Zixin Zhang, Dan Su, Alisdair R. Fernie, Mondher Bouzayen, Tao Ma, Mingchun Liu, Yang Zhang
Publicado en: Molecular Plant, Edición 13/8, 2020, Página(s) 1203-1218, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2020.06.005

First report of Cucurbit aphid-borne yellows virus causing yellowing disease on pumpkin (Cucurbita pepo) and cucumber (Cucumis sativus) in Bulgaria

Autores: Radeva-Ivanova V., Pasev G., Lyall R., Angelov M., Nankar A.N., Kostova D.
Publicado en: APS Journal, 2022, ISSN 0191-2917
Editor: American Phytopathological Society
DOI: 10.1094/pdis-09-21-2030-pdn

Characterization of effects of genetic variants via genome-scale metabolic modelling.

Autores: Tong, H., Küken, A., Razaghi-Moghadam, Z. Nikoloski
Publicado en: Cellular and Molecular Life Sciences, 2021, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1007/s00018-021-03844-4

The Assembly of Super-Complexes in the Plant Chloroplast

Autores: Qin K., Fernie A.R., Zhang Y.
Publicado en: Biomolecules, 2021, ISSN 2218-273X
Editor: MDPI
DOI: 10.3390/biom11121839

Primary metabolic processes as drivers of leaf ageing.

Autores: Kanojia A., Shrestha K.D., Dijkwel P.
Publicado en: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Editor: Birkhauser Verlag
DOI: 10.1007/s00018-021-03896-6

Evaluation of pepper (Capsicum annuum L.) varieties to several methods of inoculation with Verticillium dahliae Kleb. in different conditions

Autores: Vasileva K., Todorova V.
Publicado en: Bulgarian Journal of Agricultural Sciences 26 (2), 2020, Página(s) 423–430, ISSN 1310-0351
Editor: Agricultural Academy
DOI: 10.5281/zenodo.4707211

Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.

Autores: Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J.
Publicado en: Science China Life Sciences, 2022, ISSN 1674-7305
Editor: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2064-7

MeJA-responsive bHLH transcription factor LjbHLH7 regulates cyanogenic glucoside biosynthesis in Lotus japonicus

Autores: Chen C., Liu F., Zhang K., Niu X., Zhao H., Liu Q., Georgiev M.I., Xu X., Zhang X., Zhou M.
Publicado en: Journal of Experimental Botany, 2022, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erac026

L2,1-norm regularized multivariate regression model with applications to genomic prediction

Autores: Mbebi AJ, Tong H, Nikoloski Z
Publicado en: Bioinformatics, 2021, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btab212

Anti-Adipogenic Effect of Alchemilla monticola is Mediated Via PI3K/AKT Signaling Inhibition in Human Adipocytes

Autores: Mladenova S.G., Vasileva L.V., Savova M.S., Marchev A.S., Tews D., Wabitsch M., Ferrante C., Orlando G., Georgiev M.I.
Publicado en: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Editor: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.707507

PlantaSyst: Teaming up for Systems Biology and Biotechnology

Autores: Tsanko Gechev, Milen I. Georgiev, Alisdair R. Fernie
Publicado en: Trends in Plant Science, Edición 25/7, 2020, Página(s) 621-624, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.010

Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass

Autores: Krahmer J., Abbas A., Mengin V., Ishihara H., Romanowski A., Furniss J.J., Moraes T.A., Krohn N., Annunziata M.G., Feil R., Alseekh S., Obata T., Fernie A.R., Stitt M. and Halliday, K.J.
Publicado en: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erab038

Multi-omics analysis of early leaf development in Arabidopsis thaliana

Autores: Omidbakhshfard M. A., Sokolowska E. M., Di Vittori V., Perez de Souza L., Kuhalskaya A., Brotman Y., Alseekh S., Fernie A.R., Skirycz, A.
Publicado en: Patterns, 2021, ISSN 2666-3899
Editor: Elsevier
DOI: 10.1016/j.patter.2021.100235

Usnic Acid Treatment Changes the Composition of Mycobacterium tuberculosis Cell Envelope and Alters Bacterial Redox Status

Autores: Elwira Sieniawska, Rafal Sawicki, Wieslaw Truszkiewicz, Andrey S. Marchev, Milen I. Georgiev
Publicado en: ASM Journals mSystems Vol. 6, No. 3, 2021, ISSN 0021-9193
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00097-21

Circadian Control of Metabolism by the Clock Component TOC1

Autores: Cervela-Cardona L., Yoshida T., Zhang Y., Okada M., Fernie A.R., Mas P.,
Publicado en: Frotiers in Plant Sciennce, 2021, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.683516

Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity

Autores: Mohamed A. Salem, Riham A. El-Shiekh, Nora M. Aborehab, Ahmed A. Al‐Karmalawy, Shahira M. Ezzat, Saleh Alseekh, Alisdair R. Fernie
Publicado en: Food Chemistry, Edición 398, 2024, Página(s) 133906, ISSN 0308-8146
Editor: Elsevier BV
DOI: 10.1016/j.foodchem.2022.133906

Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit

Autores: Nan Shan, Youjun Zhang, Yicong Guo, Wenna Zhang, Jing Nie, Alisdair R Fernie, Xiaolei Sui
Publicado en: Horticulture Research, Edición 10, 2023, ISSN 2052-7276
Editor: Oxford University Press (OUP)
DOI: 10.1093/hr/uhad216

Assessment of Fruit Quality and Fruit Morphology in Androgenic Pepper Lines (Capsicum annuum L.)

Autores: Grozeva S., Tringovska I., Nankar AN., Todorova V., Kostova D.
Publicado en: Crop Breeding, Genetics and Genomics, Edición Crop Breed Genet Genom. 2020;2(1):e200005., 2020, ISSN 2632-7309
Editor: Hapres
DOI: 10.20900/cbgg20200005

Effect of incubation period and culture medium on pepper anther culture.

Autores: Grozeva S., Nankar AN.
Publicado en: Effect of incubation period and culture medium on pepper anther culture. Indian Journal of Biotechnology. 19 (1), 2020, Página(s) 53-59, ISSN 0975-0967
Editor: Indian Journal of Biotechnology
DOI: 10.5281/zenodo.4711172

Beyond photorespiration: the significance of glycine and serine in leaf metabolism

Autores: João Antonio Siqueira, Youjun Zhang, Adriano Nunes-Nesi, Alisdair R. Fernie, Wagner L. Araújo
Publicado en: Trends in Plant Science, Edición 28, 2023, Página(s) 1092-1094, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2023.06.012

The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition

Autores: Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Jr. Tiozon R.N., Anonuevo J.J., deGuzman M.K., Alseekh S., Mbanjo E.G.N., Boyd L.A., Fernie A.R., Sreenivasulu N.
Publicado en: The Plant Journal, 2021, ISSN 1365-313X
Editor: Wiley
DOI: 10.1111/tpj.15182

Isolation, Structural Properties, and Bioactivities of Polysaccharides from Mushrooms Termitomyces: A Review

Autores: Liu J., Wang Y., Wu J., Georgiev M.I., Xu B., Wong K.H., Bai W., Tian L.
Publicado en: Journal of Agricultural and Food Chemistry, 2022, ISSN 0021-8561
Editor: American Chemical Society
DOI: 10.1021/acs.jafc.1c06443

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Autores: Kroc M., Tomaszewska M., Czepiel K., Bitocchi E., Oppermann M., Neumann K., Guasch L., Bellucci E., Alseekh S., Graner A., Fernie A.R., Papa R., Susek K.
Publicado en: Current Protocols, 2021, ISSN 2691-1299
Editor: Wiley
DOI: 10.1002/cpz1.191

Marker–Trait Association for Protein Content among Maize Wild Accessions and Coix Using SSR Markers

Autores: Shankarappa Varalakshmi, Smrutishree Sahoo, Narendra Kumar Singh, Navneet Pareek, Priya Garkoti, Velmurugan Senthilkumar, Shruti Kashyap, Jai Prakash Jaiswal, Sherry Rachel Jacob, Amol N. Nankar
Publicado en: Agronomy, Edición 13, 2023, Página(s) 2138, ISSN 2073-4395
Editor: MDPI AG
DOI: 10.3390/agronomy13082138

Predicting plasticity of rosette growth and metabolic fluxes in <i>Arabidopsis thaliana</i>

Autores: Hao Tong, Roosa A. E. Laitinen, Zoran Nikoloski
Publicado en: New Phytologist, Edición 240, 2023, Página(s) 426-438, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.19154

Corrigendum to: Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

Autores: Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G.
Publicado en: The Plant cell, 2022, ISSN 1040-4651
Editor: American Society of Plant Biologists
DOI: 10.1093/plcell/koab262

SWATH-MS-Based Proteomics: Strategies and Applications in Plants

Autores: Mo-Xian Chen, Youjun Zhang, Alisdair R. Fernie, Ying-Gao Liu, Fu-Yuan Zhu
Publicado en: Trends in Biotechnology, Edición 39/5, 2021, Página(s) 433-437, ISSN 0167-7799
Editor: Elsevier BV
DOI: 10.1016/j.tibtech.2020.09.002

Domestication of Crop Metabolomes: Desired and Unintended Consequences

Autores: Alseekh S., Scossa F., Wen W., Luo J., Yan J., Beleggia R., Klee H.J., Huang S., Papa R., Fernie A.R.
Publicado en: Trends in Plant Science, 2021, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.005

Rosmarinic acid attenuates obesity and obesity-related inflammation in human adipocytes

Autores: Liliya V.Vasileva, Martina S.Savova, Daniel Tews, Martin Wabitsch, Milen I.Georgiev
Publicado en: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2021.112002

Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits

Autores: Tong H., Nankar A.N., Liu J., Todorova V., Ganeva D., Grozeva S., Tringovska I., Pasev G., Radeva-Ivanova V., Gechev T., Kostova D., Nikoloski Z. (
Publicado en: Horticulture Research, 2022, ISSN 2052-7276
Editor: Oxford Academic
DOI: 10.1093/hr/uhac072

Quantitative trait loci analysis of seed‐specialized metabolites reveals seed‐specific flavonols and differential regulation of glycoalkaloid content in tomato

Autores: Saleh Alseekh, Itai Ofner, Zhongyuan Liu, Sonia Osorio, Jose Vallarino, Robert L. Last, Dani Zamir, Takayuki Tohge, Alisdair R. Fernie
Publicado en: The Plant Journal, Edición 103/6, 2020, Página(s) 2007-2024, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14879

MicroRNA profiling the resurrection plant Haberlea rhodopensis unveils essential regulators of survival under severe drought

Autores: E. APOSTOLOVA, M. GOZMANOVA, L. NACHEVA, Z. IVANOVA, V. TONEVA, I. MINKOV, V. BAEV, G. YAHUBYAN
Publicado en: Biologia plantarum, Edición 64, 2020, Página(s) 541-550, ISSN 0006-3134
Editor: Kluwer Academic Publishers
DOI: 10.32615/bp.2020.062

Anti-adipogenic activity of maackiain and ononin is mediated via inhibition of PPARγ in human adipocytes

Autores: Mladenova S.G., Savova M.S., Marchev A.S., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I.
Publicado en: Biomedicine and Pharmacotherapy, 2022, ISSN 0753-3322
Editor: Elsevier Masson
DOI: 10.1016/j.biopha.2022.112908

The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Autores: Bellucci E., Aguilar O.M., Alseekh S., Bett K., Brezeanu C., Cook D., De la Rosa L., Delledonne M., Dostatny D.F., Ferreira J.J., Geffroy V., Ghitarrini S., Kroc M., Kumar Agrawal S, Logozzo G., Marino M., Mary-Huard T., McClean P., Megli V., Messer T., Muel F., Nanni L., Neumann K., Servalli F., Străjeru S., Varshney R. K., Vasconcelos M. W., Zaccardelli M., Zavarzin A., Bitocchi E., Frontoni E.
Publicado en: The Plant Journal, 2021, ISSN 1365-313X
Editor: Wiley
DOI: 10.1111/tpj.15472

Betulinic acid counteracts the lipid accumulation in Caenorhabditis elegans by modulation of nhr-49 expression

Autores: Martina S. Savova, Monika N. Todorova, Apostol G. Apostolov, Galina T. Yahubyan, Milen I. Georgiev
Publicado en: Biomedicine & Pharmacotherapy, Edición 156, 2023, Página(s) 113862, ISSN 0753-3322
Editor: Elsevier Masson
DOI: 10.1016/j.biopha.2022.113862

Investigating the dynamics of protein–protein interactions in plants

Autores: Youjun Zhang, Moxian Chen, Tieyuan Liu, Kezhen Qin, Alisdair R. Fernie
Publicado en: The Plant Journal, Edición 114, 2023, Página(s) 965-983, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16182

The diversity of quinoa morphological traits and seed metabolic composition

Autores: Iman Tabatabaei, Saleh Alseekh, Mohammad Shahid, Ewa Leniak, Mateusz Wagner, Henda Mahmoudi, Sumitha Thushar, Alisdair R. Fernie, Kevin M. Murphy, Sandra M. Schmöckel, Mark Tester, Bernd Mueller-Roeber, Aleksandra Skirycz, Salma Balazadeh
Publicado en: Scientific Data, Edición 9, 2022, ISSN 2052-4463
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41597-022-01399-y

Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis

Autores: Feng Zhu, Saleh Alseekh, Kaan Koper, Hao Tong, Zoran Nikoloski, Thomas Naake, Haijun Liu, Jianbing Yan, Yariv Brotman, Weiwei Wen, Hiroshi Maeda, Yunjiang Cheng, and Alisdair R Fernie
Publicado en: The Plant Cell, 2022, ISSN 3462-3442
Editor: Oxford University Press
DOI: 10.1093/plcell/koab251

Formulation and Testing of Antioxidant and Protective Effect of Hyalurosomes Loading Extract Rich in Rosmarinic Acid Biotechnologically Produced from Lavandula angustifolia Miller

Autores: Perra M., Fancello L., Castangia I., Allaw M., Escribano-Ferrer E., Peris J.E., Usach I., Manca M.L., Koycheva I.K., Georgiev M.I., Manconi M.
Publicado en: Molecules, 2022, ISSN 1420-3049
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules27082423

The conditional mitochondrial protein complexome in the Arabidopsis thaliana root and shoot

Autores: Youjun Zhang, Silvia Martínez Jaime, Mustafa Bulut, Alexander Graf, Alisdair R. Fernie
Publicado en: Plant Communications, Edición 4, 2023, Página(s) 100635, ISSN 2590-3462
Editor: Elsevier BV
DOI: 10.1016/j.xplc.2023.100635

Leveraging glycoside-targeted metabolomics to gain insight into biological function

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Trends in Plant Science, Edición 28, 2023, Página(s) 737-739, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2023.04.004

Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation-tolerant plant

Autores: Meriem Durgud, Saurabh Gupta, Ivan Ivanov, Amin Omidbakhshfard, Maria Benina, Saleh Alseekh, Nikola Staykov, Mareike Hauenstein, Paul Dijkwel, Stefan Hörtensteiner, Valentina Toneva, Yariv Brotman, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko Gechev
Publicado en: Plant Physiology, 2018, Página(s) pp.00055.2018, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.18.00055

Jasmonate-responsive MYB factors spatially repress rutin biosynthesis in Fagopyrum tataricum

Autores: Kaixuan Zhang, Maria D Logacheva, Yu Meng, Jianping Hu, Dongpu Wan, Long Li, Dagmar Janovská, Zhiyong Wang, Milen I Georgiev, Zhuo Yu, Fuyu Yang, Mingli Yan, Meiliang Zhou
Publicado en: Journal of Experimental Botany, Edición 69/8, 2018, Página(s) 1955-1966, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/ery032

Targeting ncRNAs by plant secondary metabolites: The ncRNAs game in the balance towards malignancy inhibition

Autores: Diana Gulei, Nikolay Mehterov, Seyed Mohammad Nabavi, Atanas Georgiev Atanasov, Ioana Berindan-Neagoe
Publicado en: Biotechnology Advances, 2017, ISSN 0734-9750
Editor: Elsevier BV
DOI: 10.1016/j.biotechadv.2017.11.003

Metabolomics 20 years on: what have we learned and what hurdles remain?

Autores: Saleh Alseekh, Alisdair R. Fernie
Publicado en: The Plant Journal, Edición 94/6, 2018, Página(s) 933-942, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.13950

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants

Autores: Federico Scossa, Maria Benina, Saleh Alseekh, Youjun Zhang, Alisdair Fernie
Publicado en: Planta Medica, 2018, ISSN 0032-0943
Editor: Georg Thieme Verlag
DOI: 10.1055/a-0630-1899

Quantitative trait loci analysis identifies a prominent gene involved in the production of fatty-acid-derived flavor volatiles in tomato

Autores: Karolina Garbowicz, Zhongyuan Liu, Saleh Alseekh, Denise Tieman, Mark Taylor, Anastasiya Kuhalskaya, Itai Ofner, Dani Zamir, Harry J. Klee, Alisdair R. Fernie, Yariv Brotman
Publicado en: Molecular Plant, 2018, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2018.06.003

The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato

Autores: Xuemin Ma, Youjun Zhang, Veronika Turečková, Gang-Ping Xue, Alisdair R. Fernie, Bernd Mueller-Roeber, Salma Balazadeh
Publicado en: Plant Physiology, Edición 177/3, 2018, Página(s) 1286-1302, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.18.00292

Defining the convergence of ethylene and auxin signaling in tomato

Autores: Alisdair R. Fernie, Saleh Alseekh
Publicado en: New Phytologist, Edición 219/2, 2018, Página(s) 479-481, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.15251

Modifications of dietary flavonoids towards improved bioactivity: An update on structure–activity relationship

Autores: Lei Chen, Hui Teng, Zhenglu Xie, Hui Cao, Wai San Cheang, Krystyna Skalicka-Woniak, Milen I. Georgiev, Jianbo Xiao
Publicado en: Critical Reviews in Food Science and Nutrition, Edición 58/4, 2017, Página(s) 513-527, ISSN 1040-8398
Editor: Taylor & Francis
DOI: 10.1080/10408398.2016.1196334

Rewiring of the Fruit Metabolome in Tomato Breeding

Autores: Guangtao Zhu, Shouchuang Wang, Zejun Huang, Shuaibin Zhang, Qinggang Liao, Chunzhi Zhang, Tao Lin, Mao Qin, Meng Peng, Chenkun Yang, Xue Cao, Xu Han, Xiaoxuan Wang, Esther van der Knaap, Zhonghua Zhang, Xia Cui, Harry Klee, Alisdair R. Fernie, Jie Luo, Sanwen Huang
Publicado en: Cell, Edición 172/1-2, 2018, Página(s) 249-261.e12, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2017.12.019

Occurrence, biochemistry and biological effects of host-selective plant mycotoxins

Autores: Veselin Petrov, Muhammad Kamran Qureshi, Jacques Hille, Tsanko Gechev
Publicado en: Food and Chemical Toxicology, Edición 112, 2018, Página(s) 251-264, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2017.12.047

Nutrigenomics in cancer: Revisiting the effects of natural compounds

Autores: Cornelia Braicu, Nikolay Mehterov, Boyan Vladimirov, Victoria Sarafian, Seyed Mohammad Nabavi, Atanas G. Atanasov, Ioana Berindan-Neagoe
Publicado en: Seminars in Cancer Biology, Edición 46, 2017, Página(s) 84-106, ISSN 1044-579X
Editor: Academic Press
DOI: 10.1016/j.semcancer.2017.06.011

Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

Autores: Kevin Schwahn, Romina Beleggia, Nooshin Omranian, Zoran Nikoloski
Publicado en: Frontiers in Plant Science, Edición 8, 2017, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.02152

Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation

Autores: Saurabh Gupta, Yanni Dong, Paul P. Dijkwel, Bernd Mueller-Roeber, Tsanko S. Gechev
Publicado en: International Journal of Molecular Sciences, Edición 20/12, 2019, Página(s) 3101, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms20123101

On the role of the tricarboxylic acid cycle in plant productivity

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Journal of Integrative Plant Biology, Edición 60/12, 2018, Página(s) 1199-1216, ISSN 1672-9072
Editor: Blackwell Publishing Inc.
DOI: 10.1111/jipb.12690

Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation

Autores: Yi Zhang, Youjun Zhang, Heather E. McFarlane, Toshihiro Obata, Andreas S. Richter, Mark Lohse, Bernhard Grimm, Staffan Persson, Alisdair R. Fernie, Patrick Giavalisco
Publicado en: Plant Physiology, Edición 178/1, 2018, Página(s) 101-117, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.18.00684

First report of Peanut stunt virus on beans in Bulgaria

Autores: G. Pasev, V. Radeva-Ivanova, Y. Manoussopoulos, M. Turina, D. Kostova
Publicado en: New Disease Reports, Edición 38, 2018, Página(s) 9, ISSN 2044-0588
Editor: The British Society for Plant Pathology
DOI: 10.5197/j.2044-0588.2018.038.009

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Autores: Adriano Nunes-Nesi, Saleh Alseekh, Franklin Magnum de Oliveira Silva, Nooshin Omranian, Gabriel Lichtenstein, Mohammad Mirnezhad, Roman R. Romero González, Julia Sabio y Garcia, Mariana Conte, Kirsten A. Leiss, Peter G. L. Klinkhamer, Zoran Nikoloski, Fernando Carrari, Alisdair R. Fernie
Publicado en: Metabolomics, Edición 15/4, 2019, ISSN 1573-3882
Editor: Springer Verlag
DOI: 10.1007/s11306-019-1503-8

Antidepressant-like effect of salidroside and curcumin on the immunoreactivity of rats subjected to a chronic mild stress model

Autores: Liliya V. Vasileva, Kremena E. Saracheva, Mariya V. Ivanovska, Atanaska P. Petrova, Andrey S. Marchev, Milen I. Georgiev, Mariana A. Murdjeva, Damiyanka P. Getova
Publicado en: Food and Chemical Toxicology, Edición 121, 2018, Página(s) 604-611, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2018.09.065

Causes and solutions to “globesity”: The new fa(s)t alarming global epidemic

Autores: Liliya V. Vasileva, Andrey S. Marchev, Milen I. Georgiev
Publicado en: Food and Chemical Toxicology, Edición 121, 2018, Página(s) 173-193, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2018.08.071

Data Reduction Approaches for Dissecting Transcriptional Effects on Metabolism

Autores: Kevin Schwahn, Zoran Nikoloski
Publicado en: Frontiers in Plant Science, Edición 9, 2018, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.00538

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas

Autores: Fantao Kong, Adrien Burlacot, Yuanxue Liang, Bertrand Légeret, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie, Anja Krieger-Liszkay, Fred Beisson, Gilles Peltier, Yonghua Li-Beisson
Publicado en: The Plant Cell, Edición 30/8, 2018, Página(s) 1824-1847, ISSN 1040-4651
Editor: American Society of Plant Biologists
DOI: 10.1105/tpc.18.00361

Passing the Baton: Substrate Channelling in Respiratory Metabolism

Autores: Alisdair R. Fernie, Youjun Zhang, Lee J. Sweetlove
Publicado en: Research, Edición 2018, 2018, Página(s) 1-16, ISSN 2639-5274
Editor: American Association for the Advancement of Science
DOI: 10.1155/2018/1539325

In vivo detection of protein cysteine sulfenylation in plastids

Autores: Barbara De Smet, Patrick Willems, Alvaro D. Fernandez‐Fernandez, Saleh Alseekh, Alisdair R. Fernie, Joris Messens, Frank Van Breusegem
Publicado en: The Plant Journal, Edición 97/4, 2019, Página(s) 765-778, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14146

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population

Autores: Yaacov Micha Brog, Sonia Osorio, Yoav Yichie, Saleh Alseekh, Elad Bensal, Andriy Kochevenko, Dani Zamir, Alisdair R. Fernie
Publicado en: The Plant Journal, Edición 97/2, 2019, Página(s) 391-403, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14095

Clinopodium vulgare L. (wild basil) extract and its active constituents modulate cyclooxygenase-2 expression in neutrophils

Autores: Kristiana M. Amirova, Petya Dimitrova, Andrey S. Marchev, Ina Y. Aneva, Milen I. Georgiev
Publicado en: Food and Chemical Toxicology, Edición 124, 2019, Página(s) 1-9, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2018.11.054

Crop metabolomics: from diagnostics to assisted breeding

Autores: Saleh Alseekh, Luisa Bermudez, Luis Alejandro de Haro, Alisdair R. Fernie, Fernando Carrari
Publicado en: Metabolomics, Edición 14/11, 2018, ISSN 1573-3882
Editor: Springer Verlag
DOI: 10.1007/s11306-018-1446-5

Phytochemical composition and antioxidant activity of 63 Balkan pepper (Capsicum annuum L.) accessions

Autores: Petko Denev, Velichka Todorova, Manol Ognyanov, Yordan Georgiev, Irina Yanakieva, Ivanka Tringovska, Stanislava Grozeva, Dimitrina Kostova
Publicado en: Journal of Food Measurement and Characterization, 2019, ISSN 2193-4126
Editor: Springer Science + Business Media
DOI: 10.1007/s11694-019-00171-y

Immunoregulatory natural compounds in stress-induced depression: An alternative or an adjunct to conventional antidepressant therapy?

Autores: Liliya V. Vasileva, Mariya V. Ivanovska, Marianna A. Murdjeva, Kremena E. Saracheva, Milen I. Georgiev
Publicado en: Food and Chemical Toxicology, Edición 127, 2019, Página(s) 81-88, ISSN 0278-6915
Editor: Elsevier BV
DOI: 10.1016/j.fct.2019.03.004

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Autores: Alexey Shapiguzov, Julia P Vainonen, Kerri Hunter, Helena Tossavainen, Arjun Tiwari, Sari Järvi, Maarit Hellman, Fayezeh Aarabi, Saleh Alseekh, Brecht Wybouw, Katrien Van Der Kelen, Lauri Nikkanen, Julia Krasensky-Wrzaczek, Nina Sipari, Markku Keinänen, Esa Tyystjärvi, Eevi Rintamäki, Bert De Rybel, Jarkko Salojärvi, Frank Van Breusegem, Alisdair R Fernie, Mikael Brosché, Perttu Permi, Eva-M
Publicado en: eLife, Edición 8, 2019, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.43284

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Autores: Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev
Publicado en: Cellular and Molecular Life Sciences, 2019, ISSN 1420-682X
Editor: Birkhauser Verlag
DOI: 10.1007/s00018-019-03202-5

COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors

Autores: Gita Naseri, Jessica Behrend, Lisa Rieper, Bernd Mueller-Roeber
Publicado en: Nature Communications, Edición 10/1, 2019, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-019-10224-x

Application of high-throughput phenotyping tool Tomato Analyzer to characterize Balkan Capsicum fruit diversity

Autores: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Velichka Todorova, Dimitrina Kostova
Publicado en: Scientia Horticulturae, Edición 260, 2020, Página(s) 108862, ISSN 0304-4238
Editor: Elsevier BV
DOI: 10.1016/j.scienta.2019.108862

Large‐scale metabolite quantitative trait locus analysis provides new insights for high‐quality maize improvement

Autores: Kun Li, Weiwei Wen, Saleh Alseekh, Xiaohong Yang, Huan Guo, Wenqiang Li, Luxi Wang, Qingchun Pan, Wei Zhan, Jie Liu, Yanhua Li, Xiao Wu, Yariv Brotman, Lothar Willmitzer, Jiansheng Li, Alisdair R. Fernie, Jianbing Yan
Publicado en: The Plant Journal, 2019, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14317

Extensive Variations in Diurnal Growth Patterns and Metabolism Among Ulva spp. Strains

Autores: Antoine Fort, Morgane Lebrault, Margot Allaire, Alberto A. Esteves-Ferreira, Marcus McHale, Francesca Lopez, Jose M. Fariñas-Franco, Saleh Alseekh, Alisdair R. Fernie, Ronan Sulpice
Publicado en: Plant Physiology, Edición 180/1, 2019, Página(s) 109-123, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.18.01513

Exploring the Diversity of Plant Metabolism

Autores: Chuanying Fang, Alisdair R. Fernie, Jie Luo
Publicado en: Trends in Plant Science, Edición 24/1, 2019, Página(s) 83-98, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2018.09.006

MYB Transcription Repressors Regulate Plant Secondary Metabolism

Autores: Cheng Chen, Kaixuan Zhang, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Xinquan Zhang, Meiliang Zhou
Publicado en: Critical Reviews in Plant Sciences, Edición 38/3, 2019, Página(s) 159-170, ISSN 0735-2689
Editor: Taylor & Francis
DOI: 10.1080/07352689.2019.1632542

Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize

Autores: Masaharu Suzuki, Shan Wu, Manaki Mimura, Saleh Alseekh, Alisdair R. Fernie, Andrew D. Hanson, Donald R. McCarty
Publicado en: The Plant Journal, 2019, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14535

The Structure and Function of Major Plant Metabolite Modifications

Autores: Shouchuang Wang, Saleh Alseekh, Alisdair R. Fernie, Jie Luo
Publicado en: Molecular Plant, Edición 12/7, 2019, Página(s) 899-919, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2019.06.001

Comparative metabolite profiling of two switchgrass ecotypes reveals differences in drought stress responses and rhizosheath weight

Autores: Tie-Yuan Liu, Mo-Xian Chen, Youjun Zhang, Fu-Yuan Zhu, Ying-Gao Liu, Yuan Tian, Alisdair R. Fernie, Nenghui Ye, Jianhua Zhang
Publicado en: Planta, Edición 250/4, 2019, Página(s) 1355-1369, ISSN 0032-0935
Editor: Springer Verlag
DOI: 10.1007/s00425-019-03228-w

Redox-Regulation of Photorespiration through Mitochondrial Thioredoxin o1

Autores: Ole Reinholdt, Saskia Schwab, Youjun Zhang, Jean-Philippe Reichheld, Alisdair R. Fernie, Martin Hagemann, Stefan Timm
Publicado en: Plant Physiology, Edición 181/2, 2019, Página(s) 442-457, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.19.00559

Transposon-associated polymorphisms of stress-responsive gene promoters in natural variants of Arabidopsis thaliana

Autores: Mladen Naydenov, Nadezhda Gospodinova, Elena Apostolova, Nikolaj Anachkov, Vesselin Baev, Mariyana Gozmanova, Ivan Minkov, Galina Yahubyan
Publicado en: Acta Biochimica Polonica, Edición 65/3, 2018, ISSN 0001-527X
Editor: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2017_1590

LoopRNA – Java Module for RNA Structure Annotation

Autores: Georgi Minkov, Valentina Toneva, Zdravka Ivanova, Vesselin Baev
Publicado en: Comptes rendus de l’Acade'mie bulgare des Sciences, Edición Vol 71, No9, 2018, Página(s) 1215-1221, ISSN 1310-1331
Editor: "BAS publishing ""Prof.Malin Darinov"""
DOI: 10.7546/crabs.2018.09.08

A new liquid chromatography-high resolution Orbitrap mass spectrometry-based strategy to characterize Glucuronide Oleanane-type Triterpenoid Carboxylic Acid 3, 28-O-Bidesmosides (GOTCAB) saponins.A case study of Gypsophila glomerata Pall ex M. B. (Caryophyllaceae)

Autores: Reneta Gevrenova, Krum Bardarov, Sabine Bouguet-Bonnet, Yulian Voynikov, Vessela Balabanova, Dimitrina Zheleva-Dimitrova, Max Henry
Publicado en: Journal of Pharmaceutical and Biomedical Analysis, Edición 159, 2018, Página(s) 567-581, ISSN 0731-7085
Editor: Elsevier BV
DOI: 10.1016/j.jpba.2018.07.041

Evaluation of collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb.

Autores: Katya Vasileva, Velichka Todorova, Stojka Masheva
Publicado en: Bulgarian Journal of Agricultural Science, Edición 25 (No 5) 2019, 2019, Página(s) 1030-1038, ISSN 2534-983X
Editor: Agricultural Academy of Bulgaria

Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment

Autores: Yanni Dong, Saurabh Gupta, Rixta Sievers, Jason J. Wargent, David Wheeler, Joanna Putterill, Richard Macknight, Tsanko Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Publicado en: BMC Genomics, Edición 20/1, 2019, ISSN 1471-2164
Editor: BioMed Central
DOI: 10.1186/s12864-019-6084-4

Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation

Autores: Mo-Xian Chen, Fu-Yuan Zhu, Bei Gao, Kai-Long Ma, Youjun Zhang, Alisdair R. Fernie, Xi Chen, Lei Dai, Neng-Hui Ye, Xue Zhang, Yuan Tian, Di Zhang, Shi Xiao, Jianhua Zhang, Ying-Gao Liu
Publicado en: Plant Physiology, 2019, Página(s) pp.00430.2019, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1104/pp.19.00430

Rapid High-Yield Transient Expression of Swine Hepatitis E ORF2 Capsid Proteins in Nicotiana benthamiana Plants and Production of Chimeric Hepatitis E Virus-Like Particles Bearing the M2e Influenza Epitope

Autores: Gergana G. Zahmanova, Milena Mazalovska, Katerina H. Takova, Valentina T. Toneva, Ivan N. Minkov, Eugenia S. Mardanova, Nikolai V. Ravin, George P. Lomonossoff
Publicado en: Plants, Edición 9/1, 2020, Página(s) 29, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants9010029

Untargetted Metabolomic Exploration of the Mycobacterium tuberculosis Stress Response to Cinnamon Essential Oil

Autores: Elwira Sieniawska, Rafał Sawicki, Joanna Golus, Milen I. Georgiev
Publicado en: Biomolecules, Edición 10/3, 2020, Página(s) 357, ISSN 2218-273X
Editor: MDPI
DOI: 10.3390/biom10030357

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

Autores: Mohammad Amin Omidbakhshfard, Neerakkal Sujeeth, Saurabh Gupta, Nooshin Omranian, Kieran J. Guinan, Yariv Brotman, Zoran Nikoloski, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko S. Gechev
Publicado en: International Journal of Molecular Sciences, Edición 21/2, 2020, Página(s) 474, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21020474

Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping

Autores: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Daniela Ganeva, Dimitrina Kostova
Publicado en: Plants, Edición 9/2, 2020, Página(s) 197, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants9020197

Molecular priming as an approach to induce tolerance against abiotic and oxidative stresses in crop plants

Autores: Pavel Kerchev, Tom van der Meer, Neerakkal Sujeeth, Arno Verlee, Christian V. Stevens, Frank Van Breusegem, Tsanko Gechev
Publicado en: Biotechnology Advances, 2019, Página(s) 107503, ISSN 0734-9750
Editor: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107503

PC2P: parameter-free network-based prediction of protein complexes

Autores: Sara Omranian, Angela Angeleska, Zoran Nikoloski
Publicado en: Bioinformatics, 2021, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btaa1089

Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

Autores: Hao Tonga, Zoran Nikoloski
Publicado en: Journal of Plant Physiology, 2021, ISSN 0176-1617
Editor: Elsevier BV
DOI: 10.1016/j.jplph.2020.153354

The style and substance of plant flavonoid decoration; towards defining both structure and function

Autores: Saleh Alseekh, Leonardo Perez de Souza, Maria Benina, Alisdair R. Fernie
Publicado en: Phytochemistry, Edición 174, 2020, Página(s) 112347, ISSN 0031-9422
Editor: Elsevier BV
DOI: 10.1016/j.phytochem.2020.112347

Resolving the metabolon: is the proof in the metabolite?

Autores: Youjun Zhang, Alisdair R Fernie
Publicado en: EMBO reports, Edición 21/8, 2020, ISSN 1469-221X
Editor: Nature Publishing Group
DOI: 10.15252/embr.202050774

Double Haploid Development and Assessment of Androgenic Competence of Balkan Pepper Core Collection in Bulgaria

Autores: Grozeva S., Pasev G., Radeva-Ivanova V., Todorova V., Ivanova V., Nankar A.N.
Publicado en: Plants, 2021, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants10112414

Rosmarinic acid - From bench to valuable applications in food industry

Autores: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Koycheva I.K., Balcheva-Sivenova Z.P., Vasileva S.M., Georgiev M.I.
Publicado en: Trends in Food Science & Technology, 2021, ISSN 0924-2244
Editor: Elsevier BV
DOI: 10.1016/j.tifs.2021.03.015

Plant Systems Biology in 2022 and Beyond

Autores: Gechev T., Petrov V.
Publicado en: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23084159

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

Autores: Weiyi Zhang, Youjun Zhang, Haiji Qiu, Yafei Guo, Haoliang Wan, Xiaoliang Zhang, Federico Scossa, Saleh Alseekh, Qinghua Zhang, Pu Wang, Li Xu, Maximilian H-W Schmidt, Xinxin Jia, Daili Li, Anting Zhu, Fei Guo, Wei Chen, Dejiang Ni, Björn Usadel, Alisdair R. Fernie, Weiwei Wen
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-17498-6

The Bacillus subtilis glutamate anti-metabolon

Autores: Fernie A.R., Zhang Y.
Publicado en: Nature Metabolism, 2022, ISSN 2522-5812
Editor: Springer Nature
DOI: 10.1038/s42255-022-00534-8

Auxin boosts energy generation pathways to fuel pollen maturation in barley

Autores: Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura ., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F.
Publicado en: Current Biology, 2022, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2022.02.073

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains

Autores: Amol N. Nankar, M Paul Scott, Richard C. Pratt
Publicado en: Plants, Edición 9/12, 2020, Página(s) 1775, ISSN 2223-7747
Editor: MDPI
DOI: 10.3390/plants9121775

The Plant Viruses and Molecular Farming: How Beneficial They Might Be for Human and Animal Health?

Autores: Gergana Zahmanova, Alaa A. Aljabali, Katerina Takova, Valentina Toneva, Murtaza M. Tambuwala, Anton P. Andonov, Georgi L. Lukov, Ivan Minkov
Publicado en: International Journal of Molecular Sciences, Edición 24, 2025, Página(s) 1533, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24021533

Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.

Autores: Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R.
Publicado en: Plant Cell Reports, 2022, ISSN 0721-7714
Editor: Springer Verlag
DOI: 10.1007/s00299-022-02831-8

Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes

Autores: Nasser Sewelam, Dominik Brilhaus, Andrea Bräutigam, Saleh Alseekh, Alisdair R Fernie, Veronica G Maurino
Publicado en: Journal of Experimental Botany, Edición 71/16, 2020, Página(s) 5098-5112, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/eraa250

Dynamically regulating metabolic fluxes with synthetic metabolons

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Trends in Biotechnology, Edición 40, 2024, Página(s) 1019-1020, ISSN 0167-7799
Editor: Elsevier BV
DOI: 10.1016/j.tibtech.2022.06.005

Editorial: Enhancing allele mining for crop improvement amid the emerging challenge of climate change

Autores: Pasquale Tripodi, Narendra Kumar Singh, Michael Abberton, Amol N. Nankar
Publicado en: Frontiers in Plant Science, Edición 14, 2023, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1197086

The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants

Autores: Chen Jiao, Iben Sørensen, Xuepeng Sun, Honghe Sun, Hila Behar, Saleh Alseekh, Glenn Philippe, Kattia Palacio Lopez, Li Sun, Reagan Reed, Susan Jeon, Reiko Kiyonami, Sheng Zhang, Alisdair R. Fernie, Harry Brumer, David S. Domozych, Zhangjun Fei, Jocelyn K.C. Rose
Publicado en: Cell, Edición 181/5, 2020, Página(s) 1097-1111.e12, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2020.04.019

Ziziphus jujuba Mill. leaf extract restrains adipogenesis by targeting PI3K/AKT signaling pathway

Autores: Martina S.Savova, Liliya V.Vasileva, Saveta G.Mladenova, Kristiana M.Amirova, Claudio Ferrante, Giustino Orlando, Martin Wabitsche, Milen I.Georgiev
Publicado en: Biomedicine & Pharmacotherapy, 2021, ISSN 0753-3322
Editor: Elsevier Masson
DOI: 10.1016/j.biopha.2021.111934

Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis

Autores: Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber, B, Meskiene I., Schweighofer A.
Publicado en: Journal of Experimental Botany, 2022, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/erac018

Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach

Autores: Ahmed Zayed, Mohamed A. Farag, Alexander Mehring, Mohamed A. Salem, Rana M. Ibrahim, Saleh Alseekh, Alisdair R. Fernie, Roland Ulber
Publicado en: Phytochemistry, Edición 213, 2023, Página(s) 113777, ISSN 0031-9422
Editor: Elsevier BV
DOI: 10.1016/j.phytochem.2023.113777

Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein

Autores: Duarte G. T., Pandey P. K., Vaid N., Alseekh S., Fernie A.R., Nikoloski Z., Laitinen. R.
Publicado en: Plant cell and environment, 2021, ISSN 1365-3040
Editor: Wiley
DOI: 10.1111/pce.14146

Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant

Autores: Alexey Shapiguzov, Lauri Nikkanen, Duncan Fitzpatrick, Julia P. Vainonen, Richard Gossens, Saleh Alseekh, Fayezeh Aarabi, Arjun Tiwari, Olga Blokhina, Klára Panzarová, Zuzana Benedikty, Esa Tyystjärvi, Alisdair R. Fernie, Martin Trtílek, Eva-Mari Aro, Eevi Rintamäki, Jaakko Kangasjärvi
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, Edición 375/1801, 2020, Página(s) 20190413, ISSN 0962-8436
Editor: Royal Society of London
DOI: 10.1098/rstb.2019.0413

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Autores: Alexander A. Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L. F. Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N. Maloney, Biswapriya B. Misra, Alexey V. Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L. Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J. J. van der Hooft, Mabel Gonzalez, Chiara Carazzone,
Publicado en: Nature Biotechnology, Edición 39/2, 2021, Página(s) 169-173, ISSN 1087-0156
Editor: Nature Publishing Group
DOI: 10.1038/s41587-020-0700-3

When a Crop Goes Back to the Wild: Feralization

Autores: Federico Scossa, Alisdair R. Fernie
Publicado en: Trends in Plant Science, 2021, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.002

Efficient Production of Chimeric Hepatitis B Virus-Like Particles Bearing an Epitope of Hepatitis E Virus Capsid by Transient Expression in Nicotiana benthamiana

Autores: Gergana Zahmanova, Milena Mazalovska, Katerina Takova, Valentina Toneva, Ivan Minkov, Hadrien Peyret and George Lomonossoff
Publicado en: Life, 2021, ISSN 2075-1729
Editor: MDPI
DOI: 10.3390/life11010064

Natural Genetic Diversity in Tomato Flavor Genes

Autores: Pereira L., Sapkota M., Alonge M., Zheng Y., Zhang Y., Razifard H., Taitano N.K., Schatz M., Lipman Z., Fernie A.R., Wang Y, Fei Z, Caicedo A.L., Tieman D.M., Knaap E.
Publicado en: Frontiers in Plant Science, 2021, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.642828

Evaluation a collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb

Autores: 77. Vasileva K, Todorova V, Masheva S.
Publicado en: Bulgarian Journal of Agricultural Science 25(3), 2019, Página(s) 415-420, ISSN 1310-0351
Editor: Agricultural Academy
DOI: 10.5281/zenodo.3692692

Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa.

Autores: Gutsch A., Hendrix S., Guerriero G., Renaut J., Lutts S., Alseekh S., Fernie A.R., Hausman J.F., Vangronsveld J., Cuypers A., Sergeant K.
Publicado en: Cells, 2021, ISSN 2073-4409
Editor: MDPI
DOI: 10.3390/cells9122707

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Autores: Cortinovis G., Oppermann M., Neumann K., Graner A., Gioia T., Marsella M., Alseekh S., Fernie A.R., Papa R., Bellucci E., Bitocchi E.
Publicado en: Current protocols., 2021, ISSN 2691-1299
Editor: Wiley
DOI: 10.1002/cpz1.133

Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability

Autores: Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M.
Publicado en: Plant Physiology, 2022, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac162

Metabolite profiling of Arabidopsis mutants of lower glycolysis

Autores: Youjun Zhang, Alisdair R. Fernie
Publicado en: Scientific Data, Edición 9, 2022, ISSN 2052-4463
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41597-022-01673-z

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Autores: Alseekh S., Aharoni A., Brotman Y., Contrepois K., D’Auria ., Ewald C. ., Ewald ., Fraser P.D., Giavalisco P., Hall R.D., Heinemann M., Link H., Luo J., Neumann S., Nielsen J., Leonardo Souza P., Saito K., Sauer U., Schroeder C.F., Schuster S., Siuzdak, G., Skirycz A., Sumner W.L., Snyder P.M., Tang H., Tohge T., Wang Y., Wen W., Wu S., Xu G., Nicola Zamboni N., R. Fernie A.R.
Publicado en: Nature Methods, 2021, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-021-01197-1

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits

Autores: Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, Dimitrina Kostova
Publicado en: PLOS ONE, Edición 15/8, 2020, Página(s) e0237741, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0237741

Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

Autores: Aarabi F., Rakpenthai A., Barahimipour R., Gorka M., Alseekh S., Zhang Y., Salem M. A., Brückner F., Omranian N., Watanabe M., Nikoloski Z., Giavalisco P., Tohge T., Graf A., Fernie A.R., Hoefgen R.
Publicado en: Plant Physiology, 2021, ISSN 0032-0889
Editor: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab386

A non‐canonical function of Arabidopsis <scp>ERECTA</scp> proteins and a role of the <scp>SWI3B</scp> subunit of the <scp>SWI</scp>/<scp>SNF</scp> chromatin remodeling complex in gibberellin signaling

Autores: Elzbieta Sarnowska, Szymon Kubala, Pawel Cwiek, Sebastian Sacharowski, Paulina Oksinska, Jaroslaw Steciuk, Magdalena Zaborowska, Jakub M. Szurmak, Roman Dubianski, Anna Maassen, Malgorzata Stachowiak, Bruno Huettel, Monika Ciesla, Klaudia Nowicka, Anna T. Rolicka, Saleh Alseekh, Ernest Bucior, Rainer Franzen, Anna Skoneczna, Malgorzata A. Domagalska, Samija Amar, Mohammad‐Reza Hajirezaei, Janusz
Publicado en: The Plant Journal, Edición 115, 2023, Página(s) 788-802, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16261

Targeting PI3K/AKT signaling pathway in obesity

Autores: Martina S. Savova, Liliya V. Mihaylova, Daniel Tews, Martin Wabitsch, Milen I. Georgiev
Publicado en: Biomedicine & Pharmacotherapy, Edición 159, 2024, Página(s) 114244, ISSN 0753-3322
Editor: Elsevier Masson
DOI: 10.1016/j.biopha.2023.114244

Comparative and population genomics of buckwheat species reveal key determinants of flavor and fertility

Autores: Kaixuan Zhang, Yuqi He, Xiang Lu, Yaliang Shi, Hui Zhao, Xiaobo Li, Jinlong Li, Yang Liu, Yinan Ouyang, Yu Tang, Xue Ren, Xuemei Zhang, Weifei Yang, Zhaoxia Sun, Chunhua Zhang, Muriel Quinet, Zlata Luthar, Mateja Germ, Ivan Kreft, Dagmar Janovská, Vladimir Meglič, Barbara Pipan, Milen I. Georgiev, Bruno Studer, Mark A. Chapman, Meiliang Zhou
Publicado en: Molecular Plant, Edición 16, 2023, Página(s) 1427-1444, ISSN 1674-2052
Editor: Oxford University Press
DOI: 10.1016/j.molp.2023.08.013

Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways

Autores: Feng Zhu, Weiwei Wen, Yunjiang Cheng, Saleh Alseekh, Alisdair R. Fernie
Publicado en: aBIOTECH, Edición 4, 2023, Página(s) 47-56, ISSN 2662-1738
Editor: Springer Science and Business Media LLC
DOI: 10.1007/s42994-022-00091-4

Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues

Autores: Alisdair R. Fernie, Youjun Zhang, Arun Sampathkumar
Publicado en: Trends in Biochemical Sciences, Edición 45/8, 2020, Página(s) 637-638, ISSN 0968-0004
Editor: Elsevier BV
DOI: 10.1016/j.tibs.2020.04.003

Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein

Autores: Jung J-W., Zahmanova G., Minkov I., Lomonossoff G.P.
Publicado en: Plant Biotechnolgy Journal, 2022, ISSN 1467-7644
Editor: Blackwell Publishing Inc.
DOI: 10.1111/pbi.13813

Comparative Molecular and Metabolic Profiling of Two Contrasting Wheat Cultivars under Drought Stress

Autores: Fadoul H.E, Martínez Rivas F. , Neumann K., Balazadeh S., Fernie A.R., Alseekh S.
Publicado en: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413287

Ubiquitin proteins and the orchestration of transcription factors activity.

Autores: He Y., Zhang K., Georgiev M.I.
Publicado en: Critical Reviews in Plant Sciences, 2021, ISSN 0735-2689
Editor: Taylor & Francis
DOI: 10.1080/07352689.2021.1951491

A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses

Autores: Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C., Alseekh S., Fernie A.R., Hanson A.D., McCarty D.R.
Publicado en: Metabolites, 2021, ISSN 2218-1989
Editor: MDPI
DOI: 10.3390/metabo11110797

Plant secondary metabolic responses to global climate change: A meta‐analysis in medicinal and aromatic plants

Autores: Yuming Sun, Saleh Alseekh, Alisdair R. Fernie
Publicado en: Global Change Biology, Edición 29, 2023, Página(s) 477-504, ISSN 1354-1013
Editor: Blackwell Publishing Inc.
DOI: 10.1111/gcb.16484

Plant metabolism paves the way for breeding crops with high nutritional value and stable yield

Autores: Jin C., Fang C., Zhang Y., Fernie A.R., Luo J.
Publicado en: Science China Life Sciences, 2021, ISSN 1674-7305
Editor: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2004-0

An advanced deep learning models-based plant disease detection: A review of recent research

Autores: Muhammad Shoaib, Babar Shah, Shaker EI-Sappagh, Akhtar Ali, Asad Ullah, Fayadh Alenezi, Tsanko Gechev, Tariq Hussain, Farman Ali
Publicado en: Frontiers in Plant Science, Edición 14, 2023, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1158933

JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat

Autores: Ding M., He Y., Zhang K., Li J., Shi Y., Zhao M., Meng Y., Georgiev M.I., Zhou M.
Publicado en: The Plant Journal, 2022, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15800

From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants

Autores: Kerbler M. S., Natale R., Fernie A.R., Zhang Y.
Publicado en: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22137101

Conservation and diversification of flavonoid metabolism in the plant kingdom

Autores: Weiwei Wen, Saleh Alseekh, Alisdair R Fernie
Publicado en: Current Opinion in Plant Biology, Edición 55, 2020, Página(s) 100-108, ISSN 1369-5266
Editor: Elsevier BV
DOI: 10.1016/j.pbi.2020.04.004

Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance

Autores: Muhammad B. Faisal, Tsanko S. Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Publicado en: BMC Plant Biology, Edición 20/1, 2020, ISSN 1471-2229
Editor: BioMed Central
DOI: 10.1186/s12870-020-02485-2

The Multiverse of Plant Small RNAs: How Can We Explore It?

Autores: Ivanova Z., Minkov G., Gisel A., Yahubyan G., Minkov I., Toneva V., Baev V.
Publicado en: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23073979

Editorial: Discovery, biosynthesis, regulation, transport, release and engineering of plant natural products

Autores: Wei Zhou, Milen I. Georgiev, Pan Liao
Publicado en: Frontiers in Plant Science, Edición 13, 2022, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.1017808

Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment

Autores: Rane R.N., Tapase S., Kanojia A., Watharkar A., Salama E., Jang M., Yadav K., Amin A.M., Pinto M.S., Cabral-Pinto, Jadhav P.J., Byong-Hun J.
Publicado en: Bioresource Technology, 2022, ISSN 0960-8524
Editor: Elsevier BV
DOI: 10.1016/j.biortech.2021.126246

Rewiring of the seed metabolome during Tartary buckwheat domestication

Autores: Hui Zhao, Yuqi He, Kaixuan Zhang, Shijuan Li, Yong Chen, Ming He, Feng He, Bin Gao, Di Yang, Yu Fan, Xuemei Zhu, Mingli Yan, Nathalie Giglioli‐Guivarc'h, Christophe Hano, Alisdair R. Fernie, Milen I. Georgiev, Dagmar Janovská, Vladimir Meglič, Meiliang Zhou
Publicado en: Plant Biotechnology Journal, Edición 21, 2023, Página(s) 150-164, ISSN 1467-7644
Editor: Blackwell Publishing Inc.
DOI: 10.1111/pbi.13932

Strategic enhancement of genetic gain for nutraceutical development in buckwheat: A genomics-driven perspective

Autores: Dinesh C. Joshi, Kaixuan Zhang, Chenglong Wang, Rahul Chandora, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Meiliang Zhou
Publicado en: Biotechnology Advances, Edición 39, 2020, Página(s) 107479, ISSN 0734-9750
Editor: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107479

Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA

Autores: Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli, E., Martin C.
Publicado en: Metabolic Engineering, 2021, ISSN 2352-3409
Editor: Elsevier BV
DOI: 10.1016/j.dib.2020.106678

Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health?

Autores: Nese Sreenivasulu, Saleh Alseekh, Rhowell N. Tiozon, Andreas Graner, Cathie Martin, Alisdair R. Fernie
Publicado en: Annual Review of Food Science and Technology, Edición 14, 2023, Página(s) 183-202, ISSN 1941-1413
Editor: Annual Reviews Inc.
DOI: 10.1146/annurev-food-060822-113022

Annual Plant Reviews online

Autores: 21. Lyall R., Gechev T.
Publicado en: Annual Plant Reviews online 2020 Volume 3, 2018, ISBN 9781119312994
Editor: Wiley
DOI: 10.1002/9781119312994.apr0730

Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry

Autores: Cindy Llorente, Rosario Jimenez, Jackie, Yariv Brotman, Alisdair R. Fernie, Nese Sreenivasulu
Publicado en: Rice Grain Quality - Methods and Protocols, Edición 1892, 2019, Página(s) 187-199, ISBN 978-1-4939-8912-6
Editor: Springer New York
DOI: 10.1007/978-1-4939-8914-0_11

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance

Autores: Saleh Alseekh, Si Wu, Yariv Brotman, Alisdair R. Fernie
Publicado en: Plant Metabolomics, Edición 1778, 2018, Página(s) 33-46, ISBN 978-1-4939-7818-2
Editor: Springer New York
DOI: 10.1007/978-1-4939-7819-9_3

Metabolomic Analysis of Natural Variation in Arabidopsis

Autores: Si Wu, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie
Publicado en: Arabidopsis Protocols, Edición 2200, 2021, Página(s) 393-411, ISBN 978-1-0716-0879-1
Editor: Springer US
DOI: 10.1007/978-1-0716-0880-7_19

Derechos de propiedad intelectual

ХРАНИТЕЛНА СРЕДА ЗА IN VITRO РАЗМНОЖАВАНЕ НА РАСТЕНИЯ ОТ ВИДA HABERLEA RHODOPENSIS FRIV.

Número de solicitud/publicación: 5174 3980
Fecha: 2020-11-19
Solicitante(s): TSENTAR PO RASTITELNA SISTEMNA BIOLOGIYA I BIOTEHNOGIYA

ХРАНИТЕЛНА СРЕДА ЗА IN VITRO РАЗМНОЖАВАНЕ НА РАСТЕНИЯ ОТ ВИДA HABERLEA RHODOPENSIS FRIV.

Número de solicitud/publicación: 5174 3980
Fecha: 2020-11-19
Solicitante(s): TSENTAR PO RASTITELNA SISTEMNA BIOLOGIYA I BIOTEHNOGIYA

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