Establishment of a Center of Plant Systems Biology and Biotechnology for the translation of fundamental research into sustainable bio-based technologies in Bulgaria

Rezultaty

E-newsletter 2

E-newsletter

New video clip
E-newsletter 4

Enewsletter

Updated project leaflet
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Enewsletter

CPSBB Website

CPSBB Website established

E-newsletter 1

E-newsletter

Publikacje

Reactive Oxygen Species and Abiotic Stress in Plants

Autorzy: Tsanko Gechev, Veselin Petrov
Opublikowane w: International Journal of Molecular Sciences, Numer 21/20, 2020, Strona(/y) 7433, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21207433

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

Autorzy: Youjun Zhang, Ina Krahnert, Antje Bolze, Yves Gibon, Alisdair R. Fernie
Opublikowane w: Current Protocols in Plant Biology, Numer 5/3, 2020, ISSN 2379-8068
Wydawca: Wiley
DOI: 10.1002/cppb.20115

Bringing more players into play: Leveraging stress in genome wide association studies

Autorzy: Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R.
Opublikowane w: Journal of Plant Physiology, 2022, ISSN 0176-1617
Wydawca: Elsevier BV
DOI: 10.1016/j.jplph.2022.153657

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

Autorzy: Wang, J.Y., Alseekh, S., Xiao, T. et al.
Opublikowane w: Communications Biology, 2021, ISSN 2399-3642
Wydawca: Communications Biology
DOI: 10.1038/s42003-021-02740-8

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism

Autorzy: Sandra E Zimmermann, Ruben M Benstein, María Flores-Tornero, Samira Blau, Armand D Anoman, Sara Rosa-Téllez, Silke C Gerlich, Mohamed A Salem, Saleh Alseekh, Stanislav Kopriva
Opublikowane w: Plant Physiology, 2021, ISSN 0032-0889
Wydawca: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab167

Metabolons, enzyme–enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Autorzy: Youjun Zhang, Alisdair R. Fernie
Opublikowane w: Plant Communications, Numer 2/1, 2021, Strona(/y) 100081, ISSN 2590-3462
Wydawca: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100081

Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants?

Autorzy: Federico Scossa, Alisdair R.Fernie
Opublikowane w: Computational and Structural Biotechnology Journal, 2021, ISSN 2001-0370
Wydawca: Elsevier
DOI: 10.1016/j.csbj.2021.03.008

Anthocyanins, multi-functional natural products of industrial relevance: Recent biotechnological advances

Autorzy: Tarun Belwal, Gopal Singh, Philippe Jeandet, Aseesh Pandey, Lalit Giri, Sudipta Ramola, Indra D. Bhatt, Petras Rimantas Venskutonis, Milen I. Georgiev, Christophe Clément, Zisheng Luo
Opublikowane w: Biotechnology Advances, Numer 43, 2020, Strona(/y) 107600, ISSN 0734-9750
Wydawca: Elsevier BV
DOI: 10.1016/j.biotechadv.2020.107600

Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1)

Autorzy: Timm, S., Klaas, N., Niemann, J., Jahnke, K., Alseekh, S., Zhang, Y., Souza, P. V., Hou, L.-Y., Geigenberger, P., Daloso, D. M
Opublikowane w: bioRxiv, 2022, ISSN 2692-8205
Wydawca: bioRxiv
DOI: 10.1101/2022.04.02.486831

Antiobesity molecules of natural origin: Call for lead finding acceleration

Autorzy: Georgiev M.I., Vasileva L.V., Savova M.S.
Opublikowane w: Food Frontiers, 2021, ISSN 2643-8429
Wydawca: Wiley
DOI: 10.1002/fft2.59

Screening of pepper (Capsicum spp.) accessions for infestation by pests in open field conditions.

Autorzy: 47. Yankova V., Todorova V., Markova D.
Opublikowane w: Bulgarian Journal of Agricultural Science. 26 (4), 2020, Strona(/y) 841-846, ISSN 1310-0351
Wydawca: Agricultural Academy
DOI: 10.5281/zenodo.4706815

An Abundance and Interaction Encyclopedia of Plant Protein Function

Autorzy: Youjun Zhang, Aleksandra Skirycz, Alisdair R. Fernie
Opublikowane w: Trends in Plant Science, Numer 25/7, 2020, Strona(/y) 627-630, ISSN 1360-1385
Wydawca: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.006

Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming

Autorzy: Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R.
Opublikowane w: Autophagy, 2022, ISSN 1554-8627
Wydawca: Landes Bioscience
DOI: 10.1080/15548627.2021.2003041

Priming with a Seaweed Extract Strongly Improves Drought Tolerance in Arabidopsis

Autorzy: Fiaz Rasul, Saurabh Gupta, Justyna Jadwiga Olas, Tsanko Gechev, Neerakkal Sujeeth and Bernd Mueller-Roeber
Opublikowane w: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22031469

A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator

Autorzy: Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R.
Opublikowane w: Plant Physiology, 2022, ISSN 0032-0889
Wydawca: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac200

On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins

Autorzy: Youjun Zhang, Alisdair R. Fernie
Opublikowane w: Biomolecules, Numer 10/8, 2020, Strona(/y) 1107, ISSN 2218-273X
Wydawca: MDPI
DOI: 10.3390/biom10081107

Natural products in drug discovery: advances and opportunities

Autorzy: Atanasov A.G., Zotchev S.B., Dirsch V.M., Orhan I.E., Banach M., Rollinger J.M., Barreca D., Weckwerth W., Bauer R., Bayer E.A., Majeed M., Bishayee A., Bochkov V., Bonn G.K., Braidy N., Bucar F., Cifuentes A., D’Onofrio G., Bodkin M., Diederich M., Dinkova-Kostova A.T., Efferth T., El Bairi K., Arkells N., Fan T-P., Fiebich B.L., Freissmuth M., Georgiev M.I. et al.
Opublikowane w: Nature Reviews in Drug Discovery, 2021, ISSN 1474-1776
Wydawca: Nature Publishing Group
DOI: 10.1038/s41573-020-00114-z

The Transcriptional Corepressor HOS15 Mediates Dark-Induced Leaf Senescence in Arabidopsis

Autorzy: Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J.
Opublikowane w: Frontiers in Plant Science, 2022, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.828264

Analysis of the complete mitochondrial genome sequence of the resurrection plant Haberlea rhodopensis

Autorzy: Baev V., Ivanova Z., Yahubyan G., Toneva V., Apostolova E., Minkov G., Minkov I.
Opublikowane w: Acta Biochimica Polonica, 2021, ISSN 0001-527X
Wydawca: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2020_5555

Rapid Identification of Protein‐Protein Interactions in Plants

Autorzy: Youjun Zhang, Roberto Natale, Adilson Pereira Domingues, Mitchell Rey Toleco, Beata Siemiatkowska, Norma Fàbregas, Alisdair R. Fernie
Opublikowane w: Current Protocols in Plant Biology, Numer 4/4, 2019, ISSN 2379-8068
Wydawca: Wiley
DOI: 10.1002/cppb.20099

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Autorzy: Prashant K. Pandey, Jing Yu, Nooshin Omranian, Saleh Alseekh, Neha Vaid, Alisdair R. Fernie, Zoran Nikoloski, Roosa A. E. Laitinen
Opublikowane w: Plant Direct, Numer 3/11, 2019, ISSN 2475-4455
Wydawca: Wiley
DOI: 10.1002/pld3.186

Obesity and NRF2-mediated cytoprotection: Where is the missing link?

Autorzy: Liliya V. Vasileva, Martina S. Savova, Kristiana M. Amirova, Albena T. Dinkova-Kostova, Milen I. Georgiev
Opublikowane w: Pharmacological Research, Numer 156, 2020, Strona(/y) 104760, ISSN 1043-6618
Wydawca: Academic Press
DOI: 10.1016/j.phrs.2020.104760

Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion

Autorzy: Jinbo Li, Yu Meng, Kaixuan Zhang, Qiong Li, Shijuan Li, Bingliang Xu, Milen I Georgiev, Meiliang Zhou
Opublikowane w: Plant Physiology, Numer 185/2, 2020, Strona(/y) 369-384, ISSN 0032-0889
Wydawca: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa043

Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

Autorzy: Leonardo Perez De Souza, Saleh Alseekh, Yariv Brotman, Alisdair R Fernie
Opublikowane w: Expert Review of Proteomics, Numer 17/4, 2020, Strona(/y) 243-255, ISSN 1478-9450
Wydawca: Future Drugs Ltd.
DOI: 10.1080/14789450.2020.1766975

Genome-wide association studies: assessing trait characteristics in model and crop plants.

Autorzy: Alseekh S., Kostova D., Mustafa B., Fernie A.R.
Opublikowane w: Cellular and Molecular Life Sciences, Numer 1420682X, 2021, ISSN 1420-682X
Wydawca: Birkhauser Verlag
DOI: 10.1007/s00018-021-03868-w

The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.

Autorzy: Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M.
Opublikowane w: Scientific Report, 2022, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-021-04433-y

Stable and Temporary Enzyme Complexes and Metabolons Involved in Energy and Redox Metabolism

Autorzy: Youjun Zhang, Alisdair R. Fernie
Opublikowane w: Antioxidants & Redox Signaling, 2020, ISSN 1523-0864
Wydawca: Mary Ann Liebert Inc.
DOI: 10.1089/ars.2019.7981

Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change?

Autorzy: Jorge T. F., Ramalho J. C., Alseekh S., Pais I. P., Leitão A. E., Rodrigues A. P., Scotti-Campos P., Ribeiro-Barros A. I., Fernie A. R., António C.
Opublikowane w: Metabolites, 2021, ISSN 2218-1989
Wydawca: MDPI
DOI: 10.3390/metabo11090593

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity

Autorzy: Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B
Opublikowane w: The Plant Journal, 2022, ISSN 1365-313X
Wydawca: Wiley
DOI: 10.1111/tpj.15770

A. thaliana Hybrids Develop Growth Abnormalities through Integration of Stress, Hormone and Growth Signaling

Autorzy: Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE.
Opublikowane w: Plant Cell Physiology, 2022, ISSN 1471-9053
Wydawca: Japanese Society of Plant Physiologists
DOI: 10.1093/pcp/pcac056

Systems biology of resurrection plants

Autorzy: Gechev T., Lyall R., Petrov V., Bartels D.
Opublikowane w: Cellular and Molecular Life Sciences, 2021, ISSN 1420-9071
Wydawca: Springer
DOI: 10.1007/s00018-021-03913-8

Rice metabolic regulatory network spanning the entire life cycle

Autorzy: Chenkun Yang, Shuangqian Shen, Alisdair R.Fernie, JieLuo
Opublikowane w: Molecular Plant, 2021, ISSN 1674-2052
Wydawca: Oxford University Press
DOI: 10.1016/j.molp.2021.10.005

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water‐deficit stress

Autorzy: Mohamed A. Salem, Takuya Yoshida, Leonardo Perez de Souza, Saleh Alseekh, Krzysztof Bajdzienko, Alisdair R. Fernie, Patrick Giavalisco
Opublikowane w: The Plant Journal, Numer 103/4, 2020, Strona(/y) 1614-1632, ISSN 0960-7412
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14800

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism

Autorzy: Moreno JC, Rojas BE, Vicente R, Gorka M, Matz T, Chodasiewicz M, Peralta-Ariza JS, Zhang Y, Alseekh S, Childs D, Luzarowski M, Nikoloski Z, Zarivach R, Walther D, Hartman MD, Figueroa CM, Iglesias AA, Fernie AR, Skirycz A.
Opublikowane w: The EMBO Jurnal, 2021, ISSN 1460-2075
Wydawca: EMBO Press
DOI: 10.15252/embj.2020106800

Metabolomics: towards acceleration of antibacterial plant-based leads discovery

Autorzy: Sieniawska, E., Georgiev, M.I.
Opublikowane w: Phytochemistry Reviews, 2021, ISSN 1568-7767
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11101-021-09762-4

Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation

Autorzy: He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M.
Opublikowane w: New Phytologist, 2022, ISSN 1469-8137
Wydawca: Wiley
DOI: 10.1111/nph.18306

Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Autorzy: Hao Tong, Anika Küken, Zoran Nikoloski
Opublikowane w: Nature Communications, Numer 11/1, 2020, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-020-16279-5

Network Analysis Provides Insight into Tomato Lipid Metabolism

Autorzy: Anastasiya Kuhalskaya, Micha Wijesingha Ahchige, Leonardo Perez de Souza, José Vallarino, Yariv Brotman, Saleh Alseekh
Opublikowane w: Metabolites, Numer 10/4, 2020, Strona(/y) 152, ISSN 2218-1989
Wydawca: MDPI
DOI: 10.3390/metabo10040152

Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process

Autorzy: Martínez-Rivas FJ, Blanco-Portales R, Moyano E, Alseekh S, Caballero JL, Schwab W, Fernie AR, Muñoz-Blanco J, Molina-Hidalgo FJ
Opublikowane w: Horticulture Research, 2022, ISSN 2052-7276
Wydawca: Oxford Academic
DOI: 10.1093/hr/uhac095

Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles

Autorzy: Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M.
Opublikowane w: Antioxidants, 2022, ISSN 2076-3921
Wydawca: MDPI
DOI: 10.3390/antiox11030462

Plant cell cultures as heterologous bio-factories for secondary metabolite production

Autorzy: Tong Wu, Sandra M.Kerbler, Alisdair R.Fernie, YoujunZhang
Opublikowane w: Plant Communications, 2021, ISSN 2590-3462
Wydawca: Elsevier Inc.
DOI: 10.1016/j.xplc.2021.100235

Metabolomic selection–based machine learning improves fruit taste prediction

Autorzy: Fernie A.R., Alseekh S.
Opublikowane w: Proceedings of the National Academy of Sciences of the United States of America, 2022, ISSN 1091-6490
Wydawca: National Academy of Science
DOI: 10.1073/pnas.2201078119

Development and Optimization of an Enzyme Immunoassay to Detect Serum Antibodies against the Hepatitis E Virus in Pigs, Using Plant-Derived ORF2 Recombinant Protein

Autorzy: Katerina Takova, Tsvetoslav Koynarski, George Minkov, Valentina Toneva, Eugenia Mardanova, Nikolai Ravin, Georgi L. Lukov and Gergana Zahmanova
Opublikowane w: Plant Based Vaccines—A Powerhouse for Global Health 2.0, 2021, ISSN 2076-393X
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines9090991

Genotyping by Sequencing Reveals Genetic Relatedness of Southwestern U.S. Blue Maize Landraces

Autorzy: Nankar A.N., Pratt R.C.
Opublikowane w: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22073436

Creation of pepper doubled haploids and morphological characterization of androgenic plants

Autorzy: Grozeva S., Todorova V., Nankar A.N.
Opublikowane w: Euphytica, 2021, ISSN 0014-2336
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s10681-021-02840-w

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

Autorzy: Eugenia S. Mardanova, Katerina H. Takova, Valentina T. Toneva, Gergana G. Zahmanova, Liudmila M. Tsybalova, Nikolai V. Ravin
Opublikowane w: Biotechnology Letters, Numer 42/11, 2020, Strona(/y) 2441-2446, ISSN 0141-5492
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s10529-020-02995-x

Biotechnologically Produced Lavandula angustifolia Mill. Extract Rich in Rosmarinic Acid Resolves Psoriasis-Related Inflammation Through Janus Kinase/Signal Transducer and Activator of Transcription Signaling

Autorzy: Koycheva I.K., Vasileva L.V., Amirova K.M., Marchev A.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Opublikowane w: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Wydawca: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.680168

The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids

Autorzy: Youjun Zhang, Federico Scossa, Alisdair R. Fernie
Opublikowane w: Molecular Plant, 2021, ISSN 1674-2052
Wydawca: Oxford University Press
DOI: 10.1016/j.molp.2021.08.017

Integrating multi-omics data for crop improvement

Autorzy: Federico Scossa, Saleh Alseekha, Alisdair R.Fernie
Opublikowane w: Journal of Plant Physiology, 2021, ISSN 0176-1617
Wydawca: Elsevier BV
DOI: 10.1016/j.jplph.2020.153352

Unravelling the molecular networks that regulate kiwifruit flavor

Autorzy: Fernie A.R., Alseekh S.
Opublikowane w: New Phytologist, 2021, ISSN 1469-8137
Wydawca: Wiley
DOI: 10.1111/nph.17740

Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects

Autorzy: Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M.
Opublikowane w: Food Reviews International, 2022, ISSN 8755-9129
Wydawca: Marcel Dekker Inc.
DOI: 10.1080/87559129.2022.2067175

Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes

Autorzy: Rafe Lyall, Zoran Nikoloski, Tsanko Gechev
Opublikowane w: International Journal of Molecular Sciences, Numer 21/23, 2020, Strona(/y) 9131, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21239131

Pod indehiscence in common bean is associated with the fine regulation of PvMYB26

Autorzy: Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D., Papa R.
Opublikowane w: Journal of Experimental Botany, 2021, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/eraa553

Regulation of alternative splicing in response to temperature variation in plants

Autorzy: Sheeba John, Justyna Jadwiga Olas, Bernd Mueller Roeber
Opublikowane w: Journal of Experimental Botany, Numer 72(18), 2021, Strona(/y) 6150-6163, ISSN 1460-2431
Wydawca: Society for Experimental Biology
DOI: 10.1093/jxb/erab232

A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles

Autorzy: Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M.
Opublikowane w: Frontiers in Pharmacology, 2022, ISSN 1663-9812
Wydawca: Frontiers Media S.A.
DOI: 10.3389/fphar.2022.840478

The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe

Autorzy: Mohamed A.Salem, Ahmed Zayed, Saleh Alseekh, Alisdair R.Fernie, Patrick Giavalisco
Opublikowane w: Phytochemistry, 2021, ISSN 0031-9422
Wydawca: Elsevier BV
DOI: 10.1016/j.phytochem.2021.112843

A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species

Autorzy: Youjun Zhang, Moxian Chen, Beata Siemiatkowska, Mitchell Rey Toleco, Yue Jing, Vivien Strotmann, Jianghua Zhang, Yvonne Stahl, Alisdair R. Fernie
Opublikowane w: Plant Communications, Numer 1/5, 2020, Strona(/y) 100028, ISSN 2590-3462
Wydawca: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100028

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

Autorzy: Perez de Souza L., Alseekh S., Scossa F., Fernie A.R.
Opublikowane w: Nature Methods, 2021, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/s41592-021-01116-4

Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids

Autorzy: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Opublikowane w: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Wydawca: Birkhauser Verlag
DOI: 10.1007/s00018-021-03918-3

An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress

Autorzy: Nikola S. Staykov, Mihail Angelov, Veselin Petrov, Pavel Minkov, Aakansha Kanojia, Kieran J. Guinan, Saleh Alseekh, Alisdair R. Fernie, Neerakkal Sujeeth and Tsanko S. Gechev
Opublikowane w: Metabolomics in Agriculture Volume 2, 2021, ISSN 2218-1989
Wydawca: MDPI
DOI: 10.3390/metabo11010024

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits

Autorzy: Yi Ren, Maoying Li, Shaogui Guo, Honghe Sun, Jianyu Zhao, Jie Zhang, Guangmin Liu, Hongju He, Shouwei Tian, Yongtao Yu, Guoyi Gong, Haiying Zhang, Xiaolan Zhang, Saleh Alseekh, Alisdair R Fernie, Henrik V Scheller, Yong Xu
Opublikowane w: The Plant Cell, 2021, ISSN 1040-4651
Wydawca: American Society of Plant Biologists
DOI: 10.1093/plcell/koab055

Biotechnological Exploration of Transformed Root Culture for Value-Added Products

Autorzy: Min Shi, Pan Liao, Shivraj Hariram Nile, Milen I. Georgiev, Guoyin Kai
Opublikowane w: Trends in Biotechnology, Numer 39/2, 2021, Strona(/y) 137-149, ISSN 0167-7799
Wydawca: Elsevier BV
DOI: 10.1016/j.tibtech.2020.06.012

Multiomics analyses reveal the roles of the ASR1 transcription factor in tomato fruits

Autorzy: Dominguez P.G., Conti G., Duffy T., Insani M., Alseekh S., Asurmendi S., Fernie A.R., Carrari F.
Opublikowane w: Journal of Experimental Botany, 2021, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/erab269

FtBPM3 modulates the orchestration of FtMYB11-mediated flavonoids biosynthesis in Tartary buckwheat

Autorzy: Ding M., Zhang K., He Y., Zuo Q., Zhao H., He M., Georgiev M.I., Park S.U., Zhou M.
Opublikowane w: Plant Biotechnology Journal, 2021, ISSN 1467-7652
Wydawca: Wiley
DOI: 10.1111/pbi.13587

Tanshinones from Salvia miltiorrhiza inhibit Mycobacterium tuberculosis via disruption of the cell envelope surface and oxidative stress

Autorzy: Elwira Sieniawska, Rafal Sawicki, Andrey S.Marchev, Wieslaw Truszkiewicz, Milen I.Georgiev
Opublikowane w: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Wydawca: Elsevier BV
DOI: 10.1016/j.fct.2021.112405

Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism

Autorzy: M. Toleco, Thomas Naake, Youjun Zhang, Joshua Heazlewood, Alisdair R. Fernie
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Corrigendum to: Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

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SWATH-MS-Based Proteomics: Strategies and Applications in Plants

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Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

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When a Crop Goes Back to the Wild: Feralization

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Efficient Production of Chimeric Hepatitis B Virus-Like Particles Bearing an Epitope of Hepatitis E Virus Capsid by Transient Expression in Nicotiana benthamiana

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Evaluation a collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb

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Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa.

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Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

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Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability

Autorzy: Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M.
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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

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A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits

Autorzy: Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, Dimitrina Kostova
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Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

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Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues

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Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein

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Comparative Molecular and Metabolic Profiling of Two Contrasting Wheat Cultivars under Drought Stress

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Ubiquitin proteins and the orchestration of transcription factors activity.

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Opublikowane w: Critical Reviews in Plant Sciences, 2021, ISSN 0735-2689
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A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses

Autorzy: Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C., Alseekh S., Fernie A.R., Hanson A.D., McCarty D.R.
Opublikowane w: Metabolites, 2021, ISSN 2218-1989
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Plant metabolism paves the way for breeding crops with high nutritional value and stable yield

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JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat

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Opublikowane w: The Plant Journal, 2022, ISSN 0960-7412
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From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants

Autorzy: Kerbler M. S., Natale R., Fernie A.R., Zhang Y.
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Conservation and diversification of flavonoid metabolism in the plant kingdom

Autorzy: Weiwei Wen, Saleh Alseekh, Alisdair R Fernie
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Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance

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The Multiverse of Plant Small RNAs: How Can We Explore It?

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Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment

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Strategic enhancement of genetic gain for nutraceutical development in buckwheat: A genomics-driven perspective

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Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA

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Annual Plant Reviews online

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Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry

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Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance

Autorzy: Saleh Alseekh, Si Wu, Yariv Brotman, Alisdair R. Fernie
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Metabolomic Analysis of Natural Variation in Arabidopsis

Autorzy: Si Wu, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie
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ХРАНИТЕЛНА СРЕДА ЗА IN VITRO РАЗМНОЖАВАНЕ НА РАСТЕНИЯ ОТ ВИДA HABERLEA RHODOPENSIS FRIV.

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