Establishment of a Center of Plant Systems Biology and Biotechnology for the translation of fundamental research into sustainable bio-based technologies in Bulgaria

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Publications

Reactive Oxygen Species and Abiotic Stress in Plants

Auteurs: Tsanko Gechev, Veselin Petrov
Publié dans: International Journal of Molecular Sciences, Numéro 21/20, 2020, Page(s) 7433, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21207433

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

Auteurs: Youjun Zhang, Ina Krahnert, Antje Bolze, Yves Gibon, Alisdair R. Fernie
Publié dans: Current Protocols in Plant Biology, Numéro 5/3, 2020, ISSN 2379-8068
Éditeur: Wiley
DOI: 10.1002/cppb.20115

Bringing more players into play: Leveraging stress in genome wide association studies

Auteurs: Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R.
Publié dans: Journal of Plant Physiology, 2022, ISSN 0176-1617
Éditeur: Elsevier BV
DOI: 10.1016/j.jplph.2022.153657

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

Auteurs: Wang, J.Y., Alseekh, S., Xiao, T. et al.
Publié dans: Communications Biology, 2021, ISSN 2399-3642
Éditeur: Communications Biology
DOI: 10.1038/s42003-021-02740-8

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism

Auteurs: Sandra E Zimmermann, Ruben M Benstein, María Flores-Tornero, Samira Blau, Armand D Anoman, Sara Rosa-Téllez, Silke C Gerlich, Mohamed A Salem, Saleh Alseekh, Stanislav Kopriva
Publié dans: Plant Physiology, 2021, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab167

Metabolons, enzyme–enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Auteurs: Youjun Zhang, Alisdair R. Fernie
Publié dans: Plant Communications, Numéro 2/1, 2021, Page(s) 100081, ISSN 2590-3462
Éditeur: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100081

Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants?

Auteurs: Federico Scossa, Alisdair R.Fernie
Publié dans: Computational and Structural Biotechnology Journal, 2021, ISSN 2001-0370
Éditeur: Elsevier
DOI: 10.1016/j.csbj.2021.03.008

Anthocyanins, multi-functional natural products of industrial relevance: Recent biotechnological advances

Auteurs: Tarun Belwal, Gopal Singh, Philippe Jeandet, Aseesh Pandey, Lalit Giri, Sudipta Ramola, Indra D. Bhatt, Petras Rimantas Venskutonis, Milen I. Georgiev, Christophe Clément, Zisheng Luo
Publié dans: Biotechnology Advances, Numéro 43, 2020, Page(s) 107600, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2020.107600

Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1)

Auteurs: Timm, S., Klaas, N., Niemann, J., Jahnke, K., Alseekh, S., Zhang, Y., Souza, P. V., Hou, L.-Y., Geigenberger, P., Daloso, D. M
Publié dans: bioRxiv, 2022, ISSN 2692-8205
Éditeur: bioRxiv
DOI: 10.1101/2022.04.02.486831

Antiobesity molecules of natural origin: Call for lead finding acceleration

Auteurs: Georgiev M.I., Vasileva L.V., Savova M.S.
Publié dans: Food Frontiers, 2021, ISSN 2643-8429
Éditeur: Wiley
DOI: 10.1002/fft2.59

Screening of pepper (Capsicum spp.) accessions for infestation by pests in open field conditions.

Auteurs: 47. Yankova V., Todorova V., Markova D.
Publié dans: Bulgarian Journal of Agricultural Science. 26 (4), 2020, Page(s) 841-846, ISSN 1310-0351
Éditeur: Agricultural Academy
DOI: 10.5281/zenodo.4706815

An Abundance and Interaction Encyclopedia of Plant Protein Function

Auteurs: Youjun Zhang, Aleksandra Skirycz, Alisdair R. Fernie
Publié dans: Trends in Plant Science, Numéro 25/7, 2020, Page(s) 627-630, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.006

Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming

Auteurs: Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R.
Publié dans: Autophagy, 2022, ISSN 1554-8627
Éditeur: Landes Bioscience
DOI: 10.1080/15548627.2021.2003041

Priming with a Seaweed Extract Strongly Improves Drought Tolerance in Arabidopsis

Auteurs: Fiaz Rasul, Saurabh Gupta, Justyna Jadwiga Olas, Tsanko Gechev, Neerakkal Sujeeth and Bernd Mueller-Roeber
Publié dans: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22031469

A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator

Auteurs: Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R.
Publié dans: Plant Physiology, 2022, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac200

On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins

Auteurs: Youjun Zhang, Alisdair R. Fernie
Publié dans: Biomolecules, Numéro 10/8, 2020, Page(s) 1107, ISSN 2218-273X
Éditeur: MDPI
DOI: 10.3390/biom10081107

Natural products in drug discovery: advances and opportunities

Auteurs: Atanasov A.G., Zotchev S.B., Dirsch V.M., Orhan I.E., Banach M., Rollinger J.M., Barreca D., Weckwerth W., Bauer R., Bayer E.A., Majeed M., Bishayee A., Bochkov V., Bonn G.K., Braidy N., Bucar F., Cifuentes A., D’Onofrio G., Bodkin M., Diederich M., Dinkova-Kostova A.T., Efferth T., El Bairi K., Arkells N., Fan T-P., Fiebich B.L., Freissmuth M., Georgiev M.I. et al.
Publié dans: Nature Reviews in Drug Discovery, 2021, ISSN 1474-1776
Éditeur: Nature Publishing Group
DOI: 10.1038/s41573-020-00114-z

The Transcriptional Corepressor HOS15 Mediates Dark-Induced Leaf Senescence in Arabidopsis

Auteurs: Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J.
Publié dans: Frontiers in Plant Science, 2022, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.828264

Analysis of the complete mitochondrial genome sequence of the resurrection plant Haberlea rhodopensis

Auteurs: Baev V., Ivanova Z., Yahubyan G., Toneva V., Apostolova E., Minkov G., Minkov I.
Publié dans: Acta Biochimica Polonica, 2021, ISSN 0001-527X
Éditeur: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2020_5555

Rapid Identification of Protein‐Protein Interactions in Plants

Auteurs: Youjun Zhang, Roberto Natale, Adilson Pereira Domingues, Mitchell Rey Toleco, Beata Siemiatkowska, Norma Fàbregas, Alisdair R. Fernie
Publié dans: Current Protocols in Plant Biology, Numéro 4/4, 2019, ISSN 2379-8068
Éditeur: Wiley
DOI: 10.1002/cppb.20099

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Auteurs: Prashant K. Pandey, Jing Yu, Nooshin Omranian, Saleh Alseekh, Neha Vaid, Alisdair R. Fernie, Zoran Nikoloski, Roosa A. E. Laitinen
Publié dans: Plant Direct, Numéro 3/11, 2019, ISSN 2475-4455
Éditeur: Wiley
DOI: 10.1002/pld3.186

Obesity and NRF2-mediated cytoprotection: Where is the missing link?

Auteurs: Liliya V. Vasileva, Martina S. Savova, Kristiana M. Amirova, Albena T. Dinkova-Kostova, Milen I. Georgiev
Publié dans: Pharmacological Research, Numéro 156, 2020, Page(s) 104760, ISSN 1043-6618
Éditeur: Academic Press
DOI: 10.1016/j.phrs.2020.104760

Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion

Auteurs: Jinbo Li, Yu Meng, Kaixuan Zhang, Qiong Li, Shijuan Li, Bingliang Xu, Milen I Georgiev, Meiliang Zhou
Publié dans: Plant Physiology, Numéro 185/2, 2020, Page(s) 369-384, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa043

Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

Auteurs: Leonardo Perez De Souza, Saleh Alseekh, Yariv Brotman, Alisdair R Fernie
Publié dans: Expert Review of Proteomics, Numéro 17/4, 2020, Page(s) 243-255, ISSN 1478-9450
Éditeur: Future Drugs Ltd.
DOI: 10.1080/14789450.2020.1766975

Genome-wide association studies: assessing trait characteristics in model and crop plants.

Auteurs: Alseekh S., Kostova D., Mustafa B., Fernie A.R.
Publié dans: Cellular and Molecular Life Sciences, Numéro 1420682X, 2021, ISSN 1420-682X
Éditeur: Birkhauser Verlag
DOI: 10.1007/s00018-021-03868-w

The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.

Auteurs: Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M.
Publié dans: Scientific Report, 2022, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-04433-y

Stable and Temporary Enzyme Complexes and Metabolons Involved in Energy and Redox Metabolism

Auteurs: Youjun Zhang, Alisdair R. Fernie
Publié dans: Antioxidants & Redox Signaling, 2020, ISSN 1523-0864
Éditeur: Mary Ann Liebert Inc.
DOI: 10.1089/ars.2019.7981

Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change?

Auteurs: Jorge T. F., Ramalho J. C., Alseekh S., Pais I. P., Leitão A. E., Rodrigues A. P., Scotti-Campos P., Ribeiro-Barros A. I., Fernie A. R., António C.
Publié dans: Metabolites, 2021, ISSN 2218-1989
Éditeur: MDPI
DOI: 10.3390/metabo11090593

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity

Auteurs: Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B
Publié dans: The Plant Journal, 2022, ISSN 1365-313X
Éditeur: Wiley
DOI: 10.1111/tpj.15770

A. thaliana Hybrids Develop Growth Abnormalities through Integration of Stress, Hormone and Growth Signaling

Auteurs: Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE.
Publié dans: Plant Cell Physiology, 2022, ISSN 1471-9053
Éditeur: Japanese Society of Plant Physiologists
DOI: 10.1093/pcp/pcac056

Systems biology of resurrection plants

Auteurs: Gechev T., Lyall R., Petrov V., Bartels D.
Publié dans: Cellular and Molecular Life Sciences, 2021, ISSN 1420-9071
Éditeur: Springer
DOI: 10.1007/s00018-021-03913-8

Rice metabolic regulatory network spanning the entire life cycle

Auteurs: Chenkun Yang, Shuangqian Shen, Alisdair R.Fernie, JieLuo
Publié dans: Molecular Plant, 2021, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2021.10.005

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water‐deficit stress

Auteurs: Mohamed A. Salem, Takuya Yoshida, Leonardo Perez de Souza, Saleh Alseekh, Krzysztof Bajdzienko, Alisdair R. Fernie, Patrick Giavalisco
Publié dans: The Plant Journal, Numéro 103/4, 2020, Page(s) 1614-1632, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14800

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism

Auteurs: Moreno JC, Rojas BE, Vicente R, Gorka M, Matz T, Chodasiewicz M, Peralta-Ariza JS, Zhang Y, Alseekh S, Childs D, Luzarowski M, Nikoloski Z, Zarivach R, Walther D, Hartman MD, Figueroa CM, Iglesias AA, Fernie AR, Skirycz A.
Publié dans: The EMBO Jurnal, 2021, ISSN 1460-2075
Éditeur: EMBO Press
DOI: 10.15252/embj.2020106800

Metabolomics: towards acceleration of antibacterial plant-based leads discovery

Auteurs: Sieniawska, E., Georgiev, M.I.
Publié dans: Phytochemistry Reviews, 2021, ISSN 1568-7767
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s11101-021-09762-4

Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation

Auteurs: He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M.
Publié dans: New Phytologist, 2022, ISSN 1469-8137
Éditeur: Wiley
DOI: 10.1111/nph.18306

Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Auteurs: Hao Tong, Anika Küken, Zoran Nikoloski
Publié dans: Nature Communications, Numéro 11/1, 2020, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-020-16279-5

Network Analysis Provides Insight into Tomato Lipid Metabolism

Auteurs: Anastasiya Kuhalskaya, Micha Wijesingha Ahchige, Leonardo Perez de Souza, José Vallarino, Yariv Brotman, Saleh Alseekh
Publié dans: Metabolites, Numéro 10/4, 2020, Page(s) 152, ISSN 2218-1989
Éditeur: MDPI
DOI: 10.3390/metabo10040152

Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process

Auteurs: Martínez-Rivas FJ, Blanco-Portales R, Moyano E, Alseekh S, Caballero JL, Schwab W, Fernie AR, Muñoz-Blanco J, Molina-Hidalgo FJ
Publié dans: Horticulture Research, 2022, ISSN 2052-7276
Éditeur: Oxford Academic
DOI: 10.1093/hr/uhac095

Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles

Auteurs: Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M.
Publié dans: Antioxidants, 2022, ISSN 2076-3921
Éditeur: MDPI
DOI: 10.3390/antiox11030462

Plant cell cultures as heterologous bio-factories for secondary metabolite production

Auteurs: Tong Wu, Sandra M.Kerbler, Alisdair R.Fernie, YoujunZhang
Publié dans: Plant Communications, 2021, ISSN 2590-3462
Éditeur: Elsevier Inc.
DOI: 10.1016/j.xplc.2021.100235

Metabolomic selection–based machine learning improves fruit taste prediction

Auteurs: Fernie A.R., Alseekh S.
Publié dans: Proceedings of the National Academy of Sciences of the United States of America, 2022, ISSN 1091-6490
Éditeur: National Academy of Science
DOI: 10.1073/pnas.2201078119

Development and Optimization of an Enzyme Immunoassay to Detect Serum Antibodies against the Hepatitis E Virus in Pigs, Using Plant-Derived ORF2 Recombinant Protein

Auteurs: Katerina Takova, Tsvetoslav Koynarski, George Minkov, Valentina Toneva, Eugenia Mardanova, Nikolai Ravin, Georgi L. Lukov and Gergana Zahmanova
Publié dans: Plant Based Vaccines—A Powerhouse for Global Health 2.0, 2021, ISSN 2076-393X
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines9090991

Genotyping by Sequencing Reveals Genetic Relatedness of Southwestern U.S. Blue Maize Landraces

Auteurs: Nankar A.N., Pratt R.C.
Publié dans: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22073436

Creation of pepper doubled haploids and morphological characterization of androgenic plants

Auteurs: Grozeva S., Todorova V., Nankar A.N.
Publié dans: Euphytica, 2021, ISSN 0014-2336
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10681-021-02840-w

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

Auteurs: Eugenia S. Mardanova, Katerina H. Takova, Valentina T. Toneva, Gergana G. Zahmanova, Liudmila M. Tsybalova, Nikolai V. Ravin
Publié dans: Biotechnology Letters, Numéro 42/11, 2020, Page(s) 2441-2446, ISSN 0141-5492
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10529-020-02995-x

Biotechnologically Produced Lavandula angustifolia Mill. Extract Rich in Rosmarinic Acid Resolves Psoriasis-Related Inflammation Through Janus Kinase/Signal Transducer and Activator of Transcription Signaling

Auteurs: Koycheva I.K., Vasileva L.V., Amirova K.M., Marchev A.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Publié dans: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.680168

The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids

Auteurs: Youjun Zhang, Federico Scossa, Alisdair R. Fernie
Publié dans: Molecular Plant, 2021, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2021.08.017

Integrating multi-omics data for crop improvement

Auteurs: Federico Scossa, Saleh Alseekha, Alisdair R.Fernie
Publié dans: Journal of Plant Physiology, 2021, ISSN 0176-1617
Éditeur: Elsevier BV
DOI: 10.1016/j.jplph.2020.153352

Unravelling the molecular networks that regulate kiwifruit flavor

Auteurs: Fernie A.R., Alseekh S.
Publié dans: New Phytologist, 2021, ISSN 1469-8137
Éditeur: Wiley
DOI: 10.1111/nph.17740

Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects

Auteurs: Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M.
Publié dans: Food Reviews International, 2022, ISSN 8755-9129
Éditeur: Marcel Dekker Inc.
DOI: 10.1080/87559129.2022.2067175

Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes

Auteurs: Rafe Lyall, Zoran Nikoloski, Tsanko Gechev
Publié dans: International Journal of Molecular Sciences, Numéro 21/23, 2020, Page(s) 9131, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21239131

Pod indehiscence in common bean is associated with the fine regulation of PvMYB26

Auteurs: Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D., Papa R.
Publié dans: Journal of Experimental Botany, 2021, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/eraa553

Regulation of alternative splicing in response to temperature variation in plants

Auteurs: Sheeba John, Justyna Jadwiga Olas, Bernd Mueller Roeber
Publié dans: Journal of Experimental Botany, Numéro 72(18), 2021, Page(s) 6150-6163, ISSN 1460-2431
Éditeur: Society for Experimental Biology
DOI: 10.1093/jxb/erab232

A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles

Auteurs: Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M.
Publié dans: Frontiers in Pharmacology, 2022, ISSN 1663-9812
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fphar.2022.840478

The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe

Auteurs: Mohamed A.Salem, Ahmed Zayed, Saleh Alseekh, Alisdair R.Fernie, Patrick Giavalisco
Publié dans: Phytochemistry, 2021, ISSN 0031-9422
Éditeur: Elsevier BV
DOI: 10.1016/j.phytochem.2021.112843

A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species

Auteurs: Youjun Zhang, Moxian Chen, Beata Siemiatkowska, Mitchell Rey Toleco, Yue Jing, Vivien Strotmann, Jianghua Zhang, Yvonne Stahl, Alisdair R. Fernie
Publié dans: Plant Communications, Numéro 1/5, 2020, Page(s) 100028, ISSN 2590-3462
Éditeur: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100028

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

Auteurs: Perez de Souza L., Alseekh S., Scossa F., Fernie A.R.
Publié dans: Nature Methods, 2021, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/s41592-021-01116-4

Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids

Auteurs: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Publié dans: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Éditeur: Birkhauser Verlag
DOI: 10.1007/s00018-021-03918-3

An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress

Auteurs: Nikola S. Staykov, Mihail Angelov, Veselin Petrov, Pavel Minkov, Aakansha Kanojia, Kieran J. Guinan, Saleh Alseekh, Alisdair R. Fernie, Neerakkal Sujeeth and Tsanko S. Gechev
Publié dans: Metabolomics in Agriculture Volume 2, 2021, ISSN 2218-1989
Éditeur: MDPI
DOI: 10.3390/metabo11010024

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits

Auteurs: Yi Ren, Maoying Li, Shaogui Guo, Honghe Sun, Jianyu Zhao, Jie Zhang, Guangmin Liu, Hongju He, Shouwei Tian, Yongtao Yu, Guoyi Gong, Haiying Zhang, Xiaolan Zhang, Saleh Alseekh, Alisdair R Fernie, Henrik V Scheller, Yong Xu
Publié dans: The Plant Cell, 2021, ISSN 1040-4651
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plcell/koab055

Biotechnological Exploration of Transformed Root Culture for Value-Added Products

Auteurs: Min Shi, Pan Liao, Shivraj Hariram Nile, Milen I. Georgiev, Guoyin Kai
Publié dans: Trends in Biotechnology, Numéro 39/2, 2021, Page(s) 137-149, ISSN 0167-7799
Éditeur: Elsevier BV
DOI: 10.1016/j.tibtech.2020.06.012

Multiomics analyses reveal the roles of the ASR1 transcription factor in tomato fruits

Auteurs: Dominguez P.G., Conti G., Duffy T., Insani M., Alseekh S., Asurmendi S., Fernie A.R., Carrari F.
Publié dans: Journal of Experimental Botany, 2021, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/erab269

FtBPM3 modulates the orchestration of FtMYB11-mediated flavonoids biosynthesis in Tartary buckwheat

Auteurs: Ding M., Zhang K., He Y., Zuo Q., Zhao H., He M., Georgiev M.I., Park S.U., Zhou M.
Publié dans: Plant Biotechnology Journal, 2021, ISSN 1467-7652
Éditeur: Wiley
DOI: 10.1111/pbi.13587

Tanshinones from Salvia miltiorrhiza inhibit Mycobacterium tuberculosis via disruption of the cell envelope surface and oxidative stress

Auteurs: Elwira Sieniawska, Rafal Sawicki, Andrey S.Marchev, Wieslaw Truszkiewicz, Milen I.Georgiev
Publié dans: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2021.112405

Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism

Auteurs: M. Toleco, Thomas Naake, Youjun Zhang, Joshua Heazlewood, Alisdair R. Fernie
Publié dans: Plants, Numéro 9/1, 2020, Page(s) 117, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants9010117

Using Metabolomics to Assist Plant Breeding.

Auteurs: Alseekh S., Fernie A.R.
Publié dans: Methods in Molecular Biology, 2021, ISSN 1064-3745
Éditeur: Humana Press, Inc.
DOI: 10.1007/978-1-0716-1201-9_3

Large-scale multi-omics genome-wide association studies (Mo-GWAS): guidelines for sample preparation and normalization

Auteurs: Bulut M., Fernie A.R., Alseekh S.
Publié dans: Jove-Journal of Visualized Experiments, 2021, ISSN 1940-087X
Éditeur: MYJoVE Corporation
DOI: 10.3791/62732

Biotechnologically-Produced Myconoside and Calceolarioside E Induce Nrf2 Expression in Neutrophils

Auteurs: Amirova K.M., Dimitrova P.A., Marchev A.S., Krustanova S., Simova S., Alipieva K., Georgiev M.I.
Publié dans: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22041759

Leucosceptoside A from Devil’s Claw Modulates Psoriasis-like Inflammation via Suppression of the PI3K/AKT Signaling Pathway in Keratinocytes

Auteurs: Koycheva I.K., Mihaylova L.V., Todorova M.N., Balcheva-Sivenova Z.P., Alipieva K., Ferrante C., Orlando G., Georgiev M.I.
Publié dans: Molecules, 2021, ISSN 1420-3049
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26227014

Plant-Derived Recombinant Vaccines against Zoonotic Viruses

Auteurs: Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L.
Publié dans: Life, 2022, ISSN 2075-1729
Éditeur: MDPI
DOI: 10.3390/life12020156

Using precision phenotyping to inform de novo domestication

Auteurs: Fernie A.R., Alseekh S., Liu J., Yan J.
Publié dans: Plant Phisiology, 2021, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab160

MicroRNA-Mediated Metabolic Reprograming in Renal Cancer

Auteurs: Bogusławska, Popławski, Alseekh, Koblowska, Iwanicka-Nowicka, Rybicka, Kędzierska, Głuchowska, Hanusek, Tański, Fernie, Piekiełko-Witkowska
Publié dans: Cancers, Numéro 11/12, 2019, Page(s) 1825, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers11121825

First report of tomato spotted wilt virus on lisianthus (Eustoma grandiflorum) in Bulgaria

Auteurs: Gancho Pasev, Vesela Radeva-Ivanova, Rafe Lyall, Amol Nankar, Dimitrina Kostova, Massimo Turina, Marta Vallino
Publié dans: Journal of Plant Pathology, Numéro 103/1, 2021, Page(s) 375-375, ISSN 1125-4653
Éditeur: Societa Italiana di Patologia Vegetale
DOI: 10.1007/s42161-020-00702-3

A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts

Auteurs: Youjun Zhang, Arun Sampathkumar, Sandra Mae-Lin Kerber, Corné Swart, Carsten Hille, Kumar Seerangan, Alexander Graf, Lee Sweetlove, Alisdair R. Fernie
Publié dans: Nature Communications, Numéro 11/1, 2020, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-020-18234-w

Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex

Auteurs: 39. Tohge T., Scossa F., Wendenburg R., Frasse P., Balbo I., Watanabe M., Alseekh S., Jadhav S., Delfin J., Lohse M., Giavalisco P., Usadel B., Zhang Y., Luo J., Bouzayen M., Fernie A.R.
Publié dans: Molecular Plant Volume 13, Numéro 7, 2020, Page(s) 1027-1046, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2020.04.004

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Auteurs: Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R.
Publié dans: Current protocols, 2022, ISSN 2691-1299
Éditeur: Wiley
DOI: 10.1002/cpz1.371

Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Auteurs: Kaixuan Zhang, Milen I. Georgiev and Meiliang Zhou1
Publié dans: Genom Biology, 2021, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1186/s13059-020-02217-7

Treasure from garden: Bioactive compounds of buckwheat

Auteurs: Md. Nurul Huda, Shuai Lu, Tanzim Jahan, Mengqi Ding, Rintu Jha, Kaixuan Zhang, Wei Zhang, Milen I. Georgiev, Sang Un Park, Meiliang Zhou
Publié dans: Food Chemistry, Numéro 335, 2021, Page(s) 127653, ISSN 0308-8146
Éditeur: Elsevier BV
DOI: 10.1016/j.foodchem.2020.127653

Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance

Auteurs: Jiang L., Yoshida T., Stiegert S., Jing, Y., Alseekh S., Lenhard M., Pérez-Alfocea F., Fernie A.R.
Publié dans: Plant Phisiology, 2021, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa034

Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

Auteurs: Aakansha Kanojia, Saurabh Gupta, Maria Benina, Alisdair R Fernie, Bernd Mueller-Roeber, Tsanko Gechev, Paul P Dijkwel
Publié dans: Journal of Experimental Botany, Numéro 71/20, 2020, Page(s) 6340-6354, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/eraa347

Therapeutic potential of phenylethanoid glycosides: A systematic review

Auteurs: Lipeng Wu, Milen I. Georgiev, Hui Cao, Lutfun Nahar, Hesham R. El‐Seedi, Satyajit D. Sarker, Jianbo Xiao, Baiyi Lu
Publié dans: Medicinal Research Reviews, Numéro 40/6, 2020, Page(s) 2605-2649, ISSN 0198-6325
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/med.21717

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis

Auteurs: Mohamed A. Salem, Leonardo Perez de Souza, Ahmed Serag, Alisdair R. Fernie, Mohamed A. Farag, Shahira M. Ezzat, Saleh Alseekh
Publié dans: Metabolites, Numéro 10/1, 2020, Page(s) 37, ISSN 2218-1989
Éditeur: MDPI
DOI: 10.3390/metabo10010037

Dissection of the domestication‐shaped genetic architecture of lettuce primary metabolism

Auteurs: Weiyi Zhang, Saleh Alseekh, Xiang Zhu, Qinghua Zhang, Alisdair R. Fernie, Hanhui Kuang, Weiwei Wen
Publié dans: The Plant Journal, Numéro 104/3, 2020, Page(s) 613-630, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14950

Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis

Auteurs: YoujunZhang,Jonas Giese,Sandra M.Kerbler,Beata Siemiatkowska, Leonardo Perez de Souza, Jessica Alper, David Barbosa Medeiro, Dirk K.Hinch, Danilo M.Daloso, Mark Stitt, Iris Finkemeier, Alisdair R.Fernie
Publié dans: Molecular Plant, 2021, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2021.03.023

Green (cell) factories for advanced production of plant secondary metabolites

Auteurs: Andrey S. Marchev, Zhenya P. Yordanova, Milen I. Georgiev
Publié dans: Critical Reviews in Biotechnology, Numéro 40/4, 2020, Page(s) 443-458, ISSN 0738-8551
Éditeur: Taylor & Francis
DOI: 10.1080/07388551.2020.1731414

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

Auteurs: Yan Li, Yang Chen, Lu Zhou, Shengjie You, Heng Deng, Ya Chen, Saleh Alseekh, Yong Yuan, Rao Fu, Zixin Zhang, Dan Su, Alisdair R. Fernie, Mondher Bouzayen, Tao Ma, Mingchun Liu, Yang Zhang
Publié dans: Molecular Plant, Numéro 13/8, 2020, Page(s) 1203-1218, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2020.06.005

First report of Cucurbit aphid-borne yellows virus causing yellowing disease on pumpkin (Cucurbita pepo) and cucumber (Cucumis sativus) in Bulgaria

Auteurs: Radeva-Ivanova V., Pasev G., Lyall R., Angelov M., Nankar A.N., Kostova D.
Publié dans: APS Journal, 2022, ISSN 0191-2917
Éditeur: American Phytopathological Society
DOI: 10.1094/pdis-09-21-2030-pdn

Characterization of effects of genetic variants via genome-scale metabolic modelling.

Auteurs: Tong, H., Küken, A., Razaghi-Moghadam, Z. Nikoloski
Publié dans: Cellular and Molecular Life Sciences, 2021, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1007/s00018-021-03844-4

The Assembly of Super-Complexes in the Plant Chloroplast

Auteurs: Qin K., Fernie A.R., Zhang Y.
Publié dans: Biomolecules, 2021, ISSN 2218-273X
Éditeur: MDPI
DOI: 10.3390/biom11121839

Primary metabolic processes as drivers of leaf ageing.

Auteurs: Kanojia A., Shrestha K.D., Dijkwel P.
Publié dans: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Éditeur: Birkhauser Verlag
DOI: 10.1007/s00018-021-03896-6

Evaluation of pepper (Capsicum annuum L.) varieties to several methods of inoculation with Verticillium dahliae Kleb. in different conditions

Auteurs: Vasileva K., Todorova V.
Publié dans: Bulgarian Journal of Agricultural Sciences 26 (2), 2020, Page(s) 423–430, ISSN 1310-0351
Éditeur: Agricultural Academy
DOI: 10.5281/zenodo.4707211

Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.

Auteurs: Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J.
Publié dans: Science China Life Sciences, 2022, ISSN 1674-7305
Éditeur: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2064-7

MeJA-responsive bHLH transcription factor LjbHLH7 regulates cyanogenic glucoside biosynthesis in Lotus japonicus

Auteurs: Chen C., Liu F., Zhang K., Niu X., Zhao H., Liu Q., Georgiev M.I., Xu X., Zhang X., Zhou M.
Publié dans: Journal of Experimental Botany, 2022, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/erac026

L2,1-norm regularized multivariate regression model with applications to genomic prediction

Auteurs: Mbebi AJ, Tong H, Nikoloski Z
Publié dans: Bioinformatics, 2021, ISSN 1367-4803
Éditeur: Oxford University Press
DOI: 10.1093/bioinformatics/btab212

Anti-Adipogenic Effect of Alchemilla monticola is Mediated Via PI3K/AKT Signaling Inhibition in Human Adipocytes

Auteurs: Mladenova S.G., Vasileva L.V., Savova M.S., Marchev A.S., Tews D., Wabitsch M., Ferrante C., Orlando G., Georgiev M.I.
Publié dans: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.707507

PlantaSyst: Teaming up for Systems Biology and Biotechnology

Auteurs: Tsanko Gechev, Milen I. Georgiev, Alisdair R. Fernie
Publié dans: Trends in Plant Science, Numéro 25/7, 2020, Page(s) 621-624, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.010

Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass

Auteurs: Krahmer J., Abbas A., Mengin V., Ishihara H., Romanowski A., Furniss J.J., Moraes T.A., Krohn N., Annunziata M.G., Feil R., Alseekh S., Obata T., Fernie A.R., Stitt M. and Halliday, K.J.
Publié dans: Journal of Experimental Botany, 2021, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/erab038

Multi-omics analysis of early leaf development in Arabidopsis thaliana

Auteurs: Omidbakhshfard M. A., Sokolowska E. M., Di Vittori V., Perez de Souza L., Kuhalskaya A., Brotman Y., Alseekh S., Fernie A.R., Skirycz, A.
Publié dans: Patterns, 2021, ISSN 2666-3899
Éditeur: Elsevier
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Usnic Acid Treatment Changes the Composition of Mycobacterium tuberculosis Cell Envelope and Alters Bacterial Redox Status

Auteurs: Elwira Sieniawska, Rafal Sawicki, Wieslaw Truszkiewicz, Andrey S. Marchev, Milen I. Georgiev
Publié dans: ASM Journals mSystems Vol. 6, No. 3, 2021, ISSN 0021-9193
Éditeur: American Society for Microbiology
DOI: 10.1128/msystems.00097-21

Circadian Control of Metabolism by the Clock Component TOC1

Auteurs: Cervela-Cardona L., Yoshida T., Zhang Y., Okada M., Fernie A.R., Mas P.,
Publié dans: Frotiers in Plant Sciennce, 2021, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.683516

Assessment of Fruit Quality and Fruit Morphology in Androgenic Pepper Lines (Capsicum annuum L.)

Auteurs: Grozeva S., Tringovska I., Nankar AN., Todorova V., Kostova D.
Publié dans: Crop Breeding, Genetics and Genomics, Numéro Crop Breed Genet Genom. 2020;2(1):e200005., 2020, ISSN 2632-7309
Éditeur: Hapres
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Effect of incubation period and culture medium on pepper anther culture.

Auteurs: Grozeva S., Nankar AN.
Publié dans: Effect of incubation period and culture medium on pepper anther culture. Indian Journal of Biotechnology. 19 (1), 2020, Page(s) 53-59, ISSN 0975-0967
Éditeur: Indian Journal of Biotechnology
DOI: 10.5281/zenodo.4711172

The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition

Auteurs: Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Jr. Tiozon R.N., Anonuevo J.J., deGuzman M.K., Alseekh S., Mbanjo E.G.N., Boyd L.A., Fernie A.R., Sreenivasulu N.
Publié dans: The Plant Journal, 2021, ISSN 1365-313X
Éditeur: Wiley
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Isolation, Structural Properties, and Bioactivities of Polysaccharides from Mushrooms Termitomyces: A Review

Auteurs: Liu J., Wang Y., Wu J., Georgiev M.I., Xu B., Wong K.H., Bai W., Tian L.
Publié dans: Journal of Agricultural and Food Chemistry, 2022, ISSN 0021-8561
Éditeur: American Chemical Society
DOI: 10.1021/acs.jafc.1c06443

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Auteurs: Kroc M., Tomaszewska M., Czepiel K., Bitocchi E., Oppermann M., Neumann K., Guasch L., Bellucci E., Alseekh S., Graner A., Fernie A.R., Papa R., Susek K.
Publié dans: Current Protocols, 2021, ISSN 2691-1299
Éditeur: Wiley
DOI: 10.1002/cpz1.191

Corrigendum to: Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

Auteurs: Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G.
Publié dans: The Plant cell, 2022, ISSN 1040-4651
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plcell/koab262

SWATH-MS-Based Proteomics: Strategies and Applications in Plants

Auteurs: Mo-Xian Chen, Youjun Zhang, Alisdair R. Fernie, Ying-Gao Liu, Fu-Yuan Zhu
Publié dans: Trends in Biotechnology, Numéro 39/5, 2021, Page(s) 433-437, ISSN 0167-7799
Éditeur: Elsevier BV
DOI: 10.1016/j.tibtech.2020.09.002

Domestication of Crop Metabolomes: Desired and Unintended Consequences

Auteurs: Alseekh S., Scossa F., Wen W., Luo J., Yan J., Beleggia R., Klee H.J., Huang S., Papa R., Fernie A.R.
Publié dans: Trends in Plant Science, 2021, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.005

Rosmarinic acid attenuates obesity and obesity-related inflammation in human adipocytes

Auteurs: Liliya V.Vasileva, Martina S.Savova, Daniel Tews, Martin Wabitsch, Milen I.Georgiev
Publié dans: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2021.112002

Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits

Auteurs: Tong H., Nankar A.N., Liu J., Todorova V., Ganeva D., Grozeva S., Tringovska I., Pasev G., Radeva-Ivanova V., Gechev T., Kostova D., Nikoloski Z. (
Publié dans: Horticulture Research, 2022, ISSN 2052-7276
Éditeur: Oxford Academic
DOI: 10.1093/hr/uhac072

Quantitative trait loci analysis of seed‐specialized metabolites reveals seed‐specific flavonols and differential regulation of glycoalkaloid content in tomato

Auteurs: Saleh Alseekh, Itai Ofner, Zhongyuan Liu, Sonia Osorio, Jose Vallarino, Robert L. Last, Dani Zamir, Takayuki Tohge, Alisdair R. Fernie
Publié dans: The Plant Journal, Numéro 103/6, 2020, Page(s) 2007-2024, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14879

MicroRNA profiling the resurrection plant Haberlea rhodopensis unveils essential regulators of survival under severe drought

Auteurs: E. APOSTOLOVA, M. GOZMANOVA, L. NACHEVA, Z. IVANOVA, V. TONEVA, I. MINKOV, V. BAEV, G. YAHUBYAN
Publié dans: Biologia plantarum, Numéro 64, 2020, Page(s) 541-550, ISSN 0006-3134
Éditeur: Kluwer Academic Publishers
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Anti-adipogenic activity of maackiain and ononin is mediated via inhibition of PPARγ in human adipocytes

Auteurs: Mladenova S.G., Savova M.S., Marchev A.S., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I.
Publié dans: Biomedicine and Pharmacotherapy, 2022, ISSN 0753-3322
Éditeur: Elsevier Masson
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The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Auteurs: Bellucci E., Aguilar O.M., Alseekh S., Bett K., Brezeanu C., Cook D., De la Rosa L., Delledonne M., Dostatny D.F., Ferreira J.J., Geffroy V., Ghitarrini S., Kroc M., Kumar Agrawal S, Logozzo G., Marino M., Mary-Huard T., McClean P., Megli V., Messer T., Muel F., Nanni L., Neumann K., Servalli F., Străjeru S., Varshney R. K., Vasconcelos M. W., Zaccardelli M., Zavarzin A., Bitocchi E., Frontoni E.
Publié dans: The Plant Journal, 2021, ISSN 1365-313X
Éditeur: Wiley
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Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis

Auteurs: Feng Zhu, Saleh Alseekh, Kaan Koper, Hao Tong, Zoran Nikoloski, Thomas Naake, Haijun Liu, Jianbing Yan, Yariv Brotman, Weiwei Wen, Hiroshi Maeda, Yunjiang Cheng, and Alisdair R Fernie
Publié dans: The Plant Cell, 2022, ISSN 3462-3442
Éditeur: Oxford University Press
DOI: 10.1093/plcell/koab251

Formulation and Testing of Antioxidant and Protective Effect of Hyalurosomes Loading Extract Rich in Rosmarinic Acid Biotechnologically Produced from Lavandula angustifolia Miller

Auteurs: Perra M., Fancello L., Castangia I., Allaw M., Escribano-Ferrer E., Peris J.E., Usach I., Manca M.L., Koycheva I.K., Georgiev M.I., Manconi M.
Publié dans: Molecules, 2022, ISSN 1420-3049
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules27082423

Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation-tolerant plant

Auteurs: Meriem Durgud, Saurabh Gupta, Ivan Ivanov, Amin Omidbakhshfard, Maria Benina, Saleh Alseekh, Nikola Staykov, Mareike Hauenstein, Paul Dijkwel, Stefan Hörtensteiner, Valentina Toneva, Yariv Brotman, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko Gechev
Publié dans: Plant Physiology, 2018, Page(s) pp.00055.2018, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
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Jasmonate-responsive MYB factors spatially repress rutin biosynthesis in Fagopyrum tataricum

Auteurs: Kaixuan Zhang, Maria D Logacheva, Yu Meng, Jianping Hu, Dongpu Wan, Long Li, Dagmar Janovská, Zhiyong Wang, Milen I Georgiev, Zhuo Yu, Fuyu Yang, Mingli Yan, Meiliang Zhou
Publié dans: Journal of Experimental Botany, Numéro 69/8, 2018, Page(s) 1955-1966, ISSN 0022-0957
Éditeur: Oxford University Press
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Targeting ncRNAs by plant secondary metabolites: The ncRNAs game in the balance towards malignancy inhibition

Auteurs: Diana Gulei, Nikolay Mehterov, Seyed Mohammad Nabavi, Atanas Georgiev Atanasov, Ioana Berindan-Neagoe
Publié dans: Biotechnology Advances, 2017, ISSN 0734-9750
Éditeur: Elsevier BV
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Metabolomics 20 years on: what have we learned and what hurdles remain?

Auteurs: Saleh Alseekh, Alisdair R. Fernie
Publié dans: The Plant Journal, Numéro 94/6, 2018, Page(s) 933-942, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
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The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants

Auteurs: Federico Scossa, Maria Benina, Saleh Alseekh, Youjun Zhang, Alisdair Fernie
Publié dans: Planta Medica, 2018, ISSN 0032-0943
Éditeur: Georg Thieme Verlag
DOI: 10.1055/a-0630-1899

Quantitative trait loci analysis identifies a prominent gene involved in the production of fatty-acid-derived flavor volatiles in tomato

Auteurs: Karolina Garbowicz, Zhongyuan Liu, Saleh Alseekh, Denise Tieman, Mark Taylor, Anastasiya Kuhalskaya, Itai Ofner, Dani Zamir, Harry J. Klee, Alisdair R. Fernie, Yariv Brotman
Publié dans: Molecular Plant, 2018, ISSN 1674-2052
Éditeur: Oxford University Press
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The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato

Auteurs: Xuemin Ma, Youjun Zhang, Veronika Turečková, Gang-Ping Xue, Alisdair R. Fernie, Bernd Mueller-Roeber, Salma Balazadeh
Publié dans: Plant Physiology, Numéro 177/3, 2018, Page(s) 1286-1302, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
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Defining the convergence of ethylene and auxin signaling in tomato

Auteurs: Alisdair R. Fernie, Saleh Alseekh
Publié dans: New Phytologist, Numéro 219/2, 2018, Page(s) 479-481, ISSN 0028-646X
Éditeur: Blackwell Publishing Inc.
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Modifications of dietary flavonoids towards improved bioactivity: An update on structure–activity relationship

Auteurs: Lei Chen, Hui Teng, Zhenglu Xie, Hui Cao, Wai San Cheang, Krystyna Skalicka-Woniak, Milen I. Georgiev, Jianbo Xiao
Publié dans: Critical Reviews in Food Science and Nutrition, Numéro 58/4, 2017, Page(s) 513-527, ISSN 1040-8398
Éditeur: Taylor & Francis
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Rewiring of the Fruit Metabolome in Tomato Breeding

Auteurs: Guangtao Zhu, Shouchuang Wang, Zejun Huang, Shuaibin Zhang, Qinggang Liao, Chunzhi Zhang, Tao Lin, Mao Qin, Meng Peng, Chenkun Yang, Xue Cao, Xu Han, Xiaoxuan Wang, Esther van der Knaap, Zhonghua Zhang, Xia Cui, Harry Klee, Alisdair R. Fernie, Jie Luo, Sanwen Huang
Publié dans: Cell, Numéro 172/1-2, 2018, Page(s) 249-261.e12, ISSN 0092-8674
Éditeur: Cell Press
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Occurrence, biochemistry and biological effects of host-selective plant mycotoxins

Auteurs: Veselin Petrov, Muhammad Kamran Qureshi, Jacques Hille, Tsanko Gechev
Publié dans: Food and Chemical Toxicology, Numéro 112, 2018, Page(s) 251-264, ISSN 0278-6915
Éditeur: Elsevier BV
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Nutrigenomics in cancer: Revisiting the effects of natural compounds

Auteurs: Cornelia Braicu, Nikolay Mehterov, Boyan Vladimirov, Victoria Sarafian, Seyed Mohammad Nabavi, Atanas G. Atanasov, Ioana Berindan-Neagoe
Publié dans: Seminars in Cancer Biology, Numéro 46, 2017, Page(s) 84-106, ISSN 1044-579X
Éditeur: Academic Press
DOI: 10.1016/j.semcancer.2017.06.011

Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

Auteurs: Kevin Schwahn, Romina Beleggia, Nooshin Omranian, Zoran Nikoloski
Publié dans: Frontiers in Plant Science, Numéro 8, 2017, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.02152

Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation

Auteurs: Saurabh Gupta, Yanni Dong, Paul P. Dijkwel, Bernd Mueller-Roeber, Tsanko S. Gechev
Publié dans: International Journal of Molecular Sciences, Numéro 20/12, 2019, Page(s) 3101, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms20123101

On the role of the tricarboxylic acid cycle in plant productivity

Auteurs: Youjun Zhang, Alisdair R. Fernie
Publié dans: Journal of Integrative Plant Biology, Numéro 60/12, 2018, Page(s) 1199-1216, ISSN 1672-9072
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jipb.12690

Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation

Auteurs: Yi Zhang, Youjun Zhang, Heather E. McFarlane, Toshihiro Obata, Andreas S. Richter, Mark Lohse, Bernhard Grimm, Staffan Persson, Alisdair R. Fernie, Patrick Giavalisco
Publié dans: Plant Physiology, Numéro 178/1, 2018, Page(s) 101-117, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1104/pp.18.00684

First report of Peanut stunt virus on beans in Bulgaria

Auteurs: G. Pasev, V. Radeva-Ivanova, Y. Manoussopoulos, M. Turina, D. Kostova
Publié dans: New Disease Reports, Numéro 38, 2018, Page(s) 9, ISSN 2044-0588
Éditeur: The British Society for Plant Pathology
DOI: 10.5197/j.2044-0588.2018.038.009

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Auteurs: Adriano Nunes-Nesi, Saleh Alseekh, Franklin Magnum de Oliveira Silva, Nooshin Omranian, Gabriel Lichtenstein, Mohammad Mirnezhad, Roman R. Romero González, Julia Sabio y Garcia, Mariana Conte, Kirsten A. Leiss, Peter G. L. Klinkhamer, Zoran Nikoloski, Fernando Carrari, Alisdair R. Fernie
Publié dans: Metabolomics, Numéro 15/4, 2019, ISSN 1573-3882
Éditeur: Springer Verlag
DOI: 10.1007/s11306-019-1503-8

Antidepressant-like effect of salidroside and curcumin on the immunoreactivity of rats subjected to a chronic mild stress model

Auteurs: Liliya V. Vasileva, Kremena E. Saracheva, Mariya V. Ivanovska, Atanaska P. Petrova, Andrey S. Marchev, Milen I. Georgiev, Mariana A. Murdjeva, Damiyanka P. Getova
Publié dans: Food and Chemical Toxicology, Numéro 121, 2018, Page(s) 604-611, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2018.09.065

Causes and solutions to “globesity”: The new fa(s)t alarming global epidemic

Auteurs: Liliya V. Vasileva, Andrey S. Marchev, Milen I. Georgiev
Publié dans: Food and Chemical Toxicology, Numéro 121, 2018, Page(s) 173-193, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2018.08.071

Data Reduction Approaches for Dissecting Transcriptional Effects on Metabolism

Auteurs: Kevin Schwahn, Zoran Nikoloski
Publié dans: Frontiers in Plant Science, Numéro 9, 2018, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.00538

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas

Auteurs: Fantao Kong, Adrien Burlacot, Yuanxue Liang, Bertrand Légeret, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie, Anja Krieger-Liszkay, Fred Beisson, Gilles Peltier, Yonghua Li-Beisson
Publié dans: The Plant Cell, Numéro 30/8, 2018, Page(s) 1824-1847, ISSN 1040-4651
Éditeur: American Society of Plant Biologists
DOI: 10.1105/tpc.18.00361

Passing the Baton: Substrate Channelling in Respiratory Metabolism

Auteurs: Alisdair R. Fernie, Youjun Zhang, Lee J. Sweetlove
Publié dans: Research, Numéro 2018, 2018, Page(s) 1-16, ISSN 2639-5274
Éditeur: American Association for the Advancement of Science
DOI: 10.1155/2018/1539325

In vivo detection of protein cysteine sulfenylation in plastids

Auteurs: Barbara De Smet, Patrick Willems, Alvaro D. Fernandez‐Fernandez, Saleh Alseekh, Alisdair R. Fernie, Joris Messens, Frank Van Breusegem
Publié dans: The Plant Journal, Numéro 97/4, 2019, Page(s) 765-778, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14146

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population

Auteurs: Yaacov Micha Brog, Sonia Osorio, Yoav Yichie, Saleh Alseekh, Elad Bensal, Andriy Kochevenko, Dani Zamir, Alisdair R. Fernie
Publié dans: The Plant Journal, Numéro 97/2, 2019, Page(s) 391-403, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14095

Clinopodium vulgare L. (wild basil) extract and its active constituents modulate cyclooxygenase-2 expression in neutrophils

Auteurs: Kristiana M. Amirova, Petya Dimitrova, Andrey S. Marchev, Ina Y. Aneva, Milen I. Georgiev
Publié dans: Food and Chemical Toxicology, Numéro 124, 2019, Page(s) 1-9, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2018.11.054

Crop metabolomics: from diagnostics to assisted breeding

Auteurs: Saleh Alseekh, Luisa Bermudez, Luis Alejandro de Haro, Alisdair R. Fernie, Fernando Carrari
Publié dans: Metabolomics, Numéro 14/11, 2018, ISSN 1573-3882
Éditeur: Springer Verlag
DOI: 10.1007/s11306-018-1446-5

Phytochemical composition and antioxidant activity of 63 Balkan pepper (Capsicum annuum L.) accessions

Auteurs: Petko Denev, Velichka Todorova, Manol Ognyanov, Yordan Georgiev, Irina Yanakieva, Ivanka Tringovska, Stanislava Grozeva, Dimitrina Kostova
Publié dans: Journal of Food Measurement and Characterization, 2019, ISSN 2193-4126
Éditeur: Springer Science + Business Media
DOI: 10.1007/s11694-019-00171-y

Immunoregulatory natural compounds in stress-induced depression: An alternative or an adjunct to conventional antidepressant therapy?

Auteurs: Liliya V. Vasileva, Mariya V. Ivanovska, Marianna A. Murdjeva, Kremena E. Saracheva, Milen I. Georgiev
Publié dans: Food and Chemical Toxicology, Numéro 127, 2019, Page(s) 81-88, ISSN 0278-6915
Éditeur: Elsevier BV
DOI: 10.1016/j.fct.2019.03.004

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Auteurs: Alexey Shapiguzov, Julia P Vainonen, Kerri Hunter, Helena Tossavainen, Arjun Tiwari, Sari Järvi, Maarit Hellman, Fayezeh Aarabi, Saleh Alseekh, Brecht Wybouw, Katrien Van Der Kelen, Lauri Nikkanen, Julia Krasensky-Wrzaczek, Nina Sipari, Markku Keinänen, Esa Tyystjärvi, Eevi Rintamäki, Bert De Rybel, Jarkko Salojärvi, Frank Van Breusegem, Alisdair R Fernie, Mikael Brosché, Perttu Permi, Eva-M
Publié dans: eLife, Numéro 8, 2019, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/elife.43284

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Auteurs: Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev
Publié dans: Cellular and Molecular Life Sciences, 2019, ISSN 1420-682X
Éditeur: Birkhauser Verlag
DOI: 10.1007/s00018-019-03202-5

COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors

Auteurs: Gita Naseri, Jessica Behrend, Lisa Rieper, Bernd Mueller-Roeber
Publié dans: Nature Communications, Numéro 10/1, 2019, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-019-10224-x

Application of high-throughput phenotyping tool Tomato Analyzer to characterize Balkan Capsicum fruit diversity

Auteurs: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Velichka Todorova, Dimitrina Kostova
Publié dans: Scientia Horticulturae, Numéro 260, 2020, Page(s) 108862, ISSN 0304-4238
Éditeur: Elsevier BV
DOI: 10.1016/j.scienta.2019.108862

Large‐scale metabolite quantitative trait locus analysis provides new insights for high‐quality maize improvement

Auteurs: Kun Li, Weiwei Wen, Saleh Alseekh, Xiaohong Yang, Huan Guo, Wenqiang Li, Luxi Wang, Qingchun Pan, Wei Zhan, Jie Liu, Yanhua Li, Xiao Wu, Yariv Brotman, Lothar Willmitzer, Jiansheng Li, Alisdair R. Fernie, Jianbing Yan
Publié dans: The Plant Journal, 2019, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14317

Extensive Variations in Diurnal Growth Patterns and Metabolism Among Ulva spp. Strains

Auteurs: Antoine Fort, Morgane Lebrault, Margot Allaire, Alberto A. Esteves-Ferreira, Marcus McHale, Francesca Lopez, Jose M. Fariñas-Franco, Saleh Alseekh, Alisdair R. Fernie, Ronan Sulpice
Publié dans: Plant Physiology, Numéro 180/1, 2019, Page(s) 109-123, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1104/pp.18.01513

Exploring the Diversity of Plant Metabolism

Auteurs: Chuanying Fang, Alisdair R. Fernie, Jie Luo
Publié dans: Trends in Plant Science, Numéro 24/1, 2019, Page(s) 83-98, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2018.09.006

MYB Transcription Repressors Regulate Plant Secondary Metabolism

Auteurs: Cheng Chen, Kaixuan Zhang, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Xinquan Zhang, Meiliang Zhou
Publié dans: Critical Reviews in Plant Sciences, Numéro 38/3, 2019, Page(s) 159-170, ISSN 0735-2689
Éditeur: Taylor & Francis
DOI: 10.1080/07352689.2019.1632542

Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize

Auteurs: Masaharu Suzuki, Shan Wu, Manaki Mimura, Saleh Alseekh, Alisdair R. Fernie, Andrew D. Hanson, Donald R. McCarty
Publié dans: The Plant Journal, 2019, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14535

The Structure and Function of Major Plant Metabolite Modifications

Auteurs: Shouchuang Wang, Saleh Alseekh, Alisdair R. Fernie, Jie Luo
Publié dans: Molecular Plant, Numéro 12/7, 2019, Page(s) 899-919, ISSN 1674-2052
Éditeur: Oxford University Press
DOI: 10.1016/j.molp.2019.06.001

Comparative metabolite profiling of two switchgrass ecotypes reveals differences in drought stress responses and rhizosheath weight

Auteurs: Tie-Yuan Liu, Mo-Xian Chen, Youjun Zhang, Fu-Yuan Zhu, Ying-Gao Liu, Yuan Tian, Alisdair R. Fernie, Nenghui Ye, Jianhua Zhang
Publié dans: Planta, Numéro 250/4, 2019, Page(s) 1355-1369, ISSN 0032-0935
Éditeur: Springer Verlag
DOI: 10.1007/s00425-019-03228-w

Redox-Regulation of Photorespiration through Mitochondrial Thioredoxin o1

Auteurs: Ole Reinholdt, Saskia Schwab, Youjun Zhang, Jean-Philippe Reichheld, Alisdair R. Fernie, Martin Hagemann, Stefan Timm
Publié dans: Plant Physiology, Numéro 181/2, 2019, Page(s) 442-457, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1104/pp.19.00559

Transposon-associated polymorphisms of stress-responsive gene promoters in natural variants of Arabidopsis thaliana

Auteurs: Mladen Naydenov, Nadezhda Gospodinova, Elena Apostolova, Nikolaj Anachkov, Vesselin Baev, Mariyana Gozmanova, Ivan Minkov, Galina Yahubyan
Publié dans: Acta Biochimica Polonica, Numéro 65/3, 2018, ISSN 0001-527X
Éditeur: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2017_1590

LoopRNA – Java Module for RNA Structure Annotation

Auteurs: Georgi Minkov, Valentina Toneva, Zdravka Ivanova, Vesselin Baev
Publié dans: Comptes rendus de l’Acade'mie bulgare des Sciences, Numéro Vol 71, No9, 2018, Page(s) 1215-1221, ISSN 1310-1331
Éditeur: "BAS publishing ""Prof.Malin Darinov"""
DOI: 10.7546/crabs.2018.09.08

A new liquid chromatography-high resolution Orbitrap mass spectrometry-based strategy to characterize Glucuronide Oleanane-type Triterpenoid Carboxylic Acid 3, 28-O-Bidesmosides (GOTCAB) saponins.A case study of Gypsophila glomerata Pall ex M. B. (Caryophyllaceae)

Auteurs: Reneta Gevrenova, Krum Bardarov, Sabine Bouguet-Bonnet, Yulian Voynikov, Vessela Balabanova, Dimitrina Zheleva-Dimitrova, Max Henry
Publié dans: Journal of Pharmaceutical and Biomedical Analysis, Numéro 159, 2018, Page(s) 567-581, ISSN 0731-7085
Éditeur: Elsevier BV
DOI: 10.1016/j.jpba.2018.07.041

Evaluation of collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb.

Auteurs: Katya Vasileva, Velichka Todorova, Stojka Masheva
Publié dans: Bulgarian Journal of Agricultural Science, Numéro 25 (No 5) 2019, 2019, Page(s) 1030-1038, ISSN 2534-983X
Éditeur: Agricultural Academy of Bulgaria

Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment

Auteurs: Yanni Dong, Saurabh Gupta, Rixta Sievers, Jason J. Wargent, David Wheeler, Joanna Putterill, Richard Macknight, Tsanko Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Publié dans: BMC Genomics, Numéro 20/1, 2019, ISSN 1471-2164
Éditeur: BioMed Central
DOI: 10.1186/s12864-019-6084-4

Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation

Auteurs: Mo-Xian Chen, Fu-Yuan Zhu, Bei Gao, Kai-Long Ma, Youjun Zhang, Alisdair R. Fernie, Xi Chen, Lei Dai, Neng-Hui Ye, Xue Zhang, Yuan Tian, Di Zhang, Shi Xiao, Jianhua Zhang, Ying-Gao Liu
Publié dans: Plant Physiology, 2019, Page(s) pp.00430.2019, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1104/pp.19.00430

Rapid High-Yield Transient Expression of Swine Hepatitis E ORF2 Capsid Proteins in Nicotiana benthamiana Plants and Production of Chimeric Hepatitis E Virus-Like Particles Bearing the M2e Influenza Epitope

Auteurs: Gergana G. Zahmanova, Milena Mazalovska, Katerina H. Takova, Valentina T. Toneva, Ivan N. Minkov, Eugenia S. Mardanova, Nikolai V. Ravin, George P. Lomonossoff
Publié dans: Plants, Numéro 9/1, 2020, Page(s) 29, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants9010029

Untargetted Metabolomic Exploration of the Mycobacterium tuberculosis Stress Response to Cinnamon Essential Oil

Auteurs: Elwira Sieniawska, Rafał Sawicki, Joanna Golus, Milen I. Georgiev
Publié dans: Biomolecules, Numéro 10/3, 2020, Page(s) 357, ISSN 2218-273X
Éditeur: MDPI
DOI: 10.3390/biom10030357

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

Auteurs: Mohammad Amin Omidbakhshfard, Neerakkal Sujeeth, Saurabh Gupta, Nooshin Omranian, Kieran J. Guinan, Yariv Brotman, Zoran Nikoloski, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko S. Gechev
Publié dans: International Journal of Molecular Sciences, Numéro 21/2, 2020, Page(s) 474, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
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Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping

Auteurs: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Daniela Ganeva, Dimitrina Kostova
Publié dans: Plants, Numéro 9/2, 2020, Page(s) 197, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants9020197

Molecular priming as an approach to induce tolerance against abiotic and oxidative stresses in crop plants

Auteurs: Pavel Kerchev, Tom van der Meer, Neerakkal Sujeeth, Arno Verlee, Christian V. Stevens, Frank Van Breusegem, Tsanko Gechev
Publié dans: Biotechnology Advances, 2019, Page(s) 107503, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107503

PC2P: parameter-free network-based prediction of protein complexes

Auteurs: Sara Omranian, Angela Angeleska, Zoran Nikoloski
Publié dans: Bioinformatics, 2021, ISSN 1367-4803
Éditeur: Oxford University Press
DOI: 10.1093/bioinformatics/btaa1089

Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

Auteurs: Hao Tonga, Zoran Nikoloski
Publié dans: Journal of Plant Physiology, 2021, ISSN 0176-1617
Éditeur: Elsevier BV
DOI: 10.1016/j.jplph.2020.153354

The style and substance of plant flavonoid decoration; towards defining both structure and function

Auteurs: Saleh Alseekh, Leonardo Perez de Souza, Maria Benina, Alisdair R. Fernie
Publié dans: Phytochemistry, Numéro 174, 2020, Page(s) 112347, ISSN 0031-9422
Éditeur: Elsevier BV
DOI: 10.1016/j.phytochem.2020.112347

Resolving the metabolon: is the proof in the metabolite?

Auteurs: Youjun Zhang, Alisdair R Fernie
Publié dans: EMBO reports, Numéro 21/8, 2020, ISSN 1469-221X
Éditeur: Nature Publishing Group
DOI: 10.15252/embr.202050774

Double Haploid Development and Assessment of Androgenic Competence of Balkan Pepper Core Collection in Bulgaria

Auteurs: Grozeva S., Pasev G., Radeva-Ivanova V., Todorova V., Ivanova V., Nankar A.N.
Publié dans: Plants, 2021, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants10112414

Rosmarinic acid - From bench to valuable applications in food industry

Auteurs: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Koycheva I.K., Balcheva-Sivenova Z.P., Vasileva S.M., Georgiev M.I.
Publié dans: Trends in Food Science & Technology, 2021, ISSN 0924-2244
Éditeur: Elsevier BV
DOI: 10.1016/j.tifs.2021.03.015

Plant Systems Biology in 2022 and Beyond

Auteurs: Gechev T., Petrov V.
Publié dans: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23084159

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

Auteurs: Weiyi Zhang, Youjun Zhang, Haiji Qiu, Yafei Guo, Haoliang Wan, Xiaoliang Zhang, Federico Scossa, Saleh Alseekh, Qinghua Zhang, Pu Wang, Li Xu, Maximilian H-W Schmidt, Xinxin Jia, Daili Li, Anting Zhu, Fei Guo, Wei Chen, Dejiang Ni, Björn Usadel, Alisdair R. Fernie, Weiwei Wen
Publié dans: Nature Communications, Numéro 11/1, 2020, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-020-17498-6

The Bacillus subtilis glutamate anti-metabolon

Auteurs: Fernie A.R., Zhang Y.
Publié dans: Nature Metabolism, 2022, ISSN 2522-5812
Éditeur: Springer Nature
DOI: 10.1038/s42255-022-00534-8

Auxin boosts energy generation pathways to fuel pollen maturation in barley

Auteurs: Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura ., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F.
Publié dans: Current Biology, 2022, ISSN 0960-9822
Éditeur: Cell Press
DOI: 10.1016/j.cub.2022.02.073

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains

Auteurs: Amol N. Nankar, M Paul Scott, Richard C. Pratt
Publié dans: Plants, Numéro 9/12, 2020, Page(s) 1775, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants9121775

Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.

Auteurs: Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R.
Publié dans: Plant Cell Reports, 2022, ISSN 0721-7714
Éditeur: Springer Verlag
DOI: 10.1007/s00299-022-02831-8

Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes

Auteurs: Nasser Sewelam, Dominik Brilhaus, Andrea Bräutigam, Saleh Alseekh, Alisdair R Fernie, Veronica G Maurino
Publié dans: Journal of Experimental Botany, Numéro 71/16, 2020, Page(s) 5098-5112, ISSN 0022-0957
Éditeur: Oxford University Press
DOI: 10.1093/jxb/eraa250

The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants

Auteurs: Chen Jiao, Iben Sørensen, Xuepeng Sun, Honghe Sun, Hila Behar, Saleh Alseekh, Glenn Philippe, Kattia Palacio Lopez, Li Sun, Reagan Reed, Susan Jeon, Reiko Kiyonami, Sheng Zhang, Alisdair R. Fernie, Harry Brumer, David S. Domozych, Zhangjun Fei, Jocelyn K.C. Rose
Publié dans: Cell, Numéro 181/5, 2020, Page(s) 1097-1111.e12, ISSN 0092-8674
Éditeur: Cell Press
DOI: 10.1016/j.cell.2020.04.019

Ziziphus jujuba Mill. leaf extract restrains adipogenesis by targeting PI3K/AKT signaling pathway

Auteurs: Martina S.Savova, Liliya V.Vasileva, Saveta G.Mladenova, Kristiana M.Amirova, Claudio Ferrante, Giustino Orlando, Martin Wabitsche, Milen I.Georgiev
Publié dans: Biomedicine & Pharmacotherapy, 2021, ISSN 0753-3322
Éditeur: Elsevier Masson
DOI: 10.1016/j.biopha.2021.111934

Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis

Auteurs: Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber, B, Meskiene I., Schweighofer A.
Publié dans: Journal of Experimental Botany, 2022, ISSN 0022-0957
Éditeur: Oxford University Press
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Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein

Auteurs: Duarte G. T., Pandey P. K., Vaid N., Alseekh S., Fernie A.R., Nikoloski Z., Laitinen. R.
Publié dans: Plant cell and environment, 2021, ISSN 1365-3040
Éditeur: Wiley
DOI: 10.1111/pce.14146

Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant

Auteurs: Alexey Shapiguzov, Lauri Nikkanen, Duncan Fitzpatrick, Julia P. Vainonen, Richard Gossens, Saleh Alseekh, Fayezeh Aarabi, Arjun Tiwari, Olga Blokhina, Klára Panzarová, Zuzana Benedikty, Esa Tyystjärvi, Alisdair R. Fernie, Martin Trtílek, Eva-Mari Aro, Eevi Rintamäki, Jaakko Kangasjärvi
Publié dans: Philosophical Transactions of the Royal Society B: Biological Sciences, Numéro 375/1801, 2020, Page(s) 20190413, ISSN 0962-8436
Éditeur: Royal Society of London
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Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Auteurs: Alexander A. Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L. F. Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N. Maloney, Biswapriya B. Misra, Alexey V. Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L. Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J. J. van der Hooft, Mabel Gonzalez, Chiara Carazzone,
Publié dans: Nature Biotechnology, Numéro 39/2, 2021, Page(s) 169-173, ISSN 1087-0156
Éditeur: Nature Publishing Group
DOI: 10.1038/s41587-020-0700-3

When a Crop Goes Back to the Wild: Feralization

Auteurs: Federico Scossa, Alisdair R. Fernie
Publié dans: Trends in Plant Science, 2021, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.002

Efficient Production of Chimeric Hepatitis B Virus-Like Particles Bearing an Epitope of Hepatitis E Virus Capsid by Transient Expression in Nicotiana benthamiana

Auteurs: Gergana Zahmanova, Milena Mazalovska, Katerina Takova, Valentina Toneva, Ivan Minkov, Hadrien Peyret and George Lomonossoff
Publié dans: Life, 2021, ISSN 2075-1729
Éditeur: MDPI
DOI: 10.3390/life11010064

Natural Genetic Diversity in Tomato Flavor Genes

Auteurs: Pereira L., Sapkota M., Alonge M., Zheng Y., Zhang Y., Razifard H., Taitano N.K., Schatz M., Lipman Z., Fernie A.R., Wang Y, Fei Z, Caicedo A.L., Tieman D.M., Knaap E.
Publié dans: Frontiers in Plant Science, 2021, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.642828

Evaluation a collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb

Auteurs: 77. Vasileva K, Todorova V, Masheva S.
Publié dans: Bulgarian Journal of Agricultural Science 25(3), 2019, Page(s) 415-420, ISSN 1310-0351
Éditeur: Agricultural Academy
DOI: 10.5281/zenodo.3692692

Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa.

Auteurs: Gutsch A., Hendrix S., Guerriero G., Renaut J., Lutts S., Alseekh S., Fernie A.R., Hausman J.F., Vangronsveld J., Cuypers A., Sergeant K.
Publié dans: Cells, 2021, ISSN 2073-4409
Éditeur: MDPI
DOI: 10.3390/cells9122707

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Auteurs: Cortinovis G., Oppermann M., Neumann K., Graner A., Gioia T., Marsella M., Alseekh S., Fernie A.R., Papa R., Bellucci E., Bitocchi E.
Publié dans: Current protocols., 2021, ISSN 2691-1299
Éditeur: Wiley
DOI: 10.1002/cpz1.133

Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability

Auteurs: Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M.
Publié dans: Plant Physiology, 2022, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac162

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Auteurs: Alseekh S., Aharoni A., Brotman Y., Contrepois K., D’Auria ., Ewald C. ., Ewald ., Fraser P.D., Giavalisco P., Hall R.D., Heinemann M., Link H., Luo J., Neumann S., Nielsen J., Leonardo Souza P., Saito K., Sauer U., Schroeder C.F., Schuster S., Siuzdak, G., Skirycz A., Sumner W.L., Snyder P.M., Tang H., Tohge T., Wang Y., Wen W., Wu S., Xu G., Nicola Zamboni N., R. Fernie A.R.
Publié dans: Nature Methods, 2021, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/s41592-021-01197-1

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits

Auteurs: Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, Dimitrina Kostova
Publié dans: PLOS ONE, Numéro 15/8, 2020, Page(s) e0237741, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0237741

Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

Auteurs: Aarabi F., Rakpenthai A., Barahimipour R., Gorka M., Alseekh S., Zhang Y., Salem M. A., Brückner F., Omranian N., Watanabe M., Nikoloski Z., Giavalisco P., Tohge T., Graf A., Fernie A.R., Hoefgen R.
Publié dans: Plant Physiology, 2021, ISSN 0032-0889
Éditeur: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab386

Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues

Auteurs: Alisdair R. Fernie, Youjun Zhang, Arun Sampathkumar
Publié dans: Trends in Biochemical Sciences, Numéro 45/8, 2020, Page(s) 637-638, ISSN 0968-0004
Éditeur: Elsevier BV
DOI: 10.1016/j.tibs.2020.04.003

Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein

Auteurs: Jung J-W., Zahmanova G., Minkov I., Lomonossoff G.P.
Publié dans: Plant Biotechnolgy Journal, 2022, ISSN 1467-7644
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/pbi.13813

Comparative Molecular and Metabolic Profiling of Two Contrasting Wheat Cultivars under Drought Stress

Auteurs: Fadoul H.E, Martínez Rivas F. , Neumann K., Balazadeh S., Fernie A.R., Alseekh S.
Publié dans: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413287

Ubiquitin proteins and the orchestration of transcription factors activity.

Auteurs: He Y., Zhang K., Georgiev M.I.
Publié dans: Critical Reviews in Plant Sciences, 2021, ISSN 0735-2689
Éditeur: Taylor & Francis
DOI: 10.1080/07352689.2021.1951491

A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses

Auteurs: Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C., Alseekh S., Fernie A.R., Hanson A.D., McCarty D.R.
Publié dans: Metabolites, 2021, ISSN 2218-1989
Éditeur: MDPI
DOI: 10.3390/metabo11110797

Plant metabolism paves the way for breeding crops with high nutritional value and stable yield

Auteurs: Jin C., Fang C., Zhang Y., Fernie A.R., Luo J.
Publié dans: Science China Life Sciences, 2021, ISSN 1674-7305
Éditeur: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2004-0

JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat

Auteurs: Ding M., He Y., Zhang K., Li J., Shi Y., Zhao M., Meng Y., Georgiev M.I., Zhou M.
Publié dans: The Plant Journal, 2022, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15800

From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants

Auteurs: Kerbler M. S., Natale R., Fernie A.R., Zhang Y.
Publié dans: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22137101

Conservation and diversification of flavonoid metabolism in the plant kingdom

Auteurs: Weiwei Wen, Saleh Alseekh, Alisdair R Fernie
Publié dans: Current Opinion in Plant Biology, Numéro 55, 2020, Page(s) 100-108, ISSN 1369-5266
Éditeur: Elsevier BV
DOI: 10.1016/j.pbi.2020.04.004

Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance

Auteurs: Muhammad B. Faisal, Tsanko S. Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Publié dans: BMC Plant Biology, Numéro 20/1, 2020, ISSN 1471-2229
Éditeur: BioMed Central
DOI: 10.1186/s12870-020-02485-2

The Multiverse of Plant Small RNAs: How Can We Explore It?

Auteurs: Ivanova Z., Minkov G., Gisel A., Yahubyan G., Minkov I., Toneva V., Baev V.
Publié dans: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23073979

Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment

Auteurs: Rane R.N., Tapase S., Kanojia A., Watharkar A., Salama E., Jang M., Yadav K., Amin A.M., Pinto M.S., Cabral-Pinto, Jadhav P.J., Byong-Hun J.
Publié dans: Bioresource Technology, 2022, ISSN 0960-8524
Éditeur: Elsevier BV
DOI: 10.1016/j.biortech.2021.126246

Strategic enhancement of genetic gain for nutraceutical development in buckwheat: A genomics-driven perspective

Auteurs: Dinesh C. Joshi, Kaixuan Zhang, Chenglong Wang, Rahul Chandora, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Meiliang Zhou
Publié dans: Biotechnology Advances, Numéro 39, 2020, Page(s) 107479, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107479

Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA

Auteurs: Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli, E., Martin C.
Publié dans: Metabolic Engineering, 2021, ISSN 2352-3409
Éditeur: Elsevier BV
DOI: 10.1016/j.dib.2020.106678

Annual Plant Reviews online

Auteurs: 21. Lyall R., Gechev T.
Publié dans: Annual Plant Reviews online 2020 Volume 3, 2018, ISBN 9781119312994
Éditeur: Wiley
DOI: 10.1002/9781119312994.apr0730

Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry

Auteurs: Cindy Llorente, Rosario Jimenez, Jackie, Yariv Brotman, Alisdair R. Fernie, Nese Sreenivasulu
Publié dans: Rice Grain Quality - Methods and Protocols, Numéro 1892, 2019, Page(s) 187-199, ISBN 978-1-4939-8912-6
Éditeur: Springer New York
DOI: 10.1007/978-1-4939-8914-0_11

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance

Auteurs: Saleh Alseekh, Si Wu, Yariv Brotman, Alisdair R. Fernie
Publié dans: Plant Metabolomics, Numéro 1778, 2018, Page(s) 33-46, ISBN 978-1-4939-7818-2
Éditeur: Springer New York
DOI: 10.1007/978-1-4939-7819-9_3

Metabolomic Analysis of Natural Variation in Arabidopsis

Auteurs: Si Wu, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie
Publié dans: Arabidopsis Protocols, Numéro 2200, 2021, Page(s) 393-411, ISBN 978-1-0716-0879-1
Éditeur: Springer US
DOI: 10.1007/978-1-0716-0880-7_19

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ХРАНИТЕЛНА СРЕДА ЗА IN VITRO РАЗМНОЖАВАНЕ НА РАСТЕНИЯ ОТ ВИДA HABERLEA RHODOPENSIS FRIV.

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