Establishment of a Center of Plant Systems Biology and Biotechnology for the translation of fundamental research into sustainable bio-based technologies in Bulgaria

Risultati finali

E-newsletter 2

E-newsletter

New video clip
E-newsletter 4

Enewsletter

Updated project leaflet
E-newsletter 3

Enewsletter

CPSBB Website

CPSBB Website established

E-newsletter 1

E-newsletter

Pubblicazioni

Reactive Oxygen Species and Abiotic Stress in Plants

Autori: Tsanko Gechev, Veselin Petrov
Pubblicato in: International Journal of Molecular Sciences, Numero 21/20, 2020, Pagina/e 7433, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21207433

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

Autori: Youjun Zhang, Ina Krahnert, Antje Bolze, Yves Gibon, Alisdair R. Fernie
Pubblicato in: Current Protocols in Plant Biology, Numero 5/3, 2020, ISSN 2379-8068
Editore: Wiley
DOI: 10.1002/cppb.20115

Bringing more players into play: Leveraging stress in genome wide association studies

Autori: Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R.
Pubblicato in: Journal of Plant Physiology, 2022, ISSN 0176-1617
Editore: Elsevier BV
DOI: 10.1016/j.jplph.2022.153657

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice

Autori: Wang, J.Y., Alseekh, S., Xiao, T. et al.
Pubblicato in: Communications Biology, 2021, ISSN 2399-3642
Editore: Communications Biology
DOI: 10.1038/s42003-021-02740-8

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism

Autori: Sandra E Zimmermann, Ruben M Benstein, María Flores-Tornero, Samira Blau, Armand D Anoman, Sara Rosa-Téllez, Silke C Gerlich, Mohamed A Salem, Saleh Alseekh, Stanislav Kopriva
Pubblicato in: Plant Physiology, 2021, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab167

Metabolons, enzyme–enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Autori: Youjun Zhang, Alisdair R. Fernie
Pubblicato in: Plant Communications, Numero 2/1, 2021, Pagina/e 100081, ISSN 2590-3462
Editore: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100081

Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants?

Autori: Federico Scossa, Alisdair R.Fernie
Pubblicato in: Computational and Structural Biotechnology Journal, 2021, ISSN 2001-0370
Editore: Elsevier
DOI: 10.1016/j.csbj.2021.03.008

Anthocyanins, multi-functional natural products of industrial relevance: Recent biotechnological advances

Autori: Tarun Belwal, Gopal Singh, Philippe Jeandet, Aseesh Pandey, Lalit Giri, Sudipta Ramola, Indra D. Bhatt, Petras Rimantas Venskutonis, Milen I. Georgiev, Christophe Clément, Zisheng Luo
Pubblicato in: Biotechnology Advances, Numero 43, 2020, Pagina/e 107600, ISSN 0734-9750
Editore: Elsevier BV
DOI: 10.1016/j.biotechadv.2020.107600

Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1)

Autori: Timm, S., Klaas, N., Niemann, J., Jahnke, K., Alseekh, S., Zhang, Y., Souza, P. V., Hou, L.-Y., Geigenberger, P., Daloso, D. M
Pubblicato in: bioRxiv, 2022, ISSN 2692-8205
Editore: bioRxiv
DOI: 10.1101/2022.04.02.486831

Antiobesity molecules of natural origin: Call for lead finding acceleration

Autori: Georgiev M.I., Vasileva L.V., Savova M.S.
Pubblicato in: Food Frontiers, 2021, ISSN 2643-8429
Editore: Wiley
DOI: 10.1002/fft2.59

Screening of pepper (Capsicum spp.) accessions for infestation by pests in open field conditions.

Autori: 47. Yankova V., Todorova V., Markova D.
Pubblicato in: Bulgarian Journal of Agricultural Science. 26 (4), 2020, Pagina/e 841-846, ISSN 1310-0351
Editore: Agricultural Academy
DOI: 10.5281/zenodo.4706815

An Abundance and Interaction Encyclopedia of Plant Protein Function

Autori: Youjun Zhang, Aleksandra Skirycz, Alisdair R. Fernie
Pubblicato in: Trends in Plant Science, Numero 25/7, 2020, Pagina/e 627-630, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.006

Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming

Autori: Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R.
Pubblicato in: Autophagy, 2022, ISSN 1554-8627
Editore: Landes Bioscience
DOI: 10.1080/15548627.2021.2003041

Priming with a Seaweed Extract Strongly Improves Drought Tolerance in Arabidopsis

Autori: Fiaz Rasul, Saurabh Gupta, Justyna Jadwiga Olas, Tsanko Gechev, Neerakkal Sujeeth and Bernd Mueller-Roeber
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22031469

A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator

Autori: Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R.
Pubblicato in: Plant Physiology, 2022, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac200

On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins

Autori: Youjun Zhang, Alisdair R. Fernie
Pubblicato in: Biomolecules, Numero 10/8, 2020, Pagina/e 1107, ISSN 2218-273X
Editore: MDPI
DOI: 10.3390/biom10081107

Natural products in drug discovery: advances and opportunities

Autori: Atanasov A.G., Zotchev S.B., Dirsch V.M., Orhan I.E., Banach M., Rollinger J.M., Barreca D., Weckwerth W., Bauer R., Bayer E.A., Majeed M., Bishayee A., Bochkov V., Bonn G.K., Braidy N., Bucar F., Cifuentes A., D’Onofrio G., Bodkin M., Diederich M., Dinkova-Kostova A.T., Efferth T., El Bairi K., Arkells N., Fan T-P., Fiebich B.L., Freissmuth M., Georgiev M.I. et al.
Pubblicato in: Nature Reviews in Drug Discovery, 2021, ISSN 1474-1776
Editore: Nature Publishing Group
DOI: 10.1038/s41573-020-00114-z

The Transcriptional Corepressor HOS15 Mediates Dark-Induced Leaf Senescence in Arabidopsis

Autori: Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J.
Pubblicato in: Frontiers in Plant Science, 2022, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.828264

Analysis of the complete mitochondrial genome sequence of the resurrection plant Haberlea rhodopensis

Autori: Baev V., Ivanova Z., Yahubyan G., Toneva V., Apostolova E., Minkov G., Minkov I.
Pubblicato in: Acta Biochimica Polonica, 2021, ISSN 0001-527X
Editore: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2020_5555

Rapid Identification of Protein‐Protein Interactions in Plants

Autori: Youjun Zhang, Roberto Natale, Adilson Pereira Domingues, Mitchell Rey Toleco, Beata Siemiatkowska, Norma Fàbregas, Alisdair R. Fernie
Pubblicato in: Current Protocols in Plant Biology, Numero 4/4, 2019, ISSN 2379-8068
Editore: Wiley
DOI: 10.1002/cppb.20099

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Autori: Prashant K. Pandey, Jing Yu, Nooshin Omranian, Saleh Alseekh, Neha Vaid, Alisdair R. Fernie, Zoran Nikoloski, Roosa A. E. Laitinen
Pubblicato in: Plant Direct, Numero 3/11, 2019, ISSN 2475-4455
Editore: Wiley
DOI: 10.1002/pld3.186

Obesity and NRF2-mediated cytoprotection: Where is the missing link?

Autori: Liliya V. Vasileva, Martina S. Savova, Kristiana M. Amirova, Albena T. Dinkova-Kostova, Milen I. Georgiev
Pubblicato in: Pharmacological Research, Numero 156, 2020, Pagina/e 104760, ISSN 1043-6618
Editore: Academic Press
DOI: 10.1016/j.phrs.2020.104760

Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion

Autori: Jinbo Li, Yu Meng, Kaixuan Zhang, Qiong Li, Shijuan Li, Bingliang Xu, Milen I Georgiev, Meiliang Zhou
Pubblicato in: Plant Physiology, Numero 185/2, 2020, Pagina/e 369-384, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa043

Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

Autori: Leonardo Perez De Souza, Saleh Alseekh, Yariv Brotman, Alisdair R Fernie
Pubblicato in: Expert Review of Proteomics, Numero 17/4, 2020, Pagina/e 243-255, ISSN 1478-9450
Editore: Future Drugs Ltd.
DOI: 10.1080/14789450.2020.1766975

Genome-wide association studies: assessing trait characteristics in model and crop plants.

Autori: Alseekh S., Kostova D., Mustafa B., Fernie A.R.
Pubblicato in: Cellular and Molecular Life Sciences, Numero 1420682X, 2021, ISSN 1420-682X
Editore: Birkhauser Verlag
DOI: 10.1007/s00018-021-03868-w

The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.

Autori: Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M.
Pubblicato in: Scientific Report, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-04433-y

Stable and Temporary Enzyme Complexes and Metabolons Involved in Energy and Redox Metabolism

Autori: Youjun Zhang, Alisdair R. Fernie
Pubblicato in: Antioxidants & Redox Signaling, 2020, ISSN 1523-0864
Editore: Mary Ann Liebert Inc.
DOI: 10.1089/ars.2019.7981

Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change?

Autori: Jorge T. F., Ramalho J. C., Alseekh S., Pais I. P., Leitão A. E., Rodrigues A. P., Scotti-Campos P., Ribeiro-Barros A. I., Fernie A. R., António C.
Pubblicato in: Metabolites, 2021, ISSN 2218-1989
Editore: MDPI
DOI: 10.3390/metabo11090593

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity

Autori: Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B
Pubblicato in: The Plant Journal, 2022, ISSN 1365-313X
Editore: Wiley
DOI: 10.1111/tpj.15770

A. thaliana Hybrids Develop Growth Abnormalities through Integration of Stress, Hormone and Growth Signaling

Autori: Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE.
Pubblicato in: Plant Cell Physiology, 2022, ISSN 1471-9053
Editore: Japanese Society of Plant Physiologists
DOI: 10.1093/pcp/pcac056

Systems biology of resurrection plants

Autori: Gechev T., Lyall R., Petrov V., Bartels D.
Pubblicato in: Cellular and Molecular Life Sciences, 2021, ISSN 1420-9071
Editore: Springer
DOI: 10.1007/s00018-021-03913-8

Rice metabolic regulatory network spanning the entire life cycle

Autori: Chenkun Yang, Shuangqian Shen, Alisdair R.Fernie, JieLuo
Pubblicato in: Molecular Plant, 2021, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2021.10.005

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water‐deficit stress

Autori: Mohamed A. Salem, Takuya Yoshida, Leonardo Perez de Souza, Saleh Alseekh, Krzysztof Bajdzienko, Alisdair R. Fernie, Patrick Giavalisco
Pubblicato in: The Plant Journal, Numero 103/4, 2020, Pagina/e 1614-1632, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14800

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism

Autori: Moreno JC, Rojas BE, Vicente R, Gorka M, Matz T, Chodasiewicz M, Peralta-Ariza JS, Zhang Y, Alseekh S, Childs D, Luzarowski M, Nikoloski Z, Zarivach R, Walther D, Hartman MD, Figueroa CM, Iglesias AA, Fernie AR, Skirycz A.
Pubblicato in: The EMBO Jurnal, 2021, ISSN 1460-2075
Editore: EMBO Press
DOI: 10.15252/embj.2020106800

Metabolomics: towards acceleration of antibacterial plant-based leads discovery

Autori: Sieniawska, E., Georgiev, M.I.
Pubblicato in: Phytochemistry Reviews, 2021, ISSN 1568-7767
Editore: Kluwer Academic Publishers
DOI: 10.1007/s11101-021-09762-4

Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation

Autori: He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M.
Pubblicato in: New Phytologist, 2022, ISSN 1469-8137
Editore: Wiley
DOI: 10.1111/nph.18306

Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Autori: Hao Tong, Anika Küken, Zoran Nikoloski
Pubblicato in: Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-16279-5

Network Analysis Provides Insight into Tomato Lipid Metabolism

Autori: Anastasiya Kuhalskaya, Micha Wijesingha Ahchige, Leonardo Perez de Souza, José Vallarino, Yariv Brotman, Saleh Alseekh
Pubblicato in: Metabolites, Numero 10/4, 2020, Pagina/e 152, ISSN 2218-1989
Editore: MDPI
DOI: 10.3390/metabo10040152

Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process

Autori: Martínez-Rivas FJ, Blanco-Portales R, Moyano E, Alseekh S, Caballero JL, Schwab W, Fernie AR, Muñoz-Blanco J, Molina-Hidalgo FJ
Pubblicato in: Horticulture Research, 2022, ISSN 2052-7276
Editore: Oxford Academic
DOI: 10.1093/hr/uhac095

Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles

Autori: Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M.
Pubblicato in: Antioxidants, 2022, ISSN 2076-3921
Editore: MDPI
DOI: 10.3390/antiox11030462

Plant cell cultures as heterologous bio-factories for secondary metabolite production

Autori: Tong Wu, Sandra M.Kerbler, Alisdair R.Fernie, YoujunZhang
Pubblicato in: Plant Communications, 2021, ISSN 2590-3462
Editore: Elsevier Inc.
DOI: 10.1016/j.xplc.2021.100235

Metabolomic selection–based machine learning improves fruit taste prediction

Autori: Fernie A.R., Alseekh S.
Pubblicato in: Proceedings of the National Academy of Sciences of the United States of America, 2022, ISSN 1091-6490
Editore: National Academy of Science
DOI: 10.1073/pnas.2201078119

Development and Optimization of an Enzyme Immunoassay to Detect Serum Antibodies against the Hepatitis E Virus in Pigs, Using Plant-Derived ORF2 Recombinant Protein

Autori: Katerina Takova, Tsvetoslav Koynarski, George Minkov, Valentina Toneva, Eugenia Mardanova, Nikolai Ravin, Georgi L. Lukov and Gergana Zahmanova
Pubblicato in: Plant Based Vaccines—A Powerhouse for Global Health 2.0, 2021, ISSN 2076-393X
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines9090991

Genotyping by Sequencing Reveals Genetic Relatedness of Southwestern U.S. Blue Maize Landraces

Autori: Nankar A.N., Pratt R.C.
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22073436

Creation of pepper doubled haploids and morphological characterization of androgenic plants

Autori: Grozeva S., Todorova V., Nankar A.N.
Pubblicato in: Euphytica, 2021, ISSN 0014-2336
Editore: Kluwer Academic Publishers
DOI: 10.1007/s10681-021-02840-w

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

Autori: Eugenia S. Mardanova, Katerina H. Takova, Valentina T. Toneva, Gergana G. Zahmanova, Liudmila M. Tsybalova, Nikolai V. Ravin
Pubblicato in: Biotechnology Letters, Numero 42/11, 2020, Pagina/e 2441-2446, ISSN 0141-5492
Editore: Kluwer Academic Publishers
DOI: 10.1007/s10529-020-02995-x

Biotechnologically Produced Lavandula angustifolia Mill. Extract Rich in Rosmarinic Acid Resolves Psoriasis-Related Inflammation Through Janus Kinase/Signal Transducer and Activator of Transcription Signaling

Autori: Koycheva I.K., Vasileva L.V., Amirova K.M., Marchev A.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Pubblicato in: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Editore: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.680168

The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids

Autori: Youjun Zhang, Federico Scossa, Alisdair R. Fernie
Pubblicato in: Molecular Plant, 2021, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2021.08.017

Integrating multi-omics data for crop improvement

Autori: Federico Scossa, Saleh Alseekha, Alisdair R.Fernie
Pubblicato in: Journal of Plant Physiology, 2021, ISSN 0176-1617
Editore: Elsevier BV
DOI: 10.1016/j.jplph.2020.153352

Unravelling the molecular networks that regulate kiwifruit flavor

Autori: Fernie A.R., Alseekh S.
Pubblicato in: New Phytologist, 2021, ISSN 1469-8137
Editore: Wiley
DOI: 10.1111/nph.17740

Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects

Autori: Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M.
Pubblicato in: Food Reviews International, 2022, ISSN 8755-9129
Editore: Marcel Dekker Inc.
DOI: 10.1080/87559129.2022.2067175

Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes

Autori: Rafe Lyall, Zoran Nikoloski, Tsanko Gechev
Pubblicato in: International Journal of Molecular Sciences, Numero 21/23, 2020, Pagina/e 9131, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21239131

Pod indehiscence in common bean is associated with the fine regulation of PvMYB26

Autori: Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D., Papa R.
Pubblicato in: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/eraa553

Regulation of alternative splicing in response to temperature variation in plants

Autori: Sheeba John, Justyna Jadwiga Olas, Bernd Mueller Roeber
Pubblicato in: Journal of Experimental Botany, Numero 72(18), 2021, Pagina/e 6150-6163, ISSN 1460-2431
Editore: Society for Experimental Biology
DOI: 10.1093/jxb/erab232

A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles

Autori: Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M.
Pubblicato in: Frontiers in Pharmacology, 2022, ISSN 1663-9812
Editore: Frontiers Media S.A.
DOI: 10.3389/fphar.2022.840478

The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe

Autori: Mohamed A.Salem, Ahmed Zayed, Saleh Alseekh, Alisdair R.Fernie, Patrick Giavalisco
Pubblicato in: Phytochemistry, 2021, ISSN 0031-9422
Editore: Elsevier BV
DOI: 10.1016/j.phytochem.2021.112843

A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species

Autori: Youjun Zhang, Moxian Chen, Beata Siemiatkowska, Mitchell Rey Toleco, Yue Jing, Vivien Strotmann, Jianghua Zhang, Yvonne Stahl, Alisdair R. Fernie
Pubblicato in: Plant Communications, Numero 1/5, 2020, Pagina/e 100028, ISSN 2590-3462
Editore: Elsevier B.V.
DOI: 10.1016/j.xplc.2020.100028

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research

Autori: Perez de Souza L., Alseekh S., Scossa F., Fernie A.R.
Pubblicato in: Nature Methods, 2021, ISSN 1548-7091
Editore: Nature Publishing Group
DOI: 10.1038/s41592-021-01116-4

Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids

Autori: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Balcheva-Sivenova Z.P., Georgiev M.I.
Pubblicato in: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Editore: Birkhauser Verlag
DOI: 10.1007/s00018-021-03918-3

An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress

Autori: Nikola S. Staykov, Mihail Angelov, Veselin Petrov, Pavel Minkov, Aakansha Kanojia, Kieran J. Guinan, Saleh Alseekh, Alisdair R. Fernie, Neerakkal Sujeeth and Tsanko S. Gechev
Pubblicato in: Metabolomics in Agriculture Volume 2, 2021, ISSN 2218-1989
Editore: MDPI
DOI: 10.3390/metabo11010024

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits

Autori: Yi Ren, Maoying Li, Shaogui Guo, Honghe Sun, Jianyu Zhao, Jie Zhang, Guangmin Liu, Hongju He, Shouwei Tian, Yongtao Yu, Guoyi Gong, Haiying Zhang, Xiaolan Zhang, Saleh Alseekh, Alisdair R Fernie, Henrik V Scheller, Yong Xu
Pubblicato in: The Plant Cell, 2021, ISSN 1040-4651
Editore: American Society of Plant Biologists
DOI: 10.1093/plcell/koab055

Biotechnological Exploration of Transformed Root Culture for Value-Added Products

Autori: Min Shi, Pan Liao, Shivraj Hariram Nile, Milen I. Georgiev, Guoyin Kai
Pubblicato in: Trends in Biotechnology, Numero 39/2, 2021, Pagina/e 137-149, ISSN 0167-7799
Editore: Elsevier BV
DOI: 10.1016/j.tibtech.2020.06.012

Multiomics analyses reveal the roles of the ASR1 transcription factor in tomato fruits

Autori: Dominguez P.G., Conti G., Duffy T., Insani M., Alseekh S., Asurmendi S., Fernie A.R., Carrari F.
Pubblicato in: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/erab269

FtBPM3 modulates the orchestration of FtMYB11-mediated flavonoids biosynthesis in Tartary buckwheat

Autori: Ding M., Zhang K., He Y., Zuo Q., Zhao H., He M., Georgiev M.I., Park S.U., Zhou M.
Pubblicato in: Plant Biotechnology Journal, 2021, ISSN 1467-7652
Editore: Wiley
DOI: 10.1111/pbi.13587

Tanshinones from Salvia miltiorrhiza inhibit Mycobacterium tuberculosis via disruption of the cell envelope surface and oxidative stress

Autori: Elwira Sieniawska, Rafal Sawicki, Andrey S.Marchev, Wieslaw Truszkiewicz, Milen I.Georgiev
Pubblicato in: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2021.112405

Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism

Autori: M. Toleco, Thomas Naake, Youjun Zhang, Joshua Heazlewood, Alisdair R. Fernie
Pubblicato in: Plants, Numero 9/1, 2020, Pagina/e 117, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants9010117

Using Metabolomics to Assist Plant Breeding.

Autori: Alseekh S., Fernie A.R.
Pubblicato in: Methods in Molecular Biology, 2021, ISSN 1064-3745
Editore: Humana Press, Inc.
DOI: 10.1007/978-1-0716-1201-9_3

Large-scale multi-omics genome-wide association studies (Mo-GWAS): guidelines for sample preparation and normalization

Autori: Bulut M., Fernie A.R., Alseekh S.
Pubblicato in: Jove-Journal of Visualized Experiments, 2021, ISSN 1940-087X
Editore: MYJoVE Corporation
DOI: 10.3791/62732

Biotechnologically-Produced Myconoside and Calceolarioside E Induce Nrf2 Expression in Neutrophils

Autori: Amirova K.M., Dimitrova P.A., Marchev A.S., Krustanova S., Simova S., Alipieva K., Georgiev M.I.
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22041759

Leucosceptoside A from Devil’s Claw Modulates Psoriasis-like Inflammation via Suppression of the PI3K/AKT Signaling Pathway in Keratinocytes

Autori: Koycheva I.K., Mihaylova L.V., Todorova M.N., Balcheva-Sivenova Z.P., Alipieva K., Ferrante C., Orlando G., Georgiev M.I.
Pubblicato in: Molecules, 2021, ISSN 1420-3049
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26227014

Plant-Derived Recombinant Vaccines against Zoonotic Viruses

Autori: Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L.
Pubblicato in: Life, 2022, ISSN 2075-1729
Editore: MDPI
DOI: 10.3390/life12020156

Using precision phenotyping to inform de novo domestication

Autori: Fernie A.R., Alseekh S., Liu J., Yan J.
Pubblicato in: Plant Phisiology, 2021, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab160

MicroRNA-Mediated Metabolic Reprograming in Renal Cancer

Autori: Bogusławska, Popławski, Alseekh, Koblowska, Iwanicka-Nowicka, Rybicka, Kędzierska, Głuchowska, Hanusek, Tański, Fernie, Piekiełko-Witkowska
Pubblicato in: Cancers, Numero 11/12, 2019, Pagina/e 1825, ISSN 2072-6694
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers11121825

First report of tomato spotted wilt virus on lisianthus (Eustoma grandiflorum) in Bulgaria

Autori: Gancho Pasev, Vesela Radeva-Ivanova, Rafe Lyall, Amol Nankar, Dimitrina Kostova, Massimo Turina, Marta Vallino
Pubblicato in: Journal of Plant Pathology, Numero 103/1, 2021, Pagina/e 375-375, ISSN 1125-4653
Editore: Societa Italiana di Patologia Vegetale
DOI: 10.1007/s42161-020-00702-3

A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts

Autori: Youjun Zhang, Arun Sampathkumar, Sandra Mae-Lin Kerber, Corné Swart, Carsten Hille, Kumar Seerangan, Alexander Graf, Lee Sweetlove, Alisdair R. Fernie
Pubblicato in: Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-18234-w

Exploiting Natural Variation in Tomato to Define Pathway Structure and Metabolic Regulation of Fruit Polyphenolics in the Lycopersicum Complex

Autori: 39. Tohge T., Scossa F., Wendenburg R., Frasse P., Balbo I., Watanabe M., Alseekh S., Jadhav S., Delfin J., Lohse M., Giavalisco P., Usadel B., Zhang Y., Luo J., Bouzayen M., Fernie A.R.
Pubblicato in: Molecular Plant Volume 13, Numero 7, 2020, Pagina/e 1027-1046, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2020.04.004

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Autori: Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R.
Pubblicato in: Current protocols, 2022, ISSN 2691-1299
Editore: Wiley
DOI: 10.1002/cpz1.371

Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Autori: Kaixuan Zhang, Milen I. Georgiev and Meiliang Zhou1
Pubblicato in: Genom Biology, 2021, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1186/s13059-020-02217-7

Treasure from garden: Bioactive compounds of buckwheat

Autori: Md. Nurul Huda, Shuai Lu, Tanzim Jahan, Mengqi Ding, Rintu Jha, Kaixuan Zhang, Wei Zhang, Milen I. Georgiev, Sang Un Park, Meiliang Zhou
Pubblicato in: Food Chemistry, Numero 335, 2021, Pagina/e 127653, ISSN 0308-8146
Editore: Elsevier BV
DOI: 10.1016/j.foodchem.2020.127653

Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance

Autori: Jiang L., Yoshida T., Stiegert S., Jing, Y., Alseekh S., Lenhard M., Pérez-Alfocea F., Fernie A.R.
Pubblicato in: Plant Phisiology, 2021, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiaa034

Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

Autori: Aakansha Kanojia, Saurabh Gupta, Maria Benina, Alisdair R Fernie, Bernd Mueller-Roeber, Tsanko Gechev, Paul P Dijkwel
Pubblicato in: Journal of Experimental Botany, Numero 71/20, 2020, Pagina/e 6340-6354, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/eraa347

Therapeutic potential of phenylethanoid glycosides: A systematic review

Autori: Lipeng Wu, Milen I. Georgiev, Hui Cao, Lutfun Nahar, Hesham R. El‐Seedi, Satyajit D. Sarker, Jianbo Xiao, Baiyi Lu
Pubblicato in: Medicinal Research Reviews, Numero 40/6, 2020, Pagina/e 2605-2649, ISSN 0198-6325
Editore: John Wiley & Sons Inc.
DOI: 10.1002/med.21717

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis

Autori: Mohamed A. Salem, Leonardo Perez de Souza, Ahmed Serag, Alisdair R. Fernie, Mohamed A. Farag, Shahira M. Ezzat, Saleh Alseekh
Pubblicato in: Metabolites, Numero 10/1, 2020, Pagina/e 37, ISSN 2218-1989
Editore: MDPI
DOI: 10.3390/metabo10010037

Dissection of the domestication‐shaped genetic architecture of lettuce primary metabolism

Autori: Weiyi Zhang, Saleh Alseekh, Xiang Zhu, Qinghua Zhang, Alisdair R. Fernie, Hanhui Kuang, Weiwei Wen
Pubblicato in: The Plant Journal, Numero 104/3, 2020, Pagina/e 613-630, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14950

Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis

Autori: YoujunZhang,Jonas Giese,Sandra M.Kerbler,Beata Siemiatkowska, Leonardo Perez de Souza, Jessica Alper, David Barbosa Medeiro, Dirk K.Hinch, Danilo M.Daloso, Mark Stitt, Iris Finkemeier, Alisdair R.Fernie
Pubblicato in: Molecular Plant, 2021, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2021.03.023

Green (cell) factories for advanced production of plant secondary metabolites

Autori: Andrey S. Marchev, Zhenya P. Yordanova, Milen I. Georgiev
Pubblicato in: Critical Reviews in Biotechnology, Numero 40/4, 2020, Pagina/e 443-458, ISSN 0738-8551
Editore: Taylor & Francis
DOI: 10.1080/07388551.2020.1731414

MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle

Autori: Yan Li, Yang Chen, Lu Zhou, Shengjie You, Heng Deng, Ya Chen, Saleh Alseekh, Yong Yuan, Rao Fu, Zixin Zhang, Dan Su, Alisdair R. Fernie, Mondher Bouzayen, Tao Ma, Mingchun Liu, Yang Zhang
Pubblicato in: Molecular Plant, Numero 13/8, 2020, Pagina/e 1203-1218, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2020.06.005

First report of Cucurbit aphid-borne yellows virus causing yellowing disease on pumpkin (Cucurbita pepo) and cucumber (Cucumis sativus) in Bulgaria

Autori: Radeva-Ivanova V., Pasev G., Lyall R., Angelov M., Nankar A.N., Kostova D.
Pubblicato in: APS Journal, 2022, ISSN 0191-2917
Editore: American Phytopathological Society
DOI: 10.1094/pdis-09-21-2030-pdn

Characterization of effects of genetic variants via genome-scale metabolic modelling.

Autori: Tong, H., Küken, A., Razaghi-Moghadam, Z. Nikoloski
Pubblicato in: Cellular and Molecular Life Sciences, 2021, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1007/s00018-021-03844-4

The Assembly of Super-Complexes in the Plant Chloroplast

Autori: Qin K., Fernie A.R., Zhang Y.
Pubblicato in: Biomolecules, 2021, ISSN 2218-273X
Editore: MDPI
DOI: 10.3390/biom11121839

Primary metabolic processes as drivers of leaf ageing.

Autori: Kanojia A., Shrestha K.D., Dijkwel P.
Pubblicato in: Cellular and Molecular Life Sciences, 2021, ISSN 1420-682X
Editore: Birkhauser Verlag
DOI: 10.1007/s00018-021-03896-6

Evaluation of pepper (Capsicum annuum L.) varieties to several methods of inoculation with Verticillium dahliae Kleb. in different conditions

Autori: Vasileva K., Todorova V.
Pubblicato in: Bulgarian Journal of Agricultural Sciences 26 (2), 2020, Pagina/e 423–430, ISSN 1310-0351
Editore: Agricultural Academy
DOI: 10.5281/zenodo.4707211

Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.

Autori: Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J.
Pubblicato in: Science China Life Sciences, 2022, ISSN 1674-7305
Editore: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2064-7

MeJA-responsive bHLH transcription factor LjbHLH7 regulates cyanogenic glucoside biosynthesis in Lotus japonicus

Autori: Chen C., Liu F., Zhang K., Niu X., Zhao H., Liu Q., Georgiev M.I., Xu X., Zhang X., Zhou M.
Pubblicato in: Journal of Experimental Botany, 2022, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/erac026

L2,1-norm regularized multivariate regression model with applications to genomic prediction

Autori: Mbebi AJ, Tong H, Nikoloski Z
Pubblicato in: Bioinformatics, 2021, ISSN 1367-4803
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/btab212

Anti-Adipogenic Effect of Alchemilla monticola is Mediated Via PI3K/AKT Signaling Inhibition in Human Adipocytes

Autori: Mladenova S.G., Vasileva L.V., Savova M.S., Marchev A.S., Tews D., Wabitsch M., Ferrante C., Orlando G., Georgiev M.I.
Pubblicato in: Frontiers in Pharmacology, 2021, ISSN 1663-9812
Editore: Frontiers Media S.A.
DOI: 10.3389/fphar.2021.707507

PlantaSyst: Teaming up for Systems Biology and Biotechnology

Autori: Tsanko Gechev, Milen I. Georgiev, Alisdair R. Fernie
Pubblicato in: Trends in Plant Science, Numero 25/7, 2020, Pagina/e 621-624, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2020.04.010

Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass

Autori: Krahmer J., Abbas A., Mengin V., Ishihara H., Romanowski A., Furniss J.J., Moraes T.A., Krohn N., Annunziata M.G., Feil R., Alseekh S., Obata T., Fernie A.R., Stitt M. and Halliday, K.J.
Pubblicato in: Journal of Experimental Botany, 2021, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/erab038

Multi-omics analysis of early leaf development in Arabidopsis thaliana

Autori: Omidbakhshfard M. A., Sokolowska E. M., Di Vittori V., Perez de Souza L., Kuhalskaya A., Brotman Y., Alseekh S., Fernie A.R., Skirycz, A.
Pubblicato in: Patterns, 2021, ISSN 2666-3899
Editore: Elsevier
DOI: 10.1016/j.patter.2021.100235

Usnic Acid Treatment Changes the Composition of Mycobacterium tuberculosis Cell Envelope and Alters Bacterial Redox Status

Autori: Elwira Sieniawska, Rafal Sawicki, Wieslaw Truszkiewicz, Andrey S. Marchev, Milen I. Georgiev
Pubblicato in: ASM Journals mSystems Vol. 6, No. 3, 2021, ISSN 0021-9193
Editore: American Society for Microbiology
DOI: 10.1128/msystems.00097-21

Circadian Control of Metabolism by the Clock Component TOC1

Autori: Cervela-Cardona L., Yoshida T., Zhang Y., Okada M., Fernie A.R., Mas P.,
Pubblicato in: Frotiers in Plant Sciennce, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.683516

Assessment of Fruit Quality and Fruit Morphology in Androgenic Pepper Lines (Capsicum annuum L.)

Autori: Grozeva S., Tringovska I., Nankar AN., Todorova V., Kostova D.
Pubblicato in: Crop Breeding, Genetics and Genomics, Numero Crop Breed Genet Genom. 2020;2(1):e200005., 2020, ISSN 2632-7309
Editore: Hapres
DOI: 10.20900/cbgg20200005

Effect of incubation period and culture medium on pepper anther culture.

Autori: Grozeva S., Nankar AN.
Pubblicato in: Effect of incubation period and culture medium on pepper anther culture. Indian Journal of Biotechnology. 19 (1), 2020, Pagina/e 53-59, ISSN 0975-0967
Editore: Indian Journal of Biotechnology
DOI: 10.5281/zenodo.4711172

The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition

Autori: Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Jr. Tiozon R.N., Anonuevo J.J., deGuzman M.K., Alseekh S., Mbanjo E.G.N., Boyd L.A., Fernie A.R., Sreenivasulu N.
Pubblicato in: The Plant Journal, 2021, ISSN 1365-313X
Editore: Wiley
DOI: 10.1111/tpj.15182

Isolation, Structural Properties, and Bioactivities of Polysaccharides from Mushrooms Termitomyces: A Review

Autori: Liu J., Wang Y., Wu J., Georgiev M.I., Xu B., Wong K.H., Bai W., Tian L.
Pubblicato in: Journal of Agricultural and Food Chemistry, 2022, ISSN 0021-8561
Editore: American Chemical Society
DOI: 10.1021/acs.jafc.1c06443

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Autori: Kroc M., Tomaszewska M., Czepiel K., Bitocchi E., Oppermann M., Neumann K., Guasch L., Bellucci E., Alseekh S., Graner A., Fernie A.R., Papa R., Susek K.
Pubblicato in: Current Protocols, 2021, ISSN 2691-1299
Editore: Wiley
DOI: 10.1002/cpz1.191

Corrigendum to: Posttranslational Modification of the NADP-Malic Enzyme Involved in C4 Photosynthesis Modulates the Enzymatic Activity during the Day

Autori: Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G.
Pubblicato in: The Plant cell, 2022, ISSN 1040-4651
Editore: American Society of Plant Biologists
DOI: 10.1093/plcell/koab262

SWATH-MS-Based Proteomics: Strategies and Applications in Plants

Autori: Mo-Xian Chen, Youjun Zhang, Alisdair R. Fernie, Ying-Gao Liu, Fu-Yuan Zhu
Pubblicato in: Trends in Biotechnology, Numero 39/5, 2021, Pagina/e 433-437, ISSN 0167-7799
Editore: Elsevier BV
DOI: 10.1016/j.tibtech.2020.09.002

Domestication of Crop Metabolomes: Desired and Unintended Consequences

Autori: Alseekh S., Scossa F., Wen W., Luo J., Yan J., Beleggia R., Klee H.J., Huang S., Papa R., Fernie A.R.
Pubblicato in: Trends in Plant Science, 2021, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.005

Rosmarinic acid attenuates obesity and obesity-related inflammation in human adipocytes

Autori: Liliya V.Vasileva, Martina S.Savova, Daniel Tews, Martin Wabitsch, Milen I.Georgiev
Pubblicato in: Food and Chemical Toxicology, 2021, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2021.112002

Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits

Autori: Tong H., Nankar A.N., Liu J., Todorova V., Ganeva D., Grozeva S., Tringovska I., Pasev G., Radeva-Ivanova V., Gechev T., Kostova D., Nikoloski Z. (
Pubblicato in: Horticulture Research, 2022, ISSN 2052-7276
Editore: Oxford Academic
DOI: 10.1093/hr/uhac072

Quantitative trait loci analysis of seed‐specialized metabolites reveals seed‐specific flavonols and differential regulation of glycoalkaloid content in tomato

Autori: Saleh Alseekh, Itai Ofner, Zhongyuan Liu, Sonia Osorio, Jose Vallarino, Robert L. Last, Dani Zamir, Takayuki Tohge, Alisdair R. Fernie
Pubblicato in: The Plant Journal, Numero 103/6, 2020, Pagina/e 2007-2024, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14879

MicroRNA profiling the resurrection plant Haberlea rhodopensis unveils essential regulators of survival under severe drought

Autori: E. APOSTOLOVA, M. GOZMANOVA, L. NACHEVA, Z. IVANOVA, V. TONEVA, I. MINKOV, V. BAEV, G. YAHUBYAN
Pubblicato in: Biologia plantarum, Numero 64, 2020, Pagina/e 541-550, ISSN 0006-3134
Editore: Kluwer Academic Publishers
DOI: 10.32615/bp.2020.062

Anti-adipogenic activity of maackiain and ononin is mediated via inhibition of PPARγ in human adipocytes

Autori: Mladenova S.G., Savova M.S., Marchev A.S., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I.
Pubblicato in: Biomedicine and Pharmacotherapy, 2022, ISSN 0753-3322
Editore: Elsevier Masson
DOI: 10.1016/j.biopha.2022.112908

The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Autori: Bellucci E., Aguilar O.M., Alseekh S., Bett K., Brezeanu C., Cook D., De la Rosa L., Delledonne M., Dostatny D.F., Ferreira J.J., Geffroy V., Ghitarrini S., Kroc M., Kumar Agrawal S, Logozzo G., Marino M., Mary-Huard T., McClean P., Megli V., Messer T., Muel F., Nanni L., Neumann K., Servalli F., Străjeru S., Varshney R. K., Vasconcelos M. W., Zaccardelli M., Zavarzin A., Bitocchi E., Frontoni E.
Pubblicato in: The Plant Journal, 2021, ISSN 1365-313X
Editore: Wiley
DOI: 10.1111/tpj.15472

Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis

Autori: Feng Zhu, Saleh Alseekh, Kaan Koper, Hao Tong, Zoran Nikoloski, Thomas Naake, Haijun Liu, Jianbing Yan, Yariv Brotman, Weiwei Wen, Hiroshi Maeda, Yunjiang Cheng, and Alisdair R Fernie
Pubblicato in: The Plant Cell, 2022, ISSN 3462-3442
Editore: Oxford University Press
DOI: 10.1093/plcell/koab251

Formulation and Testing of Antioxidant and Protective Effect of Hyalurosomes Loading Extract Rich in Rosmarinic Acid Biotechnologically Produced from Lavandula angustifolia Miller

Autori: Perra M., Fancello L., Castangia I., Allaw M., Escribano-Ferrer E., Peris J.E., Usach I., Manca M.L., Koycheva I.K., Georgiev M.I., Manconi M.
Pubblicato in: Molecules, 2022, ISSN 1420-3049
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules27082423

Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation-tolerant plant

Autori: Meriem Durgud, Saurabh Gupta, Ivan Ivanov, Amin Omidbakhshfard, Maria Benina, Saleh Alseekh, Nikola Staykov, Mareike Hauenstein, Paul Dijkwel, Stefan Hörtensteiner, Valentina Toneva, Yariv Brotman, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko Gechev
Pubblicato in: Plant Physiology, 2018, Pagina/e pp.00055.2018, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.18.00055

Jasmonate-responsive MYB factors spatially repress rutin biosynthesis in Fagopyrum tataricum

Autori: Kaixuan Zhang, Maria D Logacheva, Yu Meng, Jianping Hu, Dongpu Wan, Long Li, Dagmar Janovská, Zhiyong Wang, Milen I Georgiev, Zhuo Yu, Fuyu Yang, Mingli Yan, Meiliang Zhou
Pubblicato in: Journal of Experimental Botany, Numero 69/8, 2018, Pagina/e 1955-1966, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/ery032

Targeting ncRNAs by plant secondary metabolites: The ncRNAs game in the balance towards malignancy inhibition

Autori: Diana Gulei, Nikolay Mehterov, Seyed Mohammad Nabavi, Atanas Georgiev Atanasov, Ioana Berindan-Neagoe
Pubblicato in: Biotechnology Advances, 2017, ISSN 0734-9750
Editore: Elsevier BV
DOI: 10.1016/j.biotechadv.2017.11.003

Metabolomics 20 years on: what have we learned and what hurdles remain?

Autori: Saleh Alseekh, Alisdair R. Fernie
Pubblicato in: The Plant Journal, Numero 94/6, 2018, Pagina/e 933-942, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.13950

The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants

Autori: Federico Scossa, Maria Benina, Saleh Alseekh, Youjun Zhang, Alisdair Fernie
Pubblicato in: Planta Medica, 2018, ISSN 0032-0943
Editore: Georg Thieme Verlag
DOI: 10.1055/a-0630-1899

Quantitative trait loci analysis identifies a prominent gene involved in the production of fatty-acid-derived flavor volatiles in tomato

Autori: Karolina Garbowicz, Zhongyuan Liu, Saleh Alseekh, Denise Tieman, Mark Taylor, Anastasiya Kuhalskaya, Itai Ofner, Dani Zamir, Harry J. Klee, Alisdair R. Fernie, Yariv Brotman
Pubblicato in: Molecular Plant, 2018, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2018.06.003

The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato

Autori: Xuemin Ma, Youjun Zhang, Veronika Turečková, Gang-Ping Xue, Alisdair R. Fernie, Bernd Mueller-Roeber, Salma Balazadeh
Pubblicato in: Plant Physiology, Numero 177/3, 2018, Pagina/e 1286-1302, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.18.00292

Defining the convergence of ethylene and auxin signaling in tomato

Autori: Alisdair R. Fernie, Saleh Alseekh
Pubblicato in: New Phytologist, Numero 219/2, 2018, Pagina/e 479-481, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.15251

Modifications of dietary flavonoids towards improved bioactivity: An update on structure–activity relationship

Autori: Lei Chen, Hui Teng, Zhenglu Xie, Hui Cao, Wai San Cheang, Krystyna Skalicka-Woniak, Milen I. Georgiev, Jianbo Xiao
Pubblicato in: Critical Reviews in Food Science and Nutrition, Numero 58/4, 2017, Pagina/e 513-527, ISSN 1040-8398
Editore: Taylor & Francis
DOI: 10.1080/10408398.2016.1196334

Rewiring of the Fruit Metabolome in Tomato Breeding

Autori: Guangtao Zhu, Shouchuang Wang, Zejun Huang, Shuaibin Zhang, Qinggang Liao, Chunzhi Zhang, Tao Lin, Mao Qin, Meng Peng, Chenkun Yang, Xue Cao, Xu Han, Xiaoxuan Wang, Esther van der Knaap, Zhonghua Zhang, Xia Cui, Harry Klee, Alisdair R. Fernie, Jie Luo, Sanwen Huang
Pubblicato in: Cell, Numero 172/1-2, 2018, Pagina/e 249-261.e12, ISSN 0092-8674
Editore: Cell Press
DOI: 10.1016/j.cell.2017.12.019

Occurrence, biochemistry and biological effects of host-selective plant mycotoxins

Autori: Veselin Petrov, Muhammad Kamran Qureshi, Jacques Hille, Tsanko Gechev
Pubblicato in: Food and Chemical Toxicology, Numero 112, 2018, Pagina/e 251-264, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2017.12.047

Nutrigenomics in cancer: Revisiting the effects of natural compounds

Autori: Cornelia Braicu, Nikolay Mehterov, Boyan Vladimirov, Victoria Sarafian, Seyed Mohammad Nabavi, Atanas G. Atanasov, Ioana Berindan-Neagoe
Pubblicato in: Seminars in Cancer Biology, Numero 46, 2017, Pagina/e 84-106, ISSN 1044-579X
Editore: Academic Press
DOI: 10.1016/j.semcancer.2017.06.011

Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

Autori: Kevin Schwahn, Romina Beleggia, Nooshin Omranian, Zoran Nikoloski
Pubblicato in: Frontiers in Plant Science, Numero 8, 2017, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.02152

Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation

Autori: Saurabh Gupta, Yanni Dong, Paul P. Dijkwel, Bernd Mueller-Roeber, Tsanko S. Gechev
Pubblicato in: International Journal of Molecular Sciences, Numero 20/12, 2019, Pagina/e 3101, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms20123101

On the role of the tricarboxylic acid cycle in plant productivity

Autori: Youjun Zhang, Alisdair R. Fernie
Pubblicato in: Journal of Integrative Plant Biology, Numero 60/12, 2018, Pagina/e 1199-1216, ISSN 1672-9072
Editore: Blackwell Publishing Inc.
DOI: 10.1111/jipb.12690

Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation

Autori: Yi Zhang, Youjun Zhang, Heather E. McFarlane, Toshihiro Obata, Andreas S. Richter, Mark Lohse, Bernhard Grimm, Staffan Persson, Alisdair R. Fernie, Patrick Giavalisco
Pubblicato in: Plant Physiology, Numero 178/1, 2018, Pagina/e 101-117, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.18.00684

First report of Peanut stunt virus on beans in Bulgaria

Autori: G. Pasev, V. Radeva-Ivanova, Y. Manoussopoulos, M. Turina, D. Kostova
Pubblicato in: New Disease Reports, Numero 38, 2018, Pagina/e 9, ISSN 2044-0588
Editore: The British Society for Plant Pathology
DOI: 10.5197/j.2044-0588.2018.038.009

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Autori: Adriano Nunes-Nesi, Saleh Alseekh, Franklin Magnum de Oliveira Silva, Nooshin Omranian, Gabriel Lichtenstein, Mohammad Mirnezhad, Roman R. Romero González, Julia Sabio y Garcia, Mariana Conte, Kirsten A. Leiss, Peter G. L. Klinkhamer, Zoran Nikoloski, Fernando Carrari, Alisdair R. Fernie
Pubblicato in: Metabolomics, Numero 15/4, 2019, ISSN 1573-3882
Editore: Springer Verlag
DOI: 10.1007/s11306-019-1503-8

Antidepressant-like effect of salidroside and curcumin on the immunoreactivity of rats subjected to a chronic mild stress model

Autori: Liliya V. Vasileva, Kremena E. Saracheva, Mariya V. Ivanovska, Atanaska P. Petrova, Andrey S. Marchev, Milen I. Georgiev, Mariana A. Murdjeva, Damiyanka P. Getova
Pubblicato in: Food and Chemical Toxicology, Numero 121, 2018, Pagina/e 604-611, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2018.09.065

Causes and solutions to “globesity”: The new fa(s)t alarming global epidemic

Autori: Liliya V. Vasileva, Andrey S. Marchev, Milen I. Georgiev
Pubblicato in: Food and Chemical Toxicology, Numero 121, 2018, Pagina/e 173-193, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2018.08.071

Data Reduction Approaches for Dissecting Transcriptional Effects on Metabolism

Autori: Kevin Schwahn, Zoran Nikoloski
Pubblicato in: Frontiers in Plant Science, Numero 9, 2018, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.00538

Interorganelle Communication: Peroxisomal MALATE DEHYDROGENASE2 Connects Lipid Catabolism to Photosynthesis through Redox Coupling in Chlamydomonas

Autori: Fantao Kong, Adrien Burlacot, Yuanxue Liang, Bertrand Légeret, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie, Anja Krieger-Liszkay, Fred Beisson, Gilles Peltier, Yonghua Li-Beisson
Pubblicato in: The Plant Cell, Numero 30/8, 2018, Pagina/e 1824-1847, ISSN 1040-4651
Editore: American Society of Plant Biologists
DOI: 10.1105/tpc.18.00361

Passing the Baton: Substrate Channelling in Respiratory Metabolism

Autori: Alisdair R. Fernie, Youjun Zhang, Lee J. Sweetlove
Pubblicato in: Research, Numero 2018, 2018, Pagina/e 1-16, ISSN 2639-5274
Editore: American Association for the Advancement of Science
DOI: 10.1155/2018/1539325

In vivo detection of protein cysteine sulfenylation in plastids

Autori: Barbara De Smet, Patrick Willems, Alvaro D. Fernandez‐Fernandez, Saleh Alseekh, Alisdair R. Fernie, Joris Messens, Frank Van Breusegem
Pubblicato in: The Plant Journal, Numero 97/4, 2019, Pagina/e 765-778, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14146

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population

Autori: Yaacov Micha Brog, Sonia Osorio, Yoav Yichie, Saleh Alseekh, Elad Bensal, Andriy Kochevenko, Dani Zamir, Alisdair R. Fernie
Pubblicato in: The Plant Journal, Numero 97/2, 2019, Pagina/e 391-403, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14095

Clinopodium vulgare L. (wild basil) extract and its active constituents modulate cyclooxygenase-2 expression in neutrophils

Autori: Kristiana M. Amirova, Petya Dimitrova, Andrey S. Marchev, Ina Y. Aneva, Milen I. Georgiev
Pubblicato in: Food and Chemical Toxicology, Numero 124, 2019, Pagina/e 1-9, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2018.11.054

Crop metabolomics: from diagnostics to assisted breeding

Autori: Saleh Alseekh, Luisa Bermudez, Luis Alejandro de Haro, Alisdair R. Fernie, Fernando Carrari
Pubblicato in: Metabolomics, Numero 14/11, 2018, ISSN 1573-3882
Editore: Springer Verlag
DOI: 10.1007/s11306-018-1446-5

Phytochemical composition and antioxidant activity of 63 Balkan pepper (Capsicum annuum L.) accessions

Autori: Petko Denev, Velichka Todorova, Manol Ognyanov, Yordan Georgiev, Irina Yanakieva, Ivanka Tringovska, Stanislava Grozeva, Dimitrina Kostova
Pubblicato in: Journal of Food Measurement and Characterization, 2019, ISSN 2193-4126
Editore: Springer Science + Business Media
DOI: 10.1007/s11694-019-00171-y

Immunoregulatory natural compounds in stress-induced depression: An alternative or an adjunct to conventional antidepressant therapy?

Autori: Liliya V. Vasileva, Mariya V. Ivanovska, Marianna A. Murdjeva, Kremena E. Saracheva, Milen I. Georgiev
Pubblicato in: Food and Chemical Toxicology, Numero 127, 2019, Pagina/e 81-88, ISSN 0278-6915
Editore: Elsevier BV
DOI: 10.1016/j.fct.2019.03.004

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Autori: Alexey Shapiguzov, Julia P Vainonen, Kerri Hunter, Helena Tossavainen, Arjun Tiwari, Sari Järvi, Maarit Hellman, Fayezeh Aarabi, Saleh Alseekh, Brecht Wybouw, Katrien Van Der Kelen, Lauri Nikkanen, Julia Krasensky-Wrzaczek, Nina Sipari, Markku Keinänen, Esa Tyystjärvi, Eevi Rintamäki, Bert De Rybel, Jarkko Salojärvi, Frank Van Breusegem, Alisdair R Fernie, Mikael Brosché, Perttu Permi, Eva-M
Pubblicato in: eLife, Numero 8, 2019, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.43284

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Autori: Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev
Pubblicato in: Cellular and Molecular Life Sciences, 2019, ISSN 1420-682X
Editore: Birkhauser Verlag
DOI: 10.1007/s00018-019-03202-5

COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors

Autori: Gita Naseri, Jessica Behrend, Lisa Rieper, Bernd Mueller-Roeber
Pubblicato in: Nature Communications, Numero 10/1, 2019, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-019-10224-x

Application of high-throughput phenotyping tool Tomato Analyzer to characterize Balkan Capsicum fruit diversity

Autori: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Velichka Todorova, Dimitrina Kostova
Pubblicato in: Scientia Horticulturae, Numero 260, 2020, Pagina/e 108862, ISSN 0304-4238
Editore: Elsevier BV
DOI: 10.1016/j.scienta.2019.108862

Large‐scale metabolite quantitative trait locus analysis provides new insights for high‐quality maize improvement

Autori: Kun Li, Weiwei Wen, Saleh Alseekh, Xiaohong Yang, Huan Guo, Wenqiang Li, Luxi Wang, Qingchun Pan, Wei Zhan, Jie Liu, Yanhua Li, Xiao Wu, Yariv Brotman, Lothar Willmitzer, Jiansheng Li, Alisdair R. Fernie, Jianbing Yan
Pubblicato in: The Plant Journal, 2019, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14317

Extensive Variations in Diurnal Growth Patterns and Metabolism Among Ulva spp. Strains

Autori: Antoine Fort, Morgane Lebrault, Margot Allaire, Alberto A. Esteves-Ferreira, Marcus McHale, Francesca Lopez, Jose M. Fariñas-Franco, Saleh Alseekh, Alisdair R. Fernie, Ronan Sulpice
Pubblicato in: Plant Physiology, Numero 180/1, 2019, Pagina/e 109-123, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.18.01513

Exploring the Diversity of Plant Metabolism

Autori: Chuanying Fang, Alisdair R. Fernie, Jie Luo
Pubblicato in: Trends in Plant Science, Numero 24/1, 2019, Pagina/e 83-98, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2018.09.006

MYB Transcription Repressors Regulate Plant Secondary Metabolism

Autori: Cheng Chen, Kaixuan Zhang, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Xinquan Zhang, Meiliang Zhou
Pubblicato in: Critical Reviews in Plant Sciences, Numero 38/3, 2019, Pagina/e 159-170, ISSN 0735-2689
Editore: Taylor & Francis
DOI: 10.1080/07352689.2019.1632542

Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize

Autori: Masaharu Suzuki, Shan Wu, Manaki Mimura, Saleh Alseekh, Alisdair R. Fernie, Andrew D. Hanson, Donald R. McCarty
Pubblicato in: The Plant Journal, 2019, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14535

The Structure and Function of Major Plant Metabolite Modifications

Autori: Shouchuang Wang, Saleh Alseekh, Alisdair R. Fernie, Jie Luo
Pubblicato in: Molecular Plant, Numero 12/7, 2019, Pagina/e 899-919, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2019.06.001

Comparative metabolite profiling of two switchgrass ecotypes reveals differences in drought stress responses and rhizosheath weight

Autori: Tie-Yuan Liu, Mo-Xian Chen, Youjun Zhang, Fu-Yuan Zhu, Ying-Gao Liu, Yuan Tian, Alisdair R. Fernie, Nenghui Ye, Jianhua Zhang
Pubblicato in: Planta, Numero 250/4, 2019, Pagina/e 1355-1369, ISSN 0032-0935
Editore: Springer Verlag
DOI: 10.1007/s00425-019-03228-w

Redox-Regulation of Photorespiration through Mitochondrial Thioredoxin o1

Autori: Ole Reinholdt, Saskia Schwab, Youjun Zhang, Jean-Philippe Reichheld, Alisdair R. Fernie, Martin Hagemann, Stefan Timm
Pubblicato in: Plant Physiology, Numero 181/2, 2019, Pagina/e 442-457, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.19.00559

Transposon-associated polymorphisms of stress-responsive gene promoters in natural variants of Arabidopsis thaliana

Autori: Mladen Naydenov, Nadezhda Gospodinova, Elena Apostolova, Nikolaj Anachkov, Vesselin Baev, Mariyana Gozmanova, Ivan Minkov, Galina Yahubyan
Pubblicato in: Acta Biochimica Polonica, Numero 65/3, 2018, ISSN 0001-527X
Editore: Polskie Towarzystwo Biochemiczne
DOI: 10.18388/abp.2017_1590

LoopRNA – Java Module for RNA Structure Annotation

Autori: Georgi Minkov, Valentina Toneva, Zdravka Ivanova, Vesselin Baev
Pubblicato in: Comptes rendus de l’Acade'mie bulgare des Sciences, Numero Vol 71, No9, 2018, Pagina/e 1215-1221, ISSN 1310-1331
Editore: "BAS publishing ""Prof.Malin Darinov"""
DOI: 10.7546/crabs.2018.09.08

A new liquid chromatography-high resolution Orbitrap mass spectrometry-based strategy to characterize Glucuronide Oleanane-type Triterpenoid Carboxylic Acid 3, 28-O-Bidesmosides (GOTCAB) saponins.A case study of Gypsophila glomerata Pall ex M. B. (Caryophyllaceae)

Autori: Reneta Gevrenova, Krum Bardarov, Sabine Bouguet-Bonnet, Yulian Voynikov, Vessela Balabanova, Dimitrina Zheleva-Dimitrova, Max Henry
Pubblicato in: Journal of Pharmaceutical and Biomedical Analysis, Numero 159, 2018, Pagina/e 567-581, ISSN 0731-7085
Editore: Elsevier BV
DOI: 10.1016/j.jpba.2018.07.041

Evaluation of collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb.

Autori: Katya Vasileva, Velichka Todorova, Stojka Masheva
Pubblicato in: Bulgarian Journal of Agricultural Science, Numero 25 (No 5) 2019, 2019, Pagina/e 1030-1038, ISSN 2534-983X
Editore: Agricultural Academy of Bulgaria

Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment

Autori: Yanni Dong, Saurabh Gupta, Rixta Sievers, Jason J. Wargent, David Wheeler, Joanna Putterill, Richard Macknight, Tsanko Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Pubblicato in: BMC Genomics, Numero 20/1, 2019, ISSN 1471-2164
Editore: BioMed Central
DOI: 10.1186/s12864-019-6084-4

Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation

Autori: Mo-Xian Chen, Fu-Yuan Zhu, Bei Gao, Kai-Long Ma, Youjun Zhang, Alisdair R. Fernie, Xi Chen, Lei Dai, Neng-Hui Ye, Xue Zhang, Yuan Tian, Di Zhang, Shi Xiao, Jianhua Zhang, Ying-Gao Liu
Pubblicato in: Plant Physiology, 2019, Pagina/e pp.00430.2019, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1104/pp.19.00430

Rapid High-Yield Transient Expression of Swine Hepatitis E ORF2 Capsid Proteins in Nicotiana benthamiana Plants and Production of Chimeric Hepatitis E Virus-Like Particles Bearing the M2e Influenza Epitope

Autori: Gergana G. Zahmanova, Milena Mazalovska, Katerina H. Takova, Valentina T. Toneva, Ivan N. Minkov, Eugenia S. Mardanova, Nikolai V. Ravin, George P. Lomonossoff
Pubblicato in: Plants, Numero 9/1, 2020, Pagina/e 29, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants9010029

Untargetted Metabolomic Exploration of the Mycobacterium tuberculosis Stress Response to Cinnamon Essential Oil

Autori: Elwira Sieniawska, Rafał Sawicki, Joanna Golus, Milen I. Georgiev
Pubblicato in: Biomolecules, Numero 10/3, 2020, Pagina/e 357, ISSN 2218-273X
Editore: MDPI
DOI: 10.3390/biom10030357

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress

Autori: Mohammad Amin Omidbakhshfard, Neerakkal Sujeeth, Saurabh Gupta, Nooshin Omranian, Kieran J. Guinan, Yariv Brotman, Zoran Nikoloski, Alisdair R. Fernie, Bernd Mueller-Roeber, Tsanko S. Gechev
Pubblicato in: International Journal of Molecular Sciences, Numero 21/2, 2020, Pagina/e 474, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21020474

Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping

Autori: Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, Daniela Ganeva, Dimitrina Kostova
Pubblicato in: Plants, Numero 9/2, 2020, Pagina/e 197, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants9020197

Molecular priming as an approach to induce tolerance against abiotic and oxidative stresses in crop plants

Autori: Pavel Kerchev, Tom van der Meer, Neerakkal Sujeeth, Arno Verlee, Christian V. Stevens, Frank Van Breusegem, Tsanko Gechev
Pubblicato in: Biotechnology Advances, 2019, Pagina/e 107503, ISSN 0734-9750
Editore: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107503

PC2P: parameter-free network-based prediction of protein complexes

Autori: Sara Omranian, Angela Angeleska, Zoran Nikoloski
Pubblicato in: Bioinformatics, 2021, ISSN 1367-4803
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/btaa1089

Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

Autori: Hao Tonga, Zoran Nikoloski
Pubblicato in: Journal of Plant Physiology, 2021, ISSN 0176-1617
Editore: Elsevier BV
DOI: 10.1016/j.jplph.2020.153354

The style and substance of plant flavonoid decoration; towards defining both structure and function

Autori: Saleh Alseekh, Leonardo Perez de Souza, Maria Benina, Alisdair R. Fernie
Pubblicato in: Phytochemistry, Numero 174, 2020, Pagina/e 112347, ISSN 0031-9422
Editore: Elsevier BV
DOI: 10.1016/j.phytochem.2020.112347

Resolving the metabolon: is the proof in the metabolite?

Autori: Youjun Zhang, Alisdair R Fernie
Pubblicato in: EMBO reports, Numero 21/8, 2020, ISSN 1469-221X
Editore: Nature Publishing Group
DOI: 10.15252/embr.202050774

Double Haploid Development and Assessment of Androgenic Competence of Balkan Pepper Core Collection in Bulgaria

Autori: Grozeva S., Pasev G., Radeva-Ivanova V., Todorova V., Ivanova V., Nankar A.N.
Pubblicato in: Plants, 2021, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants10112414

Rosmarinic acid - From bench to valuable applications in food industry

Autori: Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Koycheva I.K., Balcheva-Sivenova Z.P., Vasileva S.M., Georgiev M.I.
Pubblicato in: Trends in Food Science & Technology, 2021, ISSN 0924-2244
Editore: Elsevier BV
DOI: 10.1016/j.tifs.2021.03.015

Plant Systems Biology in 2022 and Beyond

Autori: Gechev T., Petrov V.
Pubblicato in: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23084159

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

Autori: Weiyi Zhang, Youjun Zhang, Haiji Qiu, Yafei Guo, Haoliang Wan, Xiaoliang Zhang, Federico Scossa, Saleh Alseekh, Qinghua Zhang, Pu Wang, Li Xu, Maximilian H-W Schmidt, Xinxin Jia, Daili Li, Anting Zhu, Fei Guo, Wei Chen, Dejiang Ni, Björn Usadel, Alisdair R. Fernie, Weiwei Wen
Pubblicato in: Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-17498-6

The Bacillus subtilis glutamate anti-metabolon

Autori: Fernie A.R., Zhang Y.
Pubblicato in: Nature Metabolism, 2022, ISSN 2522-5812
Editore: Springer Nature
DOI: 10.1038/s42255-022-00534-8

Auxin boosts energy generation pathways to fuel pollen maturation in barley

Autori: Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura ., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F.
Pubblicato in: Current Biology, 2022, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2022.02.073

Compositional Analyses Reveal Relationships among Components of Blue Maize Grains

Autori: Amol N. Nankar, M Paul Scott, Richard C. Pratt
Pubblicato in: Plants, Numero 9/12, 2020, Pagina/e 1775, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants9121775

Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.

Autori: Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R.
Pubblicato in: Plant Cell Reports, 2022, ISSN 0721-7714
Editore: Springer Verlag
DOI: 10.1007/s00299-022-02831-8

Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes

Autori: Nasser Sewelam, Dominik Brilhaus, Andrea Bräutigam, Saleh Alseekh, Alisdair R Fernie, Veronica G Maurino
Pubblicato in: Journal of Experimental Botany, Numero 71/16, 2020, Pagina/e 5098-5112, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/eraa250

The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants

Autori: Chen Jiao, Iben Sørensen, Xuepeng Sun, Honghe Sun, Hila Behar, Saleh Alseekh, Glenn Philippe, Kattia Palacio Lopez, Li Sun, Reagan Reed, Susan Jeon, Reiko Kiyonami, Sheng Zhang, Alisdair R. Fernie, Harry Brumer, David S. Domozych, Zhangjun Fei, Jocelyn K.C. Rose
Pubblicato in: Cell, Numero 181/5, 2020, Pagina/e 1097-1111.e12, ISSN 0092-8674
Editore: Cell Press
DOI: 10.1016/j.cell.2020.04.019

Ziziphus jujuba Mill. leaf extract restrains adipogenesis by targeting PI3K/AKT signaling pathway

Autori: Martina S.Savova, Liliya V.Vasileva, Saveta G.Mladenova, Kristiana M.Amirova, Claudio Ferrante, Giustino Orlando, Martin Wabitsche, Milen I.Georgiev
Pubblicato in: Biomedicine & Pharmacotherapy, 2021, ISSN 0753-3322
Editore: Elsevier Masson
DOI: 10.1016/j.biopha.2021.111934

Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis

Autori: Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber, B, Meskiene I., Schweighofer A.
Pubblicato in: Journal of Experimental Botany, 2022, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/erac018

Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein

Autori: Duarte G. T., Pandey P. K., Vaid N., Alseekh S., Fernie A.R., Nikoloski Z., Laitinen. R.
Pubblicato in: Plant cell and environment, 2021, ISSN 1365-3040
Editore: Wiley
DOI: 10.1111/pce.14146

Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant

Autori: Alexey Shapiguzov, Lauri Nikkanen, Duncan Fitzpatrick, Julia P. Vainonen, Richard Gossens, Saleh Alseekh, Fayezeh Aarabi, Arjun Tiwari, Olga Blokhina, Klára Panzarová, Zuzana Benedikty, Esa Tyystjärvi, Alisdair R. Fernie, Martin Trtílek, Eva-Mari Aro, Eevi Rintamäki, Jaakko Kangasjärvi
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 375/1801, 2020, Pagina/e 20190413, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2019.0413

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

Autori: Alexander A. Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L. F. Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis Felix Nothias, Mélissa Nothias-Esposito, Katherine N. Maloney, Biswapriya B. Misra, Alexey V. Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L. Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin J. J. van der Hooft, Mabel Gonzalez, Chiara Carazzone,
Pubblicato in: Nature Biotechnology, Numero 39/2, 2021, Pagina/e 169-173, ISSN 1087-0156
Editore: Nature Publishing Group
DOI: 10.1038/s41587-020-0700-3

When a Crop Goes Back to the Wild: Feralization

Autori: Federico Scossa, Alisdair R. Fernie
Pubblicato in: Trends in Plant Science, 2021, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2021.02.002

Efficient Production of Chimeric Hepatitis B Virus-Like Particles Bearing an Epitope of Hepatitis E Virus Capsid by Transient Expression in Nicotiana benthamiana

Autori: Gergana Zahmanova, Milena Mazalovska, Katerina Takova, Valentina Toneva, Ivan Minkov, Hadrien Peyret and George Lomonossoff
Pubblicato in: Life, 2021, ISSN 2075-1729
Editore: MDPI
DOI: 10.3390/life11010064

Natural Genetic Diversity in Tomato Flavor Genes

Autori: Pereira L., Sapkota M., Alonge M., Zheng Y., Zhang Y., Razifard H., Taitano N.K., Schatz M., Lipman Z., Fernie A.R., Wang Y, Fei Z, Caicedo A.L., Tieman D.M., Knaap E.
Pubblicato in: Frontiers in Plant Science, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.642828

Evaluation a collection of pepper (Capsicum spp.) resources for resistance to Verticillium dahliae Kleb

Autori: 77. Vasileva K, Todorova V, Masheva S.
Pubblicato in: Bulgarian Journal of Agricultural Science 25(3), 2019, Pagina/e 415-420, ISSN 1310-0351
Editore: Agricultural Academy
DOI: 10.5281/zenodo.3692692

Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa.

Autori: Gutsch A., Hendrix S., Guerriero G., Renaut J., Lutts S., Alseekh S., Fernie A.R., Hausman J.F., Vangronsveld J., Cuypers A., Sergeant K.
Pubblicato in: Cells, 2021, ISSN 2073-4409
Editore: MDPI
DOI: 10.3390/cells9122707

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Autori: Cortinovis G., Oppermann M., Neumann K., Graner A., Gioia T., Marsella M., Alseekh S., Fernie A.R., Papa R., Bellucci E., Bitocchi E.
Pubblicato in: Current protocols., 2021, ISSN 2691-1299
Editore: Wiley
DOI: 10.1002/cpz1.133

Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability

Autori: Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M.
Pubblicato in: Plant Physiology, 2022, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiac162

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Autori: Alseekh S., Aharoni A., Brotman Y., Contrepois K., D’Auria ., Ewald C. ., Ewald ., Fraser P.D., Giavalisco P., Hall R.D., Heinemann M., Link H., Luo J., Neumann S., Nielsen J., Leonardo Souza P., Saito K., Sauer U., Schroeder C.F., Schuster S., Siuzdak, G., Skirycz A., Sumner W.L., Snyder P.M., Tang H., Tohge T., Wang Y., Wen W., Wu S., Xu G., Nicola Zamboni N., R. Fernie A.R.
Pubblicato in: Nature Methods, 2021, ISSN 1548-7091
Editore: Nature Publishing Group
DOI: 10.1038/s41592-021-01197-1

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits

Autori: Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, Dimitrina Kostova
Pubblicato in: PLOS ONE, Numero 15/8, 2020, Pagina/e e0237741, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0237741

Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

Autori: Aarabi F., Rakpenthai A., Barahimipour R., Gorka M., Alseekh S., Zhang Y., Salem M. A., Brückner F., Omranian N., Watanabe M., Nikoloski Z., Giavalisco P., Tohge T., Graf A., Fernie A.R., Hoefgen R.
Pubblicato in: Plant Physiology, 2021, ISSN 0032-0889
Editore: American Society of Plant Biologists
DOI: 10.1093/plphys/kiab386

Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues

Autori: Alisdair R. Fernie, Youjun Zhang, Arun Sampathkumar
Pubblicato in: Trends in Biochemical Sciences, Numero 45/8, 2020, Pagina/e 637-638, ISSN 0968-0004
Editore: Elsevier BV
DOI: 10.1016/j.tibs.2020.04.003

Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein

Autori: Jung J-W., Zahmanova G., Minkov I., Lomonossoff G.P.
Pubblicato in: Plant Biotechnolgy Journal, 2022, ISSN 1467-7644
Editore: Blackwell Publishing Inc.
DOI: 10.1111/pbi.13813

Comparative Molecular and Metabolic Profiling of Two Contrasting Wheat Cultivars under Drought Stress

Autori: Fadoul H.E, Martínez Rivas F. , Neumann K., Balazadeh S., Fernie A.R., Alseekh S.
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms222413287

Ubiquitin proteins and the orchestration of transcription factors activity.

Autori: He Y., Zhang K., Georgiev M.I.
Pubblicato in: Critical Reviews in Plant Sciences, 2021, ISSN 0735-2689
Editore: Taylor & Francis
DOI: 10.1080/07352689.2021.1951491

A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses

Autori: Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C., Alseekh S., Fernie A.R., Hanson A.D., McCarty D.R.
Pubblicato in: Metabolites, 2021, ISSN 2218-1989
Editore: MDPI
DOI: 10.3390/metabo11110797

Plant metabolism paves the way for breeding crops with high nutritional value and stable yield

Autori: Jin C., Fang C., Zhang Y., Fernie A.R., Luo J.
Pubblicato in: Science China Life Sciences, 2021, ISSN 1674-7305
Editore: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2004-0

JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat

Autori: Ding M., He Y., Zhang K., Li J., Shi Y., Zhao M., Meng Y., Georgiev M.I., Zhou M.
Pubblicato in: The Plant Journal, 2022, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15800

From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants

Autori: Kerbler M. S., Natale R., Fernie A.R., Zhang Y.
Pubblicato in: International Journal of Molecular Sciences, 2021, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22137101

Conservation and diversification of flavonoid metabolism in the plant kingdom

Autori: Weiwei Wen, Saleh Alseekh, Alisdair R Fernie
Pubblicato in: Current Opinion in Plant Biology, Numero 55, 2020, Pagina/e 100-108, ISSN 1369-5266
Editore: Elsevier BV
DOI: 10.1016/j.pbi.2020.04.004

Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance

Autori: Muhammad B. Faisal, Tsanko S. Gechev, Bernd Mueller-Roeber, Paul P. Dijkwel
Pubblicato in: BMC Plant Biology, Numero 20/1, 2020, ISSN 1471-2229
Editore: BioMed Central
DOI: 10.1186/s12870-020-02485-2

The Multiverse of Plant Small RNAs: How Can We Explore It?

Autori: Ivanova Z., Minkov G., Gisel A., Yahubyan G., Minkov I., Toneva V., Baev V.
Pubblicato in: International Journal of Molecular Sciences, 2022, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23073979

Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment

Autori: Rane R.N., Tapase S., Kanojia A., Watharkar A., Salama E., Jang M., Yadav K., Amin A.M., Pinto M.S., Cabral-Pinto, Jadhav P.J., Byong-Hun J.
Pubblicato in: Bioresource Technology, 2022, ISSN 0960-8524
Editore: Elsevier BV
DOI: 10.1016/j.biortech.2021.126246

Strategic enhancement of genetic gain for nutraceutical development in buckwheat: A genomics-driven perspective

Autori: Dinesh C. Joshi, Kaixuan Zhang, Chenglong Wang, Rahul Chandora, Muhammad Khurshid, Jinbo Li, Ming He, Milen I. Georgiev, Meiliang Zhou
Pubblicato in: Biotechnology Advances, Numero 39, 2020, Pagina/e 107479, ISSN 0734-9750
Editore: Elsevier BV
DOI: 10.1016/j.biotechadv.2019.107479

Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA

Autori: Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli, E., Martin C.
Pubblicato in: Metabolic Engineering, 2021, ISSN 2352-3409
Editore: Elsevier BV
DOI: 10.1016/j.dib.2020.106678

Annual Plant Reviews online

Autori: 21. Lyall R., Gechev T.
Pubblicato in: Annual Plant Reviews online 2020 Volume 3, 2018, ISBN 9781119312994
Editore: Wiley
DOI: 10.1002/9781119312994.apr0730

Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry

Autori: Cindy Llorente, Rosario Jimenez, Jackie, Yariv Brotman, Alisdair R. Fernie, Nese Sreenivasulu
Pubblicato in: Rice Grain Quality - Methods and Protocols, Numero 1892, 2019, Pagina/e 187-199, ISBN 978-1-4939-8912-6
Editore: Springer New York
DOI: 10.1007/978-1-4939-8914-0_11

Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance

Autori: Saleh Alseekh, Si Wu, Yariv Brotman, Alisdair R. Fernie
Pubblicato in: Plant Metabolomics, Numero 1778, 2018, Pagina/e 33-46, ISBN 978-1-4939-7818-2
Editore: Springer New York
DOI: 10.1007/978-1-4939-7819-9_3

Metabolomic Analysis of Natural Variation in Arabidopsis

Autori: Si Wu, Saleh Alseekh, Yariv Brotman, Alisdair R. Fernie
Pubblicato in: Arabidopsis Protocols, Numero 2200, 2021, Pagina/e 393-411, ISBN 978-1-0716-0879-1
Editore: Springer US
DOI: 10.1007/978-1-0716-0880-7_19

Diritti di proprietà intellettuale

ХРАНИТЕЛНА СРЕДА ЗА IN VITRO РАЗМНОЖАВАНЕ НА РАСТЕНИЯ ОТ ВИДA HABERLEA RHODOPENSIS FRIV.

Numero candidatura/pubblicazione: 5174 3980
Data: 2020-11-19

È in corso la ricerca di dati su OpenAIRE...

Risultati finali

Pubblicazioni

Diritti di proprietà intellettuale

Condividi questa pagina

Scarica