Elucidating the causes and consequences of the global pattern of epigenetic variation in Arabidopsis thaliana

Project Information

EPICLINES

Grant agreement ID: 789037

DOI

10.3030/789037

Project closed

EC signature date 15 May 2018

Start date 1 June 2018

End date 31 May 2024

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 498 468,00

EU contribution

€ 2 498 468,00

Coordinated by

GREGOR MENDEL INSTITUT FUR MOLEKULARE PFLANZENBIOLOGIE GMBH
Austria

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Non-peer reviewed articles (3)

Towards an unbiased characterization of genetic polymorphism

Author(s): Anna A. Igolkina, Sebastian Vorbrugg, Fernando A. Rabanal, Hai-Jun Liu, Haim Ashkenazy, Aleksandra E. Kornienko, Joffrey Fitz, Max Collenberg, Christian Kubica, Almudena Mollá Morales, Benjamin Jaegle, Travis Wrightsman, Vitaly Voloshin, Victor Llaca, Viktoria Nizhynska, Ilka Reichardt, Christa Lanz, Felix Bemm, Pádraic J. Flood, Sileshi Nemomissa, Angela Hancock, Ya-Long Guo, Paul Kersey, Detle
Published in: bioRxiv, 2024, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.05.30.596703

Alternative silencing states of Transposable Elements in Arabidopsis

Author(s): Valentin Hure, Florence Piron-Prunier, Tamara Yehouessi, Clémentine Vitte, Aleksandra E. Kornienko, Gabrielle Adam, Magnus Nordborg, Angélique Déléris
Published in: bioRxiv, 2024, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.03.16.585326

Bisulphite sequencing in the presence of cytosine-conversion errors

Author(s): Thomas James Ellis, Viktoria Nyzhynska, Rahul Pisupati, Almudena Mollá-Morales, Magnus Nordborg
Published in: bioRxiv, 2024, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.09.16.613193

Peer reviewed articles (6)

Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity

Author(s): Benjamin Jaegle, Rahul Pisupati, Luz Mayela Soto-Jiménez, Robin Burns, Fernando A. Rabanal, Magnus Nordborg
Published in: Genome Biology, Issue 24, 2023, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-023-02875-3

Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element–like silencing

Author(s): Aleksandra E Kornienko, Viktoria Nizhynska, Almudena Molla Morales, Rahul Pisupati, Magnus Nordborg
Published in: The Plant Cell, Issue 36, 2023, Page(s) 85-111, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1093/plcell/koad233

Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes

Author(s): Eriko Sasaki; Joanna Gunis; Ilka Reichardt-Gomez; Viktoria Nizhynska; Magnus Nordborg
Published in: PLOS Genetics, Issue 18(9), 2022, Page(s) 1-24, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1010345

Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana

Author(s): Eriko Sasaki, Taiji Kawakatsu, Joseph R. Ecker, Magnus Nordborg
Published in: PLOS Genetics, Issue 15/12, 2019, Page(s) e1008492, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1008492

On the causes of gene-body methylation variation in Arabidopsis thaliana

Author(s): Rahul Pisupati, Viktoria Nizhynska, Almudena Mollá Morales, Magnus Nordborg
Published in: PLOS Genetics, Issue 19, 2023, Page(s) e1010728, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1010728

Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus

Author(s): Anamarija Butkovic, Thomas James Ellis, Ruben Gonzalez, Benjamin Jaegle, Magnus Nordborg, Santiago F Elena
Published in: eLife, Issue 12, 2024, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.89749