Chromatin organization PROfiling with high-throughput super-resolution microscopy on a CHIP

Informazioni relative al progetto

PROCHIP

ID dell’accordo di sovvenzione: 801336

DOI

10.3030/801336

Progetto chiuso

Data della firma CE 19 Aprile 2018

Data di avvio 1 Settembre 2018

Data di completamento 28 Febbraio 2022

Finanziato da

• EXCELLENT SCIENCE - Future and Emerging Technologies (FET)

Costo totale

€ 2 496 525,00

Contributo UE

€ 2 496 525,00

Coordinato da

CONSIGLIO NAZIONALE DELLE RICERCHE
Italy

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Open Research Data Pilot (1)

Data management plan

Data management plan. Determination of research data accessible to the public

Other (7)

Kick-off meeting organization

Organization of project kick-off meeting to nominate the steering committee organize the WPs activity

LSF image simulator

LSF image simulator: realistic LSF datasets.

Third year annual meeting organization

Organization of annual meeting with project partners steering and mentoring committee

Software for phenotype profiling

Software suite dedicated to phenotype profiling

First Year annual meeting organization

Organization of project annual meeting with steering and mentoring committee to monitor the progress of the WPs activity

Real-time demodulation software of structured light

Demodulation software real time demodulation of structured light

Second year annual meeting organization

Organization of annual meeting with project partners steering and mentoring committee

Documents, reports (7)

Dissemination and exploitation plan

Report on the possible dissemination and exploitation of results.

High throughput imaging

Validation of imaging in a fluidic channel at high throughput

Phase shifter performance assesmet

Characterization of the phase shifter integrated on chip Maximum frequency will be retrieved

Updated dissemination and exploitation plan

Update of the plan containing actions for dissemination and exploitation of results on the basis of the project development

Benchmarking virtual instrumentation

Benchmarking virtual instrumentation select suitable microscopic setups

Cancer cell high throughput imaging

Retrieving high quality imaging of thousands of cancer cellssample

Optimal imaging settings for SIM

Optimal imaging settings for SIM and superresolution SIM characterization of image quality obtained by using structured light at different frequencies phases and angles

Websites, patent fillings, videos etc. (1)

Web Page and Logo

Web Page. Design and make accessible a web page for external and internal access. Project Logo designed. Available at Month 2 and constantly updated during the project.

Pubblicazioni

Peer reviewed articles (10)

GPU-accelerated real-time reconstruction in Python of three-dimensional datasets from structured illumination microscopy with hexagonal patterns

Autori: Hai Gong, Wenjun Guo and Mark A. A. Neil
Pubblicato in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2021, ISSN 1364-503X
Editore: Royal Society of London
DOI: 10.1098/rsta.2020.0162

Detecting differences of fluorescent markers distribution in single cell microscopy: textural or pointillist feature space?

Autori: Ali Ahmad, Carole Frindel and David Rousseau
Pubblicato in: Frontiers in Robotics and AI, 2020, ISSN 2296-9144
Editore: Frontiers
DOI: 10.3389/frobt.2020.00039

Laser-Assisted Etching of EagleXG Glass by Irradiation at Low Pulse-Repetition Rate

Autori: Roberto Memeo, Mattia Bertaso, Roberto Osellame, Francesca Bragheri and Andrea Crespi
Pubblicato in: APPLIED SCIENCES, 2022, ISSN 2076-3417
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/app12030948

Strategies for improved temporal response of glass-based optical switches

Autori: Calvarese, Matteo; Paiè, Petra; Ceccarelli, Francesco; Sala, Federico; Bassi, Andrea; Osellame, Roberto; Bragheri, Francesca
Pubblicato in: Scientific Reports, Vol 12, Iss 1, Pp 1-9 (2022), Numero 2, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-04218-3

Effects of Thermal Annealing on Femtosecond Laser Micromachined Glass Surfaces

Autori: Federico Sala, Petra Paié, Rebeca Martínez Vázquez, Roberto Osellame and Francesca Bragheri
Pubblicato in: Micromachines, 2021, ISSN 2072-666X
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/mi12020180

MicroVIP: Microscopy image simulation on the Virtual Imaging Platform

Autori: Ali Ahmad; Ali Ahmad; Guillaume Vanel; Sorina Camarasu-Pop; Axel Bonnet; Carole Frindel; David Rousseau
Pubblicato in: SoftwareX, Vol 16, Numero 1, 2021, Pagina/e 100854, ISSN 0950-5849
Editore: Elsevier BV
DOI: 10.1016/j.softx.2021.100854

Femtosecond-laser-written optofluidics in alumino-borosilicate glass

Autori: Andrea Crespi, Roberto Osellame, Francesca Bragheri
Pubblicato in: Optical Materials: X, Numero 4, 2019, Pagina/e 100042, ISSN 2590-1478
Editore: Elsevier
DOI: 10.1016/j.omx.2019.100042

Automatic imaging of Drosophila embryos with light sheet fluorescence microscopy on chip

Autori: Roberto Memeo, Petra Paiè, Federico Sala, Michele Castriotta, Chiara Guercio, Thomas Vaccari, Roberto Osellame, Andrea Bassi and Francesca Bragheri
Pubblicato in: Journal of Biophotonics, 2020, ISSN 1864-063X
Editore: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/jbio.202000396

Improving axial resolution in SIM using deep learning

Autori: Boland, Miguel; Cohen, Edward A. K.; Flaxman, Seth; Neil, Mark A. A.
Pubblicato in: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Numero 4, 2021, ISSN 1364-503X
Editore: Royal Society of London
DOI: 10.1098/rsta.2020.0298

High-throughput 3D imaging of single cells with light-sheet fluorescence microscopy on chip

Autori: Sala, Federico; Castriotta, Michele; Paiè, Petra; Farina, Andrea; D’Annunzio, Sarah; Zippo, Alessio; Osellame, Roberto; Bragheri, Francesca; Bassi, Andrea
Pubblicato in: Biomed Opt Express, Numero 5, 2020, ISSN 2156-7085
Editore: The Optical Society
DOI: 10.1364/boe.393892

Non-peer reviewed articles (2)

Editorial for the Special Issue on New Trends and Applications in Femtosecond Laser Micromachining

Autori: Francesca Bragheri, Petra Paiè, Rebeca Martinez Vázquez
Pubblicato in: Micromachines, 2022, ISSN 2072-666X
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/mi13020150

Optofluidic lab-on-chips for high throughput 3D imaging of cells and tissues

Autori: Federico Sala, Petra Paiè, Roberto Memeo, Roberto Osellame, Andrea Farina, Andrea Bassi, Francesca Bragheri
Pubblicato in: EPJ Web of Conferences, Numero 215, 2019, Pagina/e 11002, ISSN 2100-014X
Editore: EDP Sciences
DOI: 10.1051/epjconf/201921511002

Conference proceedings (2)

Deep learning based detection of cells in 3D light sheet fluorescence microscopy

Autori: Ali Ahmad, Carole Frindel, Pejman Rasti, David Sarrut, David Rousseau
Pubblicato in: Quantitative BioImaging Conference, 2019
Editore: None

Détection de différence de densité de marqueurs fluorescents en microscopie superrésolue : approche pointilliste ou texturale ?

Autori: Ali Ahmad, Carole Frindel, David Rousseau
Pubblicato in: 2019
Editore: GRETSI, Groupe d’Etudes du Traitement du Signal et des Images