Bacteriophage inhibition of antibiotic-resistant pathogenic microbes and founding for novel therapeutic strategies

Publicaciones

The role of virome in the gastrointestinal tract and beyond

Autores: Kawtar Tiamani; Shiqi Luo; Sarah Schulz; Jinling Xue; Rita Costa; Mohammadali Khan Mirzaei; Li Deng
Publicado en: FEMS Microbiol. Rev. 46:fuac027 (2022), Edición 46:6, 2022, Página(s) 1-12, ISSN 0168-6445
Editor: Blackwell
DOI: 10.1093/femsre/fuac027

Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection

Autores: Luo S, Ru J, Mirzaei MK, Xue J, Peng X, Ralser A, Mejías-Luque R, Gerhard M, Deng L
Publicado en: Gut Microbes, Edición 15:2, 2023, Página(s) 2257291, ISSN 1949-0976
Editor: Landes Bioscience
DOI: 10.1080/19490976.2023.2257291

Gut Phage Database: phage mining in the cave of wonders

Autores: Unterer M, Khan Mirzaei M, Li Deng
Publicado en: Signal Transduction and Targeted Therapy, Edición 6/1, 2021, Página(s) 193, ISSN 2059-3635
Editor: Springer Nature
DOI: 10.1038/s41392-021-00615-2

Proteomics reveals antiviral host response and NETosis during acute COVID-19 in high-risk patients.

Autores: Bauer A, Pachl E, Hellmuth JC, Kneidinger N, Heydarian M, Frankenberger M, Stubbe HC, Ryffel B, Petrera A, Hauck SM, Behr J, Kaiser R, Scherer C, Deng L, Teupser D, Ahmidi N, Muenchhoff M, Schubert B, Hilgendorff A.
Publicado en: Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Edición 1869:2, 2023, Página(s) 166592, ISSN 0925-4439
Editor: Elsevier BV
DOI: 10.1016/j.bbadis.2022.166592

New technologies for developing phage-based tools to manipulate the human microbiome

Autores: Khan Mirzaei M, Li Deng
Publicado en: Trends Microbiol, Edición 30/2, 2022, Página(s) 131-142, ISSN 0966-842x
Editor: Elsevier BV
DOI: 10.1016/j.tim.2021.04.007

Challenges of Studying the Human Virome - Relevant Emerging Technologies

Autores: Khan Mirzaei M, Xue J, Costa R, Ru J, Schulz S, Taranu ZE, Li Deng
Publicado en: Trends Microbiol, Edición 29/2, 2021, Página(s) 171-181, ISSN 0966-842x
Editor: Elsevier BV
DOI: 10.1016/j.tim.2020.05.021

Emerging technologies in the study of the virome

Autores: Sophie E Smith; Wanqi Huang; Kawtar Tiamani; Magdalena Unterer; Mohammadali Khan Mirzaei; Li Deng
Publicado en: Crossref, Edición 54, 2022, Página(s) 101231, ISSN 1879-6257
Editor: Elsevier BV
DOI: 10.1016/j.coviro.2022.101231

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner.

Autores: Mohammadali Khan Mirzaei; Md. Anik Ashfaq Khan; Prakash Ghosh; Zofia E. Taranu; Mariia Taguer; Jinlong Ru; Rajashree Chowdhury; Md. Mamun Kabir; Li Deng; Dinesh Mondal; Corinne F. Maurice
Publicado en: Cell Host & Microbe, Edición 27/2, 2020, Página(s) 199-212.e5, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2020.01.004

ITN—VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics

Autores: Goettsch, Winfried Beerenwinkel, Niko Deng, Li Dölken, Lars Dutilh, Bas E. Erhard, Florian Kaderali, Lars von Kleist, Max Marquet, Roland Matthijnssens, Jelle McCallin, Shawna McMahon, Dino Rattei, Thomas Van Rij, Ronald P. Robertson, David L. Schwemmle, Martin Stern-Ginossar, Noam Marz, Manja
Publicado en: Viruses, Edición 13/5, 2021, Página(s) 766, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13050766

Helicobacter pylori promotes colorectal carcinogenesis by deregulating intestinal immunity and inducing a mucus-degrading microbiota signature

Autores: Ralser A, Dietl A, Jarosch S, Engelsberger V, Wanisch A, Janssen KP, Middelhoff M, Vieth M, Quante M, Haller D, Busch DH, Deng L, Mejías-Luque R, Gerhard M.
Publicado en: Gut, Edición 72:7, 2023, Página(s) 1258-1270, ISSN 1468-3288
Editor: BMJ Publishing Group Ltd & British Society of Gastroenterology
DOI: 10.1136/gutjnl-2022-328075

Sustainable Microbiome: a symphony orchestrated by synthetic phages

Autores: Mohammadali Khan Mirzaei, Li Deng
Publicado en: Microbial Biotechnology, 2020, ISSN 1751-7915
Editor: Society for Applied Microbiology and John Wiley & Sons Ltd
DOI: 10.1111/1751-7915.13697

Targeted Single-Phage Isolation Reveals Phage-Dependent Heterogeneous Infection Dynamics

Autores: Magdalena Unterer; Mohammadali Khan Mirzaei; Li Deng
Publicado en: Crossref, Edición 11:3, 2023, Página(s) e05149-22, ISSN 2165-0497
Editor: American Society for Microbiology
DOI: 10.1128/spectrum.05149-22

Helicobacter pylori infection alters gut virome by expanding temperate phages linked to increased risk of colorectal cancer

Autores: Luo S, Ru J, Khan Mirzaei M, Xue J, Peng X, Ralser A, Hadi JL, Mejías-Luque R, Gerhard M, Deng L*
Publicado en: Gut, 2023, ISSN 1468-3288
Editor: BMJ Publishing Group Ltd & British Society of Gastroenterology
DOI: 10.1136/gutjnl-2023-330362

ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis

Autores: Jinlong Ru; Mohammadali Khan Mirzaei; Jinling Xue; Xue Peng; Li Deng
Publicado en: Crossref, Edición 15, 2023, Página(s) 2192522, ISSN 1949-0984
Editor: Taylor & Francis
DOI: 10.1080/19490976.2023.2192522

Differences in Gut Virome Related to Barrett Esophagus and Esophageal Adenocarcinoma

Autores: Ma T, Ru J, Xue J, Schulz S, Khan Mirzaei M, Janssen K-P, Quante M, Li Deng
Publicado en: Microorganisms, Edición 9/8, 2021, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms9081701

Phage Therapy in Germany—Update 2023

Autores: Willy C, Bugert JJ, Classen AY, Deng L, Düchting A, Gross J, Hammerl JA, Korf IHE, Kühn C, Lieberknecht-Jouy S, Rohde C, Rupp M, Vehreschild MJGT, Vogele K, Wienecke S, Witzenrath M, Würstle S, Ziehr H, Moelling K, Broecker F.
Publicado en: Viruses, Edición 15:2, 2023, Página(s) 588, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15020588

A rigorous assessment and comparison of enumeration methods for environmental viruses

Autores: Judith Kaletta, Carolin Pickl, Christian Griebler, Andreas Klingl, Rainer Kurmayer, Li Deng
Publicado en: Scientific Reports, Edición 10/1, 2020, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-75490-y

Defining the human gut host–phage network through single-cell viral tagging

Autores: Mária Džunková, Soo Jen Low, Joshua N. Daly, Li Deng, Christian Rinke, Philip Hugenholtz
Publicado en: Nature Microbiology, Edición 4/12, 2019, Página(s) 2192-2203, ISSN 2058-5276
Editor: Springer Nature
DOI: 10.1038/s41564-019-0526-2

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