Bacteriophage inhibition of antibiotic-resistant pathogenic microbes and founding for novel therapeutic strategies

Publikacje

The role of virome in the gastrointestinal tract and beyond

Autorzy: Kawtar Tiamani; Shiqi Luo; Sarah Schulz; Jinling Xue; Rita Costa; Mohammadali Khan Mirzaei; Li Deng
Opublikowane w: FEMS Microbiol. Rev. 46:fuac027 (2022), Numer 46:6, 2022, Strona(/y) 1-12, ISSN 0168-6445
Wydawca: Blackwell
DOI: 10.1093/femsre/fuac027

Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection

Autorzy: Luo S, Ru J, Mirzaei MK, Xue J, Peng X, Ralser A, Mejías-Luque R, Gerhard M, Deng L
Opublikowane w: Gut Microbes, Numer 15:2, 2023, Strona(/y) 2257291, ISSN 1949-0976
Wydawca: Landes Bioscience
DOI: 10.1080/19490976.2023.2257291

Gut Phage Database: phage mining in the cave of wonders

Autorzy: Unterer M, Khan Mirzaei M, Li Deng
Opublikowane w: Signal Transduction and Targeted Therapy, Numer 6/1, 2021, Strona(/y) 193, ISSN 2059-3635
Wydawca: Springer Nature
DOI: 10.1038/s41392-021-00615-2

Proteomics reveals antiviral host response and NETosis during acute COVID-19 in high-risk patients.

Autorzy: Bauer A, Pachl E, Hellmuth JC, Kneidinger N, Heydarian M, Frankenberger M, Stubbe HC, Ryffel B, Petrera A, Hauck SM, Behr J, Kaiser R, Scherer C, Deng L, Teupser D, Ahmidi N, Muenchhoff M, Schubert B, Hilgendorff A.
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Numer 1869:2, 2023, Strona(/y) 166592, ISSN 0925-4439
Wydawca: Elsevier BV
DOI: 10.1016/j.bbadis.2022.166592

New technologies for developing phage-based tools to manipulate the human microbiome

Autorzy: Khan Mirzaei M, Li Deng
Opublikowane w: Trends Microbiol, Numer 30/2, 2022, Strona(/y) 131-142, ISSN 0966-842x
Wydawca: Elsevier BV
DOI: 10.1016/j.tim.2021.04.007

Challenges of Studying the Human Virome - Relevant Emerging Technologies

Autorzy: Khan Mirzaei M, Xue J, Costa R, Ru J, Schulz S, Taranu ZE, Li Deng
Opublikowane w: Trends Microbiol, Numer 29/2, 2021, Strona(/y) 171-181, ISSN 0966-842x
Wydawca: Elsevier BV
DOI: 10.1016/j.tim.2020.05.021

Emerging technologies in the study of the virome

Autorzy: Sophie E Smith; Wanqi Huang; Kawtar Tiamani; Magdalena Unterer; Mohammadali Khan Mirzaei; Li Deng
Opublikowane w: Crossref, Numer 54, 2022, Strona(/y) 101231, ISSN 1879-6257
Wydawca: Elsevier BV
DOI: 10.1016/j.coviro.2022.101231

Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner.

Autorzy: Mohammadali Khan Mirzaei; Md. Anik Ashfaq Khan; Prakash Ghosh; Zofia E. Taranu; Mariia Taguer; Jinlong Ru; Rajashree Chowdhury; Md. Mamun Kabir; Li Deng; Dinesh Mondal; Corinne F. Maurice
Opublikowane w: Cell Host & Microbe, Numer 27/2, 2020, Strona(/y) 199-212.e5, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2020.01.004

ITN—VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics

Autorzy: Goettsch, Winfried Beerenwinkel, Niko Deng, Li Dölken, Lars Dutilh, Bas E. Erhard, Florian Kaderali, Lars von Kleist, Max Marquet, Roland Matthijnssens, Jelle McCallin, Shawna McMahon, Dino Rattei, Thomas Van Rij, Ronald P. Robertson, David L. Schwemmle, Martin Stern-Ginossar, Noam Marz, Manja
Opublikowane w: Viruses, Numer 13/5, 2021, Strona(/y) 766, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13050766

Helicobacter pylori promotes colorectal carcinogenesis by deregulating intestinal immunity and inducing a mucus-degrading microbiota signature

Autorzy: Ralser A, Dietl A, Jarosch S, Engelsberger V, Wanisch A, Janssen KP, Middelhoff M, Vieth M, Quante M, Haller D, Busch DH, Deng L, Mejías-Luque R, Gerhard M.
Opublikowane w: Gut, Numer 72:7, 2023, Strona(/y) 1258-1270, ISSN 1468-3288
Wydawca: BMJ Publishing Group Ltd & British Society of Gastroenterology
DOI: 10.1136/gutjnl-2022-328075

Sustainable Microbiome: a symphony orchestrated by synthetic phages

Autorzy: Mohammadali Khan Mirzaei, Li Deng
Opublikowane w: Microbial Biotechnology, 2020, ISSN 1751-7915
Wydawca: Society for Applied Microbiology and John Wiley & Sons Ltd
DOI: 10.1111/1751-7915.13697

Targeted Single-Phage Isolation Reveals Phage-Dependent Heterogeneous Infection Dynamics

Autorzy: Magdalena Unterer; Mohammadali Khan Mirzaei; Li Deng
Opublikowane w: Crossref, Numer 11:3, 2023, Strona(/y) e05149-22, ISSN 2165-0497
Wydawca: American Society for Microbiology
DOI: 10.1128/spectrum.05149-22

Helicobacter pylori infection alters gut virome by expanding temperate phages linked to increased risk of colorectal cancer

Autorzy: Luo S, Ru J, Khan Mirzaei M, Xue J, Peng X, Ralser A, Hadi JL, Mejías-Luque R, Gerhard M, Deng L*
Opublikowane w: Gut, 2023, ISSN 1468-3288
Wydawca: BMJ Publishing Group Ltd & British Society of Gastroenterology
DOI: 10.1136/gutjnl-2023-330362

ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis

Autorzy: Jinlong Ru; Mohammadali Khan Mirzaei; Jinling Xue; Xue Peng; Li Deng
Opublikowane w: Crossref, Numer 15, 2023, Strona(/y) 2192522, ISSN 1949-0984
Wydawca: Taylor & Francis
DOI: 10.1080/19490976.2023.2192522

Differences in Gut Virome Related to Barrett Esophagus and Esophageal Adenocarcinoma

Autorzy: Ma T, Ru J, Xue J, Schulz S, Khan Mirzaei M, Janssen K-P, Quante M, Li Deng
Opublikowane w: Microorganisms, Numer 9/8, 2021, ISSN 2076-2607
Wydawca: MDPI
DOI: 10.3390/microorganisms9081701

Phage Therapy in Germany—Update 2023

Autorzy: Willy C, Bugert JJ, Classen AY, Deng L, Düchting A, Gross J, Hammerl JA, Korf IHE, Kühn C, Lieberknecht-Jouy S, Rohde C, Rupp M, Vehreschild MJGT, Vogele K, Wienecke S, Witzenrath M, Würstle S, Ziehr H, Moelling K, Broecker F.
Opublikowane w: Viruses, Numer 15:2, 2023, Strona(/y) 588, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15020588

A rigorous assessment and comparison of enumeration methods for environmental viruses

Autorzy: Judith Kaletta, Carolin Pickl, Christian Griebler, Andreas Klingl, Rainer Kurmayer, Li Deng
Opublikowane w: Scientific Reports, Numer 10/1, 2020, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-020-75490-y

Defining the human gut host–phage network through single-cell viral tagging

Autorzy: Mária Džunková, Soo Jen Low, Joshua N. Daly, Li Deng, Christian Rinke, Philip Hugenholtz
Opublikowane w: Nature Microbiology, Numer 4/12, 2019, Strona(/y) 2192-2203, ISSN 2058-5276
Wydawca: Springer Nature
DOI: 10.1038/s41564-019-0526-2

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