Untangling eco-evolutionary impacts on diatom genomes over timescales relevant to current climate change

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Relative enrichment of ammonium and its impacts on open-ocean phytoplankton community composition under a high-emissions scenario

Autores: Pearse J. Buchanan, Juan J. Pierella Karlusich, Robyn E. Tuerena, Roxana Shafiee, E. Malcolm S. Woodward, Chris Bowler, Alessandro Tagliabue
Publicado en: Biogeosciences, Edición 22, 2025, Página(s) 4865-4883, ISSN 1726-4189
Editor: Copernicus GmbH
DOI: 10.5194/bg-22-4865-2025

A roadmap for using the UN Decade of Ocean Science for Sustainable Development in support of science, policy, and action.

Autores: Claudet, J., Bopp, L., Cheung, W. W. L., Devillers, R., Escobar-Briones, E., Haugan, P., Heymans, J. H., Masson-Delmotte, V., Matz-Luck, N., Miloslavich, P., Mullineaux, L., Visbeck, M., Watson, R., Zivian, A. M., Ansorge, I., Araujo, M., Arico, S., Bailly, D., Barbière, J., Barnerias, C., Bowler, C., Brun, V., Cazenave, A., Diver, C., Euzen, A., Thierno Gaye, A., Hilmi, N., Ménard, F., Moulin,
Publicado en: One Earth, Edición 1, 2020, Página(s) 123, ISSN 2590-3330
Editor: Cell Press
DOI: 10.1016/j.oneear.2019.10.012

Macroscale patterns of oceanic zooplankton composition and size structure.

Autores: Brandão, M. C., Benedetti, F., Martini, S., Soviadan, Y. D., Irisson, J. O., Romagnan, J. B., Elineau, A., Desnos, C., Jalabert, L., Freire, A. S., Picheral, M., Guidi, L., Gorsky, G., Bowler, C., Karp-Boss, L., Henry, N., de Vargas, C., Sullivan, M. B., Tara Oceans Consortium Coordinators, Stemmann, L. and Lombard, F.
Publicado en: Sci Rep, Edición 11, 2021, Página(s) 15714, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Global Trends in Marine Plankton Diversity across Kingdoms of Life.

Autores: Ibarbalz, Federico M.; Henry, Nicolas; Brandão, Manoela C.; Martini, Séverine; Busseni, Greta; Byrne, Hannah; Coelho, Luis Pedro; Endo, Hisashi; Gasol, Josep M.; Gregory, Ann C.; Mahé, Frédéric; Rigonato, Janaina; Royo-Llonch, Marta; Salazar, Guillem; Sanz-Sáez, Isabel; Scalco, Eleonora; Soviadan, Dodji; Zayed, Ahmed A.; Zingone, Adriana; Labadie, Karine; Ferland, Joannie; Marec, Claudie; Ka
Publicado en: Cell, Edición 3, 2019, Página(s) 12345, ISSN 1097-4172
Editor: Cell Press
DOI: 10.3929/ethz-b-000378196

New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates

Autores: Anna MG Novák Vanclová, Charlotte Nef, Zoltán Füssy, Adél Vancl, Fuhai Liu, Chris Bowler, Richard G Dorrell
Publicado en: EMBO Reports, Edición 25, 2025, Página(s) 1859-1885, ISSN 1469-3178
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s44319-024-00103-y

Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean

Autores: Busseni, G., Caputi, L., Piredda, R., Fremont, P., Mele, B. H., Campese, L., Scalco, E., de Vargas, C., Bowler, C., d'Ovidio, F., Zingone, A., Ribera d’Alcalà, M. Iudicone, D.
Publicado en: Global Ecol. Biogeo., Edición 1, 2020, Página(s) 1-14, ISSN 1466-822X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/geb.13161

Linking satellites to genes with machine learning to estimate phytoplankton community structure from space

Autores: Roy El Hourany, Juan Pierella Karlusich, Lucie Zinger, Hubert Loisel, Marina Levy, Chris Bowler
Publicado en: Ocean Science, Edición 20, 2024, Página(s) 217-239, ISSN 1812-0792
Editor: Copernicus GmbH
DOI: 10.5194/os-20-217-2024

Pan-Arctic plankton community structure and its global connectivity

Autores: Federico M. Ibarbalz, Nicolas Henry, Frédéric Mahé, Mathieu Ardyna, Adriana Zingone, Eleonora Scalco, Connie Lovejoy, Fabien Lombard, Olivier Jaillon, Daniele Iudicone, Shruti Malviya, null null, Matthew B. Sullivan, Samuel Chaffron, Eric Karsenti, Marcel Babin, Emmanuel Boss, Patrick Wincker, Lucie Zinger, Colomban de Vargas, Chris Bowler, Lee Karp-Boss
Publicado en: Elementa: Science of the Anthropocene, Edición 11, 2023, ISSN 2325-1026
Editor: University of California Press
DOI: 10.1525/elementa.2022.00060

Priorities for ocean microbiome research

Autores: Tara Ocean Foundation, Tara Oceans, European Molecular Biology Laboratory (EMBL), European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC). Corresponding author Bowler, C.
Publicado en: Nature Microbiology, Edición 7, 2022, Página(s) 937-947, ISSN 2058-5276
Editor: Springer
DOI: 10.1038/s41564-022-01145-5

Exploration of marine phytoplankton: from their historical appreciation to the omics era.

Autores: Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Publicado en: J Plankton Res, Edición 42, 2020, Página(s) 595-612, ISSN 0142-7873
Editor: Oxford University Press
DOI: 10.1093/plankt/fbaa049

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Autores: Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d’Agata, L., Clayssen, Q., et al.
Publicado en: Cell Genomics, Edición 2, 2022, Página(s) 12345, ISSN 2666-979X
Editor: Cell Press
DOI: 10.1101/2020.10.15.341214

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum

Autores: Zhao, X, Rastogi A., Deton Cabanillas, A. F., Ait Mohamed, O., Cantrel, C., Lombard, B., Murik, O., Genovesio, A., Bowler, C., Bouyer, D., Loew, D., Lin, X., Veluchamy, A., Vieira, F. R. J. and Tirichine, L.
Publicado en: New Phytol, Edición 12, 2021, Página(s) 12345, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.17129

The possible fates of Fragilariopsis cylindrus (polar diatom) cells exposed to prolonged darkness

Autores: Sciandra, T., Forget, M. H., Bruyant, F., Béguin, M., Lacour, T., Bowler, C. and Babin, M.
Publicado en: J Phycol, Edición 12, 2022, Página(s) 12345, ISSN 0022-3646
Editor: Blackwell Publishing Inc.
DOI: 10.1111/jpy.13232

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

Autores: Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron
Publicado en: Nature Communications, Edición 15, 2024, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-024-46374-w

Strengthening global-change science by integrating aeDNA with paleoecoinformatics

Autores: John W. Williams, Trisha L. Spanbauer, Peter D. Heintzman, Jessica Blois, Eric Capo, Simon J. Goring, Marie-Eve Monchamp, Laura Parducci, Jordan M. Von Eggers, Inger Greve Alsos, Chris Bowler, Marco J.L. Coolen, Nicola Cullen, Sarah Crump, Laura Saskia Epp, Antonio Fernandez-Guerra, Eric Grimm, Ulrike Herzschuh, Alessandro Mereghetti, Rachel Sarah Meyer, Kevin Nota, Mikkel Winther Pedersen, Vilma
Publicado en: Trends in Ecology & Evolution, Edición 38, 2025, Página(s) 946-960, ISSN 0169-5347
Editor: Elsevier BV
DOI: 10.1016/j.tree.2023.04.016

Diverse eukaryotic phytoplankton from around the Marquesas Islands documented by combined microscopy and molecular techniques

Autores: Jana Veselá-Strejcová, Eleonora Scalco, Adriana Zingone, Sébastien Colin, Luigi Caputi, Diana Sarno, Jana Nebesářová, Chris Bowler, Julius Lukeš
Publicado en: Protist, Edición 174, 2025, Página(s) 125965, ISSN 1434-4610
Editor: Elsevier BV
DOI: 10.1016/j.protis.2023.125965

Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.

Autores: Hoguin, A., Rastogi, A. and Bowler, C. and Tirichine, L.
Publicado en: Sci Rep, Edición 11, 2021, Página(s) 2954, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-82529-1

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.

Autores: Bulankova, P., Sekulić, M., Jallet, D., Nef, C., van Oosterhout, C., Delmont, T. O., Vercauteren, I., Osuna-Cruz, C. M., Vancaester, E., Mock, T., Sabbe, K., Daboussi, F., Bowler, C., Vyverman, W., Vandepoele, K. and De Veylder, L.
Publicado en: Curr Biol, Edición S0960-9822(21)00672-2, 2021, Página(s) S0960-9822(21)00672-2, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2021.05.013

Contribution of genome-scale metabolic modelling to niche theory

Autores: Régimbeau, A., Budinich, M., Larhlimi, A., Pierella Karlusich, J. J., Aumont, O., Memery, L., Bowler, C. and Eveillard, D.
Publicado en: Ecol Lett, Edición 25, 2022, Página(s) 1352-1364, ISSN 1461-023X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/ele.13954

Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling

Autores: Antoine Régimbeau, Olivier Aumont, Chris Bowler, Lionel Guidi, George A. Jackson, Eric Karsenti, Laurent Memery, Alessandro Tagliabue, Damien Eveillard
Publicado en: Science Advances, Edición 11, 2025, ISSN 2375-2548
Editor: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq3593

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Autores: Juan José Pierella Karlusich; Eric Pelletier; Lucie Zinger; Fabien Lombard; Adriana Zingone; Sébastien Colin; Josep M. Gasol; Richard G. Dorrell; Nicolas Henry; Eleonora Scalco; Silvia G. Acinas; Patrick Wincker; Colomban Vargas; Chris Bowler
Publicado en: https://hal.archives-ouvertes.fr/hal-03559541, Edición 1, 2022, Página(s) 123, ISSN 1755-0998
Editor: Wiley
DOI: 10.1111/1755-0998.13592

Incorporating microbiomes into the One Health Joint Plan of Action

Autores: Estelle Couradeau, Jennifer B. H. Martiny, Fanette Fontaine, Christian Brechot, Marc Bonneville, Karel Callens, null null, Francesco Asnicar, Bill J. Baker, Gabriele Berg, Marc Bonneville, Chris Bowler, Christian Brechot, Karel Callens, Estelle Couradeau, Adam Boyar Carmer, Federica Cattapan, Karine Clement, Karen D. Corbin, Fanette Fontaine, Brooke Hansen, David Himmelgreen, Heribert Hirt, Shen J
Publicado en: mBio, Edición 16, 2025, ISSN 2150-7511
Editor: American Society for Microbiology
DOI: 10.1128/mbio.01456-25

Predicting global distributions of eukaryotic plankton communities from satellite data

Autores: Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, Odette Beluche, Roy El Hourany, null null, Silvia G Acinas, Marcel Babin, Peer Bork, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Eric Karsenti, Fabrice Not, Nicole Poulton,
Publicado en: ISME Communications, Edición 3, 2024, ISSN 2730-6151
Editor: Oxford University Press (OUP)
DOI: 10.1038/s43705-023-00308-7

In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in <scp>Phaeodactylum tricornutum</scp>

Autores: Elena Kazamia, Jan Mach, Jeffrey B. McQuaid, Xia Gao, Tyler H. Coale, Ronald Malych, Jean‐Michel Camadro, Emmanuel Lesuisse, Andrew E. Allen, Chris Bowler, Robert Sutak
Publicado en: Plant Direct, Edición 6, 2023, ISSN 2475-4455
Editor: Wiley
DOI: 10.1002/pld3.472

High Growth Rate of Diatoms Explained by Reduced Carbon Requirement and Low Energy Cost of Silica Deposition

Autores: Keisuke Inomura, Juan José Pierella Karlusich, Stephanie Dutkiewicz, Curtis Deutsch, Paul J. Harrison, Chris Bowler
Publicado en: Microbiology Spectrum, Edición 11, 2023, ISSN 2165-0497
Editor: American Society for Microbiology
DOI: 10.1128/spectrum.03311-22

Coupling imaging and omics in plankton surveys: State-of-the-art, challenges, and future directions

Autores: Pierella Karlusich, J. J., Lombard, F., Irisson, J.-O., Bowler, C. and Foster, R. A.
Publicado en: Frontiers Mar Sci, Edición 9, 2022, Página(s) 878803, ISSN 2296-7745
Editor: Frontiers
DOI: 10.3389/fmars.2022.878803

Probing the diversity of Polycomb and Trithorax proteins in cultured and environmentally sampled microalgae.

Autores: Zhao, X., Deton Cabanillas, A.-F., Veluchamy, A., Bowler, C., Vieira, F. R. J. and Tirichine, L.
Publicado en: Frontiers Mar Sci, Edición 12, 2020, Página(s) 12345, ISSN 2296-7745
Editor: Frontiers
DOI: 10.3389/fmars.2020.00189

Tara Oceans: towards global ocean ecosystems biology.

Autores: Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Peer Bork; Chris Bowler; Tara Oceans Coordinators; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Patrick Wincker; Colomban de Vargas
Publicado en: "Nature Reviews Microbiology, Nature Publishing Group, 2020, 18, pp.428-445. ⟨10.1038/s41579-020-0364-5⟩", Edición 1, 2020, Página(s) 428-445, ISSN 1740-1534
Editor: Springer
DOI: 10.1038/s41579-020-0364-5

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Autores: Royo-Llonch, M., Sánchez, P., Ruiz-González, C., Salazar, G., Pedrós-Alió, C., Sebastián, M., Labadie, K., Paoli, L., Ibarbalz, F. M., Zinger, L., Churcheward, B., Tara Oceans Coordinators, Chaffron, S., Eveillard, D., Karsenti, E., Sunagawa, S., Wincker, P., Karp-Boss, L., Bowler, C. and Acinas, S. G.
Publicado en: Nature Microbiology, Edición 6, 2021, Página(s) 1561-1574, ISSN 2058-5276
Editor: Springer
DOI: 10.1038/s41564-021-00979-9

Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus

Autores: Nathalie Joli, Lorenzo Concia, Karel Mocaer, Julie Guterman, Juliette Laude, Sebastien Guerin, Theo Sciandra, Flavienne Bruyant, Ouardia Ait‐Mohamed, Marine Beguin, Marie‐Helene Forget, Clara Bourbousse, Thomas Lacour, Benjamin Bailleul, Charlotte Nef, Mireille Savoie, Jean‐Eric Tremblay, Douglas A. Campbell, Johann Lavaud, Yannick Schwab, Marcel Babin, Chris Bowler
Publicado en: New Phytologist, Edición 241, 2025, Página(s) 2193-2208, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.19387

Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms: Insights From Tara Oceans.

Autores: Juan José Pierella Karlusich; Juan José Pierella Karlusich; Chris Bowler; Chris Bowler; Haimanti Biswas
Publicado en: Frontiers in Marine Sciences, Edición 5, 2021, Página(s) 657821, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.657821

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Autores: Richard G Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna MG Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez
Publicado en: Life Science Alliance, Edición 6, 2024, Página(s) e202201833, ISSN 2575-1077
Editor: Life Science Alliance, LLC
DOI: 10.26508/lsa.202201833

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Autores: Rastogi, A., Vieira, F. R. J., Deton-Cabanillas, A.-F., Veluchamy, A., Cantrel, C., Wang, G., Vanormelingen, P., Bowler, C., Piganeau, G., Hu, H. and Tirichine, L.
Publicado en: ISME J, Edición 12, 2020, Página(s) 12345, ISSN 1751-7370
Editor: Springer
DOI: 10.1038/s41396-019-0528-3

LncPlankton: a comprehensive database of candidate lncRNAs from marine microbial eukaryotes

Autores: Ahmed Debit, Pierre Vincens, Chris Bowler, Helena Cruz de Carvalho
Publicado en: NAR Genomics and Bioinformatics, Edición 7, 2025, ISSN 2631-9268
Editor: Oxford University Press (OUP)
DOI: 10.1093/nargab/lqaf159

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Autores: Richard G. Dorrell, Adrien Villain, Benoît Perez-Lamarque, Guillemette Audren de Kerdrel, Giselle McCallum, Andrew K. Watson, Ouardia Ait-Mohamed, Adriana Alberti, Erwann Corre, Kyle R. Frischkorn, Juan J. Pierella Karlusich, Eric Pelletier, Hélène Morlon, Chris Bowler, Guillaume Blanc
Publicado en: Proceedings of the National Academy of Sciences, Edición 118/4, 2021, Página(s) e2009974118, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.2009974118

Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.

Autores: Sato, S., Nanjappa, D., Dorrell, R. G., Vieira, F. R. J., Kazamia, E., Tirichine, L., Veluchamy, A., Heilig, R., Aury, J. M., Jaillon, O., Wincker, P., Fussy, Z., Obornik, M., Muñoz-Gómez, S. A., Mann, D. G., Bowler, C. and Zingone, A.
Publicado en: Sci Rep, Edición 10, 2020, Página(s) 9449, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-65941-x

Patterns and drivers of diatom diversity and abundance in the global ocean

Autores: Juan J. Pierella Karlusich, Karen Cosnier, Lucie Zinger, Nicolas Henry, Charlotte Nef, Guillaume Bernard, Eleonora Scalco, Etienne Dvorak, null null, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hi
Publicado en: Nature Communications, Edición 16, 2025, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-025-58027-7

From nets to networks: tools for deciphering phytoplankton metabolic interactions within communities and their global significance

Autores: Charlotte Nef, Juan José Pierella Karlusich, Chris Bowler
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, Edición 379, 2024, ISSN 0962-8436
Editor: Royal Society of London
DOI: 10.1098/rstb.2023.0172

<scp>DiatOmicBase</scp> : a versatile gene‐centered platform for mining functional omics data in diatom research

Autores: Emilie Villar, Nathanaël Zweig, Pierre Vincens, Helena Cruz de Carvalho, Carole Duchene, Shun Liu, Raphael Monteil, Richard G. Dorrell, Michele Fabris, Klaas Vandepoele, Chris Bowler, Angela Falciatore
Publicado en: The Plant Journal, Edición 121, 2026, ISSN 0960-7412
Editor: Blackwell Publishing Inc.
DOI: 10.1111/tpj.70061

Whole-genome scanning reveals selection mechanisms in epipelagic Chaetoceros diatom populations

Autores: Nef, C., Madoui, M.-A., Pelletier, E. and Bowler, C.
Publicado en: BioRxiv, Edición 12, 2022, Página(s) 12345, ISSN 2692-8205
Editor: BioRxiv
DOI: 10.1101/2022.05.19.492674

Global drivers of eukaryotic plankton biogeography in the sunlit ocean.

Autores: Sommeria-Klein, G., Watteaux, R., Ibarbalz, F. M., Pierella Karlusich, J. J., Iudicone, D., Bowler, C. and Morlon, H.
Publicado en: Science, Edición 374, 2021, Página(s) 594-599, ISSN 1095-9203
Editor: AAAS
DOI: 10.1126/science.abb3717

Diatoms Are Selective Segregators in Global Ocean Planktonic Communities.

Autores: Vincent, Flora; Bowler, Chris
Publicado en: mSystems, Vol 5, Iss 1 (2020), Edición 3, 2020, Página(s) 12345, ISSN 1069-5524
Editor: ASM
DOI: 10.1128/msystems.00444-19

Dynamic Relocalization and Divergent Expression of a Major Facilitator Carrier Subfamily in Diatoms

Autores: Shun Liu, Victoria Powell, Shun‐Min Yang, France Lam, Chris Bowler, Miroslav Obornik, Richard G. Dorrell
Publicado en: Physiologia Plantarum, Edición 177, 2025, ISSN 0031-9317
Editor: Blackwell Publishing Inc.
DOI: 10.1111/ppl.70355

Molecular biology for green recovery-A call for action.

Autores: Rodríguez-Martínez, M., Nielsen, J., Dupont, S., Vamathevan, J., Glover, B. J., Crosswell, L. C., Rouse, B., Luisi, B. F., Bowler, C., Gasser, S. M., Arendt, D., Erb, T. J., de Lorenzo, V., Heard, E. and Patil, K. R.
Publicado en: PLoS Biol, Edición 20, 2022, Página(s) e3001623, ISSN 1544-9173
Editor: Public Library of Science
DOI: 10.1371/journal.pbio.3001623

Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

Autores: Dorrell, R. G., Kuo, A., Füssy, Z., Richardson, E., Salamov, A., Zarevski, N., Freyria, N. J., Ibarbalz, F. M., Jenkins, J., Pierella Karlusich, J. J., Steindorff, A. S., Edgar, R. E., Handley, L., Lail, K., Lipzen, A., Lombard, V., McFarlane, J., Nef, C., Novák Vanclová, A. M. G., Peng, Y., Plott, C., Potvin, M., Rocha Jimenez Vieira, F., Barry, K., Dacks, J. B., de Vargas, C., Henrissat, B.,
Publicado en: BioRxiv, Edición 1, 2022, Página(s) 12345, ISSN 2692-8205
Editor: BioRxiv
DOI: 10.1101/2021.07.31.454568

A Global Ocean Opal Ballasting–Silicate Relationship

Autores: B. B. Cael, C. Mark Moore, Joe Guest, Tereza Jarníková, Colleen B. Mouw, Chris Bowler, Edward Mawji, Stephanie A. Henson, Corinne Le Quéré
Publicado en: Geophysical Research Letters, Edición 51, 2025, ISSN 0094-8276
Editor: American Geophysical Union
DOI: 10.1029/2024gl110225

Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics

Autores: Armbrecht, L., Eisenhofer, R., Utge, J., Sibert, E. C., Rocha, F., Ward, R., Pierella Karlusich, J. J., Tirichine, L., Norris, R., Summers, M. and Bowler, C.
Publicado en: ISME Comm, Edición 12, 2021, Página(s) 12345, ISSN 2730-6151
Editor: Springer
DOI: 10.1038/s43705-021-00070-8

Metabolic imaging of Fragilariopsis cylindrus in polar night conditions using full-field optical transmission tomography (FFOTT)

Autores: Nathalie Joli, Claude Boccara, Benjamin Bailleul, Chris Bowler, Martine Boccara
Publicado en: Biomedical Optics Express, Edición 17, 2026, Página(s) 1540, ISSN 2156-7085
Editor: The Optical Society
DOI: 10.1364/boe.570645

Comparison of sedimentary ancient DNA (sedaDNA) extraction and shotgun metagenomic library preparation techniques

Autores: Mathilde Bourreau, Prashasti Singh, Linda Armbrecht, Jose Utge, Chris Bowler, Manon Sabourdy, Carlota Escutia, Juliane Müller, Fernando Bohoyo, Xavier Crosta, Johan Etourneau
Publicado en: Marine Micropaleontology, Edición 200, 2025, Página(s) 102498, ISSN 0377-8398
Editor: Elsevier BV
DOI: 10.1016/j.marmicro.2025.102498

Complex response of the Chlorarachniophyte Bigelowiella natans to iron availability

Autores: Kotabova, E., Malych, R., Pierella Karlusich, J. J., Kazamia, E., Eichner, M., Mach, J., Lesuisse, E., Bowler, C., Prášil, O. and Sutak, R.
Publicado en: mSys, Edición 6, 2021, Página(s) e00738-00720, ISSN 1823-6782
Editor: Akademi Sains Malaysia
DOI: 10.1128/msystems.00738-20

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Autores: Delmont, T. O., Pierella Karlusich, J. J., Veseli, I., Fuessel, J., Eren, A. M., Foster, R. A., Bowler, C., Wincker, P. and Pelletier, E.
Publicado en: ISME J, Edición 16, 2021, Página(s) 927-936, ISSN 1751-7370
Editor: Springer
DOI: 10.1038/s41396-021-01135-1

Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid

Autores: Richard G Dorrell, Youjun Zhang, Yue Liang, Nolwenn Gueguen, Tomomi Nonoyama, Dany Croteau, Mathias Penot-Raquin, Sandrine Adiba, Benjamin Bailleul, Valérie Gros, Juan José Pierella Karlusich, Nathanaël Zweig, Alisdair R Fernie, Juliette Jouhet, Eric Maréchal, Chris Bowler
Publicado en: The Plant Cell, Edición 36, 2024, Página(s) 3584-3610, ISSN 1040-4651
Editor: American Society of Plant Biologists
DOI: 10.1093/plcell/koae168

Diatom phytochromes integrate the underwater light spectrum to sense depth

Autores: Carole Duchêne, Jean-Pierre Bouly, Juan José Pierella Karlusich, Emeline Vernay, Julien Sellés, Benjamin Bailleul, Chris Bowler, Maurizio Ribera d’Alcalà, Angela Falciatore, Marianne Jaubert
Publicado en: Nature, Edición 637, 2025, Página(s) 691-697, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-024-08301-3

Global identification of a marine diatom long noncoding natural antisense transcripts (NATs) and their response to phosphate fluctuations.

Autores: Cruz de Carvalho, M. H. and Bowler, C.
Publicado en: Sci Rep, Edición 10, 2020, Página(s) 14110, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-71002-0

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Autores: Salazar, Guillem; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta; Roux, Simon; Sánchez, Pablo; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Fe
Publicado en: Cell, Edición 3, 2019, Página(s) 12345, ISSN 1097-4172
Editor: Cell Press
DOI: 10.1016/j.cell.2019.10.014

PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum.

Autores: Ouardia Ait-Mohamed; Anna M. G. Novák Vanclová; Nathalie Joli; Yue Liang; Xue Zhao; Xue Zhao; Auguste Genovesio; Leila Tirichine; Leila Tirichine; Chris Bowler; Richard G. Dorrell
Publicado en: Frontiers in Plant Science, Vol 11 (2020), Edición 3, 2020, Página(s) 12345, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.590949

Quantitative metagenomics for marine prokaryotes and photosynthetic eukaryotes

Autores: Qicheng Bei, Nathan L R Williams, Laura E Furtado, Daria Di Blasi, Jelani Williams, Vanda Brotas, Glen Tarran, Andrew P Rees, Chris Bowler, Jed A Fuhrman
Publicado en: ISME Communications, Edición 5, 2025, ISSN 2730-6151
Editor: Oxford University Press (OUP)
DOI: 10.1093/ismeco/ycaf131

Phytoplankton in the Tara Ocean

Autores: Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Publicado en: Annu. Rev. Mar. Sci., Edición 12, 2020, Página(s) 233-265, ISSN 1941-1405
Editor: Annual Reviews Inc.
DOI: 10.1146/annurev-marine-010419-010706

Environmental vulnerability of the global ocean epipelagic plankton community interactome

Autores: Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nicolas Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Tara Oceans Coordinators; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan;
Publicado en: https://hal.archives-ouvertes.fr/hal-03458184, Edición 2, 2021, Página(s) 12345, ISSN 2375-2548
Editor: AAAS
DOI: 10.1126/sciadv.abg1921

Iron metabolism strategies in diatoms

Autores: Gao, X., Bowler, C. and Kazamia, E.
Publicado en: J Exp Bot, Edición 72, 2021, Página(s) 2165-2180, ISSN 0022-0957
Editor: Oxford University Press
DOI: 10.1093/jxb/eraa575

Biosynthetic potential of the global ocean microbiome

Autores: Paoli, L., Ruscheweyh, H.-J., Forneris, C. C., Hubrich. F., Kautsar, S., Bhushan, A., Lotti, A., Clayssen, Q., Salazar, G., Milanese, A., Carlström, C. I., Papadopoulou, C., Gehrig, D., Karasikov, M., Mustafa, H., Larralde, M., Carroll, L. M., Sánchez, P., Zayed, A. A., Cronin, D. R., Acinas, S. G., Bork, P., Bowler, C., Delmont, T. O., Gasol, J. M., Gossert, A. D., Kahles, A., Sullivan, M. B.,
Publicado en: Nature, Edición 607, 2022, Página(s) 111-118, ISSN 1476-4687
Editor: Springer
DOI: 10.1038/s41586-022-04862-3

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Autores: Juan José Pierella Karlusich; Eric Pelletier; Fabien Lombard; Madeline Carsique; Etienne Dvorak; Sébastien Colin; Marc Picheral; Francisco M. Cornejo-Castillo; Silvia G. Acinas; Rainer Pepperkok; Eric Karsenti; Colomban de Vargas; Patrick Wincker; Chris Bowler; Rachel A Foster
Publicado en: Nature Communications, Edición 1, 2021, Página(s) 12345, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1101/2020.10.17.343731

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

Autores: Kurt H. Kjær, Mikkel Winther Pedersen, Bianca De Sanctis, Binia De Cahsan, Thorfinn S. Korneliussen, Christian S. Michelsen, Karina K. Sand, Stanislav Jelavić, Anthony H. Ruter, Astrid M. A. Schmidt, Kristian K. Kjeldsen, Alexey S. Tesakov, Ian Snowball, John C. Gosse, Inger G. Alsos, Yucheng Wang, Christoph Dockter, Magnus Rasmussen, Morten E. Jørgensen, Birgitte Skadhauge, Ana Prohaska, Jeppe
Publicado en: Nature, Edición 612, 2024, Página(s) 283-291, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-022-05453-y

Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros

Autores: Charlotte Nef, Mohammed-Amin Madoui, Éric Pelletier, Chris Bowler
Publicado en: PLOS Biology, Edición 20, 2023, Página(s) e3001893, ISSN 1545-7885
Editor: Public Library of Science (PLoS)
DOI: 10.1371/journal.pbio.3001893

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