Untangling eco-evolutionary impacts on diatom genomes over timescales relevant to current climate change

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Relative enrichment of ammonium and its impacts on open-ocean phytoplankton community composition under a high-emissions scenario

Author(s): Pearse J. Buchanan, Juan J. Pierella Karlusich, Robyn E. Tuerena, Roxana Shafiee, E. Malcolm S. Woodward, Chris Bowler, Alessandro Tagliabue
Published in: Biogeosciences, Issue 22, 2025, Page(s) 4865-4883, ISSN 1726-4189
Publisher: Copernicus GmbH
DOI: 10.5194/bg-22-4865-2025

A roadmap for using the UN Decade of Ocean Science for Sustainable Development in support of science, policy, and action.

Author(s): Claudet, J., Bopp, L., Cheung, W. W. L., Devillers, R., Escobar-Briones, E., Haugan, P., Heymans, J. H., Masson-Delmotte, V., Matz-Luck, N., Miloslavich, P., Mullineaux, L., Visbeck, M., Watson, R., Zivian, A. M., Ansorge, I., Araujo, M., Arico, S., Bailly, D., Barbière, J., Barnerias, C., Bowler, C., Brun, V., Cazenave, A., Diver, C., Euzen, A., Thierno Gaye, A., Hilmi, N., Ménard, F., Moulin,
Published in: One Earth, Issue 1, 2020, Page(s) 123, ISSN 2590-3330
Publisher: Cell Press
DOI: 10.1016/j.oneear.2019.10.012

Macroscale patterns of oceanic zooplankton composition and size structure.

Author(s): Brandão, M. C., Benedetti, F., Martini, S., Soviadan, Y. D., Irisson, J. O., Romagnan, J. B., Elineau, A., Desnos, C., Jalabert, L., Freire, A. S., Picheral, M., Guidi, L., Gorsky, G., Bowler, C., Karp-Boss, L., Henry, N., de Vargas, C., Sullivan, M. B., Tara Oceans Consortium Coordinators, Stemmann, L. and Lombard, F.
Published in: Sci Rep, Issue 11, 2021, Page(s) 15714, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Global Trends in Marine Plankton Diversity across Kingdoms of Life.

Author(s): Ibarbalz, Federico M.; Henry, Nicolas; Brandão, Manoela C.; Martini, Séverine; Busseni, Greta; Byrne, Hannah; Coelho, Luis Pedro; Endo, Hisashi; Gasol, Josep M.; Gregory, Ann C.; Mahé, Frédéric; Rigonato, Janaina; Royo-Llonch, Marta; Salazar, Guillem; Sanz-Sáez, Isabel; Scalco, Eleonora; Soviadan, Dodji; Zayed, Ahmed A.; Zingone, Adriana; Labadie, Karine; Ferland, Joannie; Marec, Claudie; Ka
Published in: Cell, Issue 3, 2019, Page(s) 12345, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.3929/ethz-b-000378196

New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates

Author(s): Anna MG Novák Vanclová, Charlotte Nef, Zoltán Füssy, Adél Vancl, Fuhai Liu, Chris Bowler, Richard G Dorrell
Published in: EMBO Reports, Issue 25, 2025, Page(s) 1859-1885, ISSN 1469-3178
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s44319-024-00103-y

Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean

Author(s): Busseni, G., Caputi, L., Piredda, R., Fremont, P., Mele, B. H., Campese, L., Scalco, E., de Vargas, C., Bowler, C., d'Ovidio, F., Zingone, A., Ribera d’Alcalà, M. Iudicone, D.
Published in: Global Ecol. Biogeo., Issue 1, 2020, Page(s) 1-14, ISSN 1466-822X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/geb.13161

Linking satellites to genes with machine learning to estimate phytoplankton community structure from space

Author(s): Roy El Hourany, Juan Pierella Karlusich, Lucie Zinger, Hubert Loisel, Marina Levy, Chris Bowler
Published in: Ocean Science, Issue 20, 2024, Page(s) 217-239, ISSN 1812-0792
Publisher: Copernicus GmbH
DOI: 10.5194/os-20-217-2024

Pan-Arctic plankton community structure and its global connectivity

Author(s): Federico M. Ibarbalz, Nicolas Henry, Frédéric Mahé, Mathieu Ardyna, Adriana Zingone, Eleonora Scalco, Connie Lovejoy, Fabien Lombard, Olivier Jaillon, Daniele Iudicone, Shruti Malviya, null null, Matthew B. Sullivan, Samuel Chaffron, Eric Karsenti, Marcel Babin, Emmanuel Boss, Patrick Wincker, Lucie Zinger, Colomban de Vargas, Chris Bowler, Lee Karp-Boss
Published in: Elementa: Science of the Anthropocene, Issue 11, 2023, ISSN 2325-1026
Publisher: University of California Press
DOI: 10.1525/elementa.2022.00060

Priorities for ocean microbiome research

Author(s): Tara Ocean Foundation, Tara Oceans, European Molecular Biology Laboratory (EMBL), European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC). Corresponding author Bowler, C.
Published in: Nature Microbiology, Issue 7, 2022, Page(s) 937-947, ISSN 2058-5276
Publisher: Springer
DOI: 10.1038/s41564-022-01145-5

Exploration of marine phytoplankton: from their historical appreciation to the omics era.

Author(s): Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Published in: J Plankton Res, Issue 42, 2020, Page(s) 595-612, ISSN 0142-7873
Publisher: Oxford University Press
DOI: 10.1093/plankt/fbaa049

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Author(s): Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d’Agata, L., Clayssen, Q., et al.
Published in: Cell Genomics, Issue 2, 2022, Page(s) 12345, ISSN 2666-979X
Publisher: Cell Press
DOI: 10.1101/2020.10.15.341214

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum

Author(s): Zhao, X, Rastogi A., Deton Cabanillas, A. F., Ait Mohamed, O., Cantrel, C., Lombard, B., Murik, O., Genovesio, A., Bowler, C., Bouyer, D., Loew, D., Lin, X., Veluchamy, A., Vieira, F. R. J. and Tirichine, L.
Published in: New Phytol, Issue 12, 2021, Page(s) 12345, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17129

The possible fates of Fragilariopsis cylindrus (polar diatom) cells exposed to prolonged darkness

Author(s): Sciandra, T., Forget, M. H., Bruyant, F., Béguin, M., Lacour, T., Bowler, C. and Babin, M.
Published in: J Phycol, Issue 12, 2022, Page(s) 12345, ISSN 0022-3646
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jpy.13232

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

Author(s): Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron
Published in: Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-46374-w

Strengthening global-change science by integrating aeDNA with paleoecoinformatics

Author(s): John W. Williams, Trisha L. Spanbauer, Peter D. Heintzman, Jessica Blois, Eric Capo, Simon J. Goring, Marie-Eve Monchamp, Laura Parducci, Jordan M. Von Eggers, Inger Greve Alsos, Chris Bowler, Marco J.L. Coolen, Nicola Cullen, Sarah Crump, Laura Saskia Epp, Antonio Fernandez-Guerra, Eric Grimm, Ulrike Herzschuh, Alessandro Mereghetti, Rachel Sarah Meyer, Kevin Nota, Mikkel Winther Pedersen, Vilma
Published in: Trends in Ecology & Evolution, Issue 38, 2025, Page(s) 946-960, ISSN 0169-5347
Publisher: Elsevier BV
DOI: 10.1016/j.tree.2023.04.016

Diverse eukaryotic phytoplankton from around the Marquesas Islands documented by combined microscopy and molecular techniques

Author(s): Jana Veselá-Strejcová, Eleonora Scalco, Adriana Zingone, Sébastien Colin, Luigi Caputi, Diana Sarno, Jana Nebesářová, Chris Bowler, Julius Lukeš
Published in: Protist, Issue 174, 2025, Page(s) 125965, ISSN 1434-4610
Publisher: Elsevier BV
DOI: 10.1016/j.protis.2023.125965

Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.

Author(s): Hoguin, A., Rastogi, A. and Bowler, C. and Tirichine, L.
Published in: Sci Rep, Issue 11, 2021, Page(s) 2954, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-82529-1

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.

Author(s): Bulankova, P., Sekulić, M., Jallet, D., Nef, C., van Oosterhout, C., Delmont, T. O., Vercauteren, I., Osuna-Cruz, C. M., Vancaester, E., Mock, T., Sabbe, K., Daboussi, F., Bowler, C., Vyverman, W., Vandepoele, K. and De Veylder, L.
Published in: Curr Biol, Issue S0960-9822(21)00672-2, 2021, Page(s) S0960-9822(21)00672-2, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.05.013

Contribution of genome-scale metabolic modelling to niche theory

Author(s): Régimbeau, A., Budinich, M., Larhlimi, A., Pierella Karlusich, J. J., Aumont, O., Memery, L., Bowler, C. and Eveillard, D.
Published in: Ecol Lett, Issue 25, 2022, Page(s) 1352-1364, ISSN 1461-023X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ele.13954

Unveiling the link between phytoplankton molecular physiology and biogeochemical cycling via genome-scale modeling

Author(s): Antoine Régimbeau, Olivier Aumont, Chris Bowler, Lionel Guidi, George A. Jackson, Eric Karsenti, Laurent Memery, Alessandro Tagliabue, Damien Eveillard
Published in: Science Advances, Issue 11, 2025, ISSN 2375-2548
Publisher: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq3593

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Author(s): Juan José Pierella Karlusich; Eric Pelletier; Lucie Zinger; Fabien Lombard; Adriana Zingone; Sébastien Colin; Josep M. Gasol; Richard G. Dorrell; Nicolas Henry; Eleonora Scalco; Silvia G. Acinas; Patrick Wincker; Colomban Vargas; Chris Bowler
Published in: https://hal.archives-ouvertes.fr/hal-03559541, Issue 1, 2022, Page(s) 123, ISSN 1755-0998
Publisher: Wiley
DOI: 10.1111/1755-0998.13592

Incorporating microbiomes into the One Health Joint Plan of Action

Author(s): Estelle Couradeau, Jennifer B. H. Martiny, Fanette Fontaine, Christian Brechot, Marc Bonneville, Karel Callens, null null, Francesco Asnicar, Bill J. Baker, Gabriele Berg, Marc Bonneville, Chris Bowler, Christian Brechot, Karel Callens, Estelle Couradeau, Adam Boyar Carmer, Federica Cattapan, Karine Clement, Karen D. Corbin, Fanette Fontaine, Brooke Hansen, David Himmelgreen, Heribert Hirt, Shen J
Published in: mBio, Issue 16, 2025, ISSN 2150-7511
Publisher: American Society for Microbiology
DOI: 10.1128/mbio.01456-25

Predicting global distributions of eukaryotic plankton communities from satellite data

Author(s): Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, Odette Beluche, Roy El Hourany, null null, Silvia G Acinas, Marcel Babin, Peer Bork, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Eric Karsenti, Fabrice Not, Nicole Poulton,
Published in: ISME Communications, Issue 3, 2024, ISSN 2730-6151
Publisher: Oxford University Press (OUP)
DOI: 10.1038/s43705-023-00308-7

In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in <scp>Phaeodactylum tricornutum</scp>

Author(s): Elena Kazamia, Jan Mach, Jeffrey B. McQuaid, Xia Gao, Tyler H. Coale, Ronald Malych, Jean‐Michel Camadro, Emmanuel Lesuisse, Andrew E. Allen, Chris Bowler, Robert Sutak
Published in: Plant Direct, Issue 6, 2023, ISSN 2475-4455
Publisher: Wiley
DOI: 10.1002/pld3.472

High Growth Rate of Diatoms Explained by Reduced Carbon Requirement and Low Energy Cost of Silica Deposition

Author(s): Keisuke Inomura, Juan José Pierella Karlusich, Stephanie Dutkiewicz, Curtis Deutsch, Paul J. Harrison, Chris Bowler
Published in: Microbiology Spectrum, Issue 11, 2023, ISSN 2165-0497
Publisher: American Society for Microbiology
DOI: 10.1128/spectrum.03311-22

Coupling imaging and omics in plankton surveys: State-of-the-art, challenges, and future directions

Author(s): Pierella Karlusich, J. J., Lombard, F., Irisson, J.-O., Bowler, C. and Foster, R. A.
Published in: Frontiers Mar Sci, Issue 9, 2022, Page(s) 878803, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2022.878803

Probing the diversity of Polycomb and Trithorax proteins in cultured and environmentally sampled microalgae.

Author(s): Zhao, X., Deton Cabanillas, A.-F., Veluchamy, A., Bowler, C., Vieira, F. R. J. and Tirichine, L.
Published in: Frontiers Mar Sci, Issue 12, 2020, Page(s) 12345, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2020.00189

Tara Oceans: towards global ocean ecosystems biology.

Author(s): Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Peer Bork; Chris Bowler; Tara Oceans Coordinators; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Patrick Wincker; Colomban de Vargas
Published in: "Nature Reviews Microbiology, Nature Publishing Group, 2020, 18, pp.428-445. ⟨10.1038/s41579-020-0364-5⟩", Issue 1, 2020, Page(s) 428-445, ISSN 1740-1534
Publisher: Springer
DOI: 10.1038/s41579-020-0364-5

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Author(s): Royo-Llonch, M., Sánchez, P., Ruiz-González, C., Salazar, G., Pedrós-Alió, C., Sebastián, M., Labadie, K., Paoli, L., Ibarbalz, F. M., Zinger, L., Churcheward, B., Tara Oceans Coordinators, Chaffron, S., Eveillard, D., Karsenti, E., Sunagawa, S., Wincker, P., Karp-Boss, L., Bowler, C. and Acinas, S. G.
Published in: Nature Microbiology, Issue 6, 2021, Page(s) 1561-1574, ISSN 2058-5276
Publisher: Springer
DOI: 10.1038/s41564-021-00979-9

Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus

Author(s): Nathalie Joli, Lorenzo Concia, Karel Mocaer, Julie Guterman, Juliette Laude, Sebastien Guerin, Theo Sciandra, Flavienne Bruyant, Ouardia Ait‐Mohamed, Marine Beguin, Marie‐Helene Forget, Clara Bourbousse, Thomas Lacour, Benjamin Bailleul, Charlotte Nef, Mireille Savoie, Jean‐Eric Tremblay, Douglas A. Campbell, Johann Lavaud, Yannick Schwab, Marcel Babin, Chris Bowler
Published in: New Phytologist, Issue 241, 2025, Page(s) 2193-2208, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.19387

Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms: Insights From Tara Oceans.

Author(s): Juan José Pierella Karlusich; Juan José Pierella Karlusich; Chris Bowler; Chris Bowler; Haimanti Biswas
Published in: Frontiers in Marine Sciences, Issue 5, 2021, Page(s) 657821, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.657821

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Author(s): Richard G Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna MG Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez
Published in: Life Science Alliance, Issue 6, 2024, Page(s) e202201833, ISSN 2575-1077
Publisher: Life Science Alliance, LLC
DOI: 10.26508/lsa.202201833

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Author(s): Rastogi, A., Vieira, F. R. J., Deton-Cabanillas, A.-F., Veluchamy, A., Cantrel, C., Wang, G., Vanormelingen, P., Bowler, C., Piganeau, G., Hu, H. and Tirichine, L.
Published in: ISME J, Issue 12, 2020, Page(s) 12345, ISSN 1751-7370
Publisher: Springer
DOI: 10.1038/s41396-019-0528-3

LncPlankton: a comprehensive database of candidate lncRNAs from marine microbial eukaryotes

Author(s): Ahmed Debit, Pierre Vincens, Chris Bowler, Helena Cruz de Carvalho
Published in: NAR Genomics and Bioinformatics, Issue 7, 2025, ISSN 2631-9268
Publisher: Oxford University Press (OUP)
DOI: 10.1093/nargab/lqaf159

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Author(s): Richard G. Dorrell, Adrien Villain, Benoît Perez-Lamarque, Guillemette Audren de Kerdrel, Giselle McCallum, Andrew K. Watson, Ouardia Ait-Mohamed, Adriana Alberti, Erwann Corre, Kyle R. Frischkorn, Juan J. Pierella Karlusich, Eric Pelletier, Hélène Morlon, Chris Bowler, Guillaume Blanc
Published in: Proceedings of the National Academy of Sciences, Issue 118/4, 2021, Page(s) e2009974118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2009974118

Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.

Author(s): Sato, S., Nanjappa, D., Dorrell, R. G., Vieira, F. R. J., Kazamia, E., Tirichine, L., Veluchamy, A., Heilig, R., Aury, J. M., Jaillon, O., Wincker, P., Fussy, Z., Obornik, M., Muñoz-Gómez, S. A., Mann, D. G., Bowler, C. and Zingone, A.
Published in: Sci Rep, Issue 10, 2020, Page(s) 9449, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-65941-x

Patterns and drivers of diatom diversity and abundance in the global ocean

Author(s): Juan J. Pierella Karlusich, Karen Cosnier, Lucie Zinger, Nicolas Henry, Charlotte Nef, Guillaume Bernard, Eleonora Scalco, Etienne Dvorak, null null, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hi
Published in: Nature Communications, Issue 16, 2025, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-025-58027-7

From nets to networks: tools for deciphering phytoplankton metabolic interactions within communities and their global significance

Author(s): Charlotte Nef, Juan José Pierella Karlusich, Chris Bowler
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 379, 2024, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2023.0172

<scp>DiatOmicBase</scp> : a versatile gene‐centered platform for mining functional omics data in diatom research

Author(s): Emilie Villar, Nathanaël Zweig, Pierre Vincens, Helena Cruz de Carvalho, Carole Duchene, Shun Liu, Raphael Monteil, Richard G. Dorrell, Michele Fabris, Klaas Vandepoele, Chris Bowler, Angela Falciatore
Published in: The Plant Journal, Issue 121, 2026, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.70061

Whole-genome scanning reveals selection mechanisms in epipelagic Chaetoceros diatom populations

Author(s): Nef, C., Madoui, M.-A., Pelletier, E. and Bowler, C.
Published in: BioRxiv, Issue 12, 2022, Page(s) 12345, ISSN 2692-8205
Publisher: BioRxiv
DOI: 10.1101/2022.05.19.492674

Global drivers of eukaryotic plankton biogeography in the sunlit ocean.

Author(s): Sommeria-Klein, G., Watteaux, R., Ibarbalz, F. M., Pierella Karlusich, J. J., Iudicone, D., Bowler, C. and Morlon, H.
Published in: Science, Issue 374, 2021, Page(s) 594-599, ISSN 1095-9203
Publisher: AAAS
DOI: 10.1126/science.abb3717

Diatoms Are Selective Segregators in Global Ocean Planktonic Communities.

Author(s): Vincent, Flora; Bowler, Chris
Published in: mSystems, Vol 5, Iss 1 (2020), Issue 3, 2020, Page(s) 12345, ISSN 1069-5524
Publisher: ASM
DOI: 10.1128/msystems.00444-19

Dynamic Relocalization and Divergent Expression of a Major Facilitator Carrier Subfamily in Diatoms

Author(s): Shun Liu, Victoria Powell, Shun‐Min Yang, France Lam, Chris Bowler, Miroslav Obornik, Richard G. Dorrell
Published in: Physiologia Plantarum, Issue 177, 2025, ISSN 0031-9317
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppl.70355

Molecular biology for green recovery-A call for action.

Author(s): Rodríguez-Martínez, M., Nielsen, J., Dupont, S., Vamathevan, J., Glover, B. J., Crosswell, L. C., Rouse, B., Luisi, B. F., Bowler, C., Gasser, S. M., Arendt, D., Erb, T. J., de Lorenzo, V., Heard, E. and Patil, K. R.
Published in: PLoS Biol, Issue 20, 2022, Page(s) e3001623, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3001623

Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

Author(s): Dorrell, R. G., Kuo, A., Füssy, Z., Richardson, E., Salamov, A., Zarevski, N., Freyria, N. J., Ibarbalz, F. M., Jenkins, J., Pierella Karlusich, J. J., Steindorff, A. S., Edgar, R. E., Handley, L., Lail, K., Lipzen, A., Lombard, V., McFarlane, J., Nef, C., Novák Vanclová, A. M. G., Peng, Y., Plott, C., Potvin, M., Rocha Jimenez Vieira, F., Barry, K., Dacks, J. B., de Vargas, C., Henrissat, B.,
Published in: BioRxiv, Issue 1, 2022, Page(s) 12345, ISSN 2692-8205
Publisher: BioRxiv
DOI: 10.1101/2021.07.31.454568

A Global Ocean Opal Ballasting–Silicate Relationship

Author(s): B. B. Cael, C. Mark Moore, Joe Guest, Tereza Jarníková, Colleen B. Mouw, Chris Bowler, Edward Mawji, Stephanie A. Henson, Corinne Le Quéré
Published in: Geophysical Research Letters, Issue 51, 2025, ISSN 0094-8276
Publisher: American Geophysical Union
DOI: 10.1029/2024gl110225

Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics

Author(s): Armbrecht, L., Eisenhofer, R., Utge, J., Sibert, E. C., Rocha, F., Ward, R., Pierella Karlusich, J. J., Tirichine, L., Norris, R., Summers, M. and Bowler, C.
Published in: ISME Comm, Issue 12, 2021, Page(s) 12345, ISSN 2730-6151
Publisher: Springer
DOI: 10.1038/s43705-021-00070-8

Metabolic imaging of Fragilariopsis cylindrus in polar night conditions using full-field optical transmission tomography (FFOTT)

Author(s): Nathalie Joli, Claude Boccara, Benjamin Bailleul, Chris Bowler, Martine Boccara
Published in: Biomedical Optics Express, Issue 17, 2026, Page(s) 1540, ISSN 2156-7085
Publisher: The Optical Society
DOI: 10.1364/boe.570645

Comparison of sedimentary ancient DNA (sedaDNA) extraction and shotgun metagenomic library preparation techniques

Author(s): Mathilde Bourreau, Prashasti Singh, Linda Armbrecht, Jose Utge, Chris Bowler, Manon Sabourdy, Carlota Escutia, Juliane Müller, Fernando Bohoyo, Xavier Crosta, Johan Etourneau
Published in: Marine Micropaleontology, Issue 200, 2025, Page(s) 102498, ISSN 0377-8398
Publisher: Elsevier BV
DOI: 10.1016/j.marmicro.2025.102498

Complex response of the Chlorarachniophyte Bigelowiella natans to iron availability

Author(s): Kotabova, E., Malych, R., Pierella Karlusich, J. J., Kazamia, E., Eichner, M., Mach, J., Lesuisse, E., Bowler, C., Prášil, O. and Sutak, R.
Published in: mSys, Issue 6, 2021, Page(s) e00738-00720, ISSN 1823-6782
Publisher: Akademi Sains Malaysia
DOI: 10.1128/msystems.00738-20

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Author(s): Delmont, T. O., Pierella Karlusich, J. J., Veseli, I., Fuessel, J., Eren, A. M., Foster, R. A., Bowler, C., Wincker, P. and Pelletier, E.
Published in: ISME J, Issue 16, 2021, Page(s) 927-936, ISSN 1751-7370
Publisher: Springer
DOI: 10.1038/s41396-021-01135-1

Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid

Author(s): Richard G Dorrell, Youjun Zhang, Yue Liang, Nolwenn Gueguen, Tomomi Nonoyama, Dany Croteau, Mathias Penot-Raquin, Sandrine Adiba, Benjamin Bailleul, Valérie Gros, Juan José Pierella Karlusich, Nathanaël Zweig, Alisdair R Fernie, Juliette Jouhet, Eric Maréchal, Chris Bowler
Published in: The Plant Cell, Issue 36, 2024, Page(s) 3584-3610, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1093/plcell/koae168

Diatom phytochromes integrate the underwater light spectrum to sense depth

Author(s): Carole Duchêne, Jean-Pierre Bouly, Juan José Pierella Karlusich, Emeline Vernay, Julien Sellés, Benjamin Bailleul, Chris Bowler, Maurizio Ribera d’Alcalà, Angela Falciatore, Marianne Jaubert
Published in: Nature, Issue 637, 2025, Page(s) 691-697, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-024-08301-3

Global identification of a marine diatom long noncoding natural antisense transcripts (NATs) and their response to phosphate fluctuations.

Author(s): Cruz de Carvalho, M. H. and Bowler, C.
Published in: Sci Rep, Issue 10, 2020, Page(s) 14110, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-71002-0

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Author(s): Salazar, Guillem; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta; Roux, Simon; Sánchez, Pablo; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Fe
Published in: Cell, Issue 3, 2019, Page(s) 12345, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.1016/j.cell.2019.10.014

PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum.

Author(s): Ouardia Ait-Mohamed; Anna M. G. Novák Vanclová; Nathalie Joli; Yue Liang; Xue Zhao; Xue Zhao; Auguste Genovesio; Leila Tirichine; Leila Tirichine; Chris Bowler; Richard G. Dorrell
Published in: Frontiers in Plant Science, Vol 11 (2020), Issue 3, 2020, Page(s) 12345, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.590949

Quantitative metagenomics for marine prokaryotes and photosynthetic eukaryotes

Author(s): Qicheng Bei, Nathan L R Williams, Laura E Furtado, Daria Di Blasi, Jelani Williams, Vanda Brotas, Glen Tarran, Andrew P Rees, Chris Bowler, Jed A Fuhrman
Published in: ISME Communications, Issue 5, 2025, ISSN 2730-6151
Publisher: Oxford University Press (OUP)
DOI: 10.1093/ismeco/ycaf131

Phytoplankton in the Tara Ocean

Author(s): Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Published in: Annu. Rev. Mar. Sci., Issue 12, 2020, Page(s) 233-265, ISSN 1941-1405
Publisher: Annual Reviews Inc.
DOI: 10.1146/annurev-marine-010419-010706

Environmental vulnerability of the global ocean epipelagic plankton community interactome

Author(s): Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nicolas Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Tara Oceans Coordinators; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan;
Published in: https://hal.archives-ouvertes.fr/hal-03458184, Issue 2, 2021, Page(s) 12345, ISSN 2375-2548
Publisher: AAAS
DOI: 10.1126/sciadv.abg1921

Iron metabolism strategies in diatoms

Author(s): Gao, X., Bowler, C. and Kazamia, E.
Published in: J Exp Bot, Issue 72, 2021, Page(s) 2165-2180, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa575

Biosynthetic potential of the global ocean microbiome

Author(s): Paoli, L., Ruscheweyh, H.-J., Forneris, C. C., Hubrich. F., Kautsar, S., Bhushan, A., Lotti, A., Clayssen, Q., Salazar, G., Milanese, A., Carlström, C. I., Papadopoulou, C., Gehrig, D., Karasikov, M., Mustafa, H., Larralde, M., Carroll, L. M., Sánchez, P., Zayed, A. A., Cronin, D. R., Acinas, S. G., Bork, P., Bowler, C., Delmont, T. O., Gasol, J. M., Gossert, A. D., Kahles, A., Sullivan, M. B.,
Published in: Nature, Issue 607, 2022, Page(s) 111-118, ISSN 1476-4687
Publisher: Springer
DOI: 10.1038/s41586-022-04862-3

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Author(s): Juan José Pierella Karlusich; Eric Pelletier; Fabien Lombard; Madeline Carsique; Etienne Dvorak; Sébastien Colin; Marc Picheral; Francisco M. Cornejo-Castillo; Silvia G. Acinas; Rainer Pepperkok; Eric Karsenti; Colomban de Vargas; Patrick Wincker; Chris Bowler; Rachel A Foster
Published in: Nature Communications, Issue 1, 2021, Page(s) 12345, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1101/2020.10.17.343731

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

Author(s): Kurt H. Kjær, Mikkel Winther Pedersen, Bianca De Sanctis, Binia De Cahsan, Thorfinn S. Korneliussen, Christian S. Michelsen, Karina K. Sand, Stanislav Jelavić, Anthony H. Ruter, Astrid M. A. Schmidt, Kristian K. Kjeldsen, Alexey S. Tesakov, Ian Snowball, John C. Gosse, Inger G. Alsos, Yucheng Wang, Christoph Dockter, Magnus Rasmussen, Morten E. Jørgensen, Birgitte Skadhauge, Ana Prohaska, Jeppe
Published in: Nature, Issue 612, 2024, Page(s) 283-291, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-022-05453-y

Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros

Author(s): Charlotte Nef, Mohammed-Amin Madoui, Éric Pelletier, Chris Bowler
Published in: PLOS Biology, Issue 20, 2023, Page(s) e3001893, ISSN 1545-7885
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/journal.pbio.3001893

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