Untangling eco-evolutionary impacts on diatom genomes over timescales relevant to current climate change

Project Information

DIATOMIC

Grant agreement ID: 835067

DOI

10.3030/835067

Project closed

EC signature date 21 May 2019

Start date 1 November 2019

End date 31 October 2025

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 495 753,00

EU contribution

€ 2 495 753,00

Coordinated by

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (37)

A roadmap for using the UN Decade of Ocean Science for Sustainable Development in support of science, policy, and action.

Author(s): Claudet, J., Bopp, L., Cheung, W. W. L., Devillers, R., Escobar-Briones, E., Haugan, P., Heymans, J. H., Masson-Delmotte, V., Matz-Luck, N., Miloslavich, P., Mullineaux, L., Visbeck, M., Watson, R., Zivian, A. M., Ansorge, I., Araujo, M., Arico, S., Bailly, D., Barbière, J., Barnerias, C., Bowler, C., Brun, V., Cazenave, A., Diver, C., Euzen, A., Thierno Gaye, A., Hilmi, N., Ménard, F., Moulin,
Published in: One Earth, Issue 1, 2020, Page(s) 123, ISSN 2590-3330
Publisher: Cell Press
DOI: 10.1016/j.oneear.2019.10.012

Macroscale patterns of oceanic zooplankton composition and size structure.

Author(s): Brandão, M. C., Benedetti, F., Martini, S., Soviadan, Y. D., Irisson, J. O., Romagnan, J. B., Elineau, A., Desnos, C., Jalabert, L., Freire, A. S., Picheral, M., Guidi, L., Gorsky, G., Bowler, C., Karp-Boss, L., Henry, N., de Vargas, C., Sullivan, M. B., Tara Oceans Consortium Coordinators, Stemmann, L. and Lombard, F.
Published in: Sci Rep, Issue 11, 2021, Page(s) 15714, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-94615-5

Global Trends in Marine Plankton Diversity across Kingdoms of Life.

Author(s): Ibarbalz, Federico M.; Henry, Nicolas; Brandão, Manoela C.; Martini, Séverine; Busseni, Greta; Byrne, Hannah; Coelho, Luis Pedro; Endo, Hisashi; Gasol, Josep M.; Gregory, Ann C.; Mahé, Frédéric; Rigonato, Janaina; Royo-Llonch, Marta; Salazar, Guillem; Sanz-Sáez, Isabel; Scalco, Eleonora; Soviadan, Dodji; Zayed, Ahmed A.; Zingone, Adriana; Labadie, Karine; Ferland, Joannie; Marec, Claudie; Ka
Published in: EISSN: 1097-4172, Issue 3, 2019, Page(s) 12345, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.3929/ethz-b-000378196

Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean

Author(s): Busseni, G., Caputi, L., Piredda, R., Fremont, P., Mele, B. H., Campese, L., Scalco, E., de Vargas, C., Bowler, C., d'Ovidio, F., Zingone, A., Ribera d’Alcalà, M. Iudicone, D.
Published in: Global Ecol. Biogeo., Issue 1, 2020, Page(s) 1-14, ISSN 1466-822X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/geb.13161

Priorities for ocean microbiome research

Author(s): Tara Ocean Foundation, Tara Oceans, European Molecular Biology Laboratory (EMBL), European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC). Corresponding author Bowler, C.
Published in: Nature Microbiology, Issue 7, 2022, Page(s) 937-947, ISSN 2058-5276
Publisher: Springer
DOI: 10.1038/s41564-022-01145-5

Exploration of marine phytoplankton: from their historical appreciation to the omics era.

Author(s): Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Published in: J Plankton Res, Issue 42, 2020, Page(s) 595-612, ISSN 0142-7873
Publisher: Oxford University Press
DOI: 10.1093/plankt/fbaa049

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Author(s): Delmont, T. O., Gaia, M., Hinsinger, D. D., Fremont, P., Vanni, C., Fernandez Guerra, A., Eren, A. M., Kourlaiev, A., d’Agata, L., Clayssen, Q., et al.
Published in: Cell Genomics, Issue 2, 2022, Page(s) 12345, ISSN 2666-979X
Publisher: Cell Press
DOI: 10.1101/2020.10.15.341214

Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum

Author(s): Zhao, X, Rastogi A., Deton Cabanillas, A. F., Ait Mohamed, O., Cantrel, C., Lombard, B., Murik, O., Genovesio, A., Bowler, C., Bouyer, D., Loew, D., Lin, X., Veluchamy, A., Vieira, F. R. J. and Tirichine, L.
Published in: New Phytol, Issue 12, 2021, Page(s) 12345, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17129

The possible fates of Fragilariopsis cylindrus (polar diatom) cells exposed to prolonged darkness

Author(s): Sciandra, T., Forget, M. H., Bruyant, F., Béguin, M., Lacour, T., Bowler, C. and Babin, M.
Published in: J Phycol, Issue 12, 2022, Page(s) 12345, ISSN 0022-3646
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jpy.13232

Genome-wide analysis of allele-specific expression of genes in the model diatom Phaeodactylum tricornutum.

Author(s): Hoguin, A., Rastogi, A. and Bowler, C. and Tirichine, L.
Published in: Sci Rep, Issue 11, 2021, Page(s) 2954, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-82529-1

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.

Author(s): Bulankova, P., Sekulić, M., Jallet, D., Nef, C., van Oosterhout, C., Delmont, T. O., Vercauteren, I., Osuna-Cruz, C. M., Vancaester, E., Mock, T., Sabbe, K., Daboussi, F., Bowler, C., Vyverman, W., Vandepoele, K. and De Veylder, L.
Published in: Curr Biol, Issue S0960-9822(21)00672-2, 2021, Page(s) S0960-9822(21)00672-2, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.05.013

Contribution of genome-scale metabolic modelling to niche theory

Author(s): Régimbeau, A., Budinich, M., Larhlimi, A., Pierella Karlusich, J. J., Aumont, O., Memery, L., Bowler, C. and Eveillard, D.
Published in: Ecol Lett, Issue 25, 2022, Page(s) 1352-1364, ISSN 1461-023X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ele.13954

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Author(s): Juan José Pierella Karlusich; Eric Pelletier; Lucie Zinger; Fabien Lombard; Adriana Zingone; Sébastien Colin; Josep M. Gasol; Richard G. Dorrell; Nicolas Henry; Eleonora Scalco; Silvia G. Acinas; Patrick Wincker; Colomban Vargas; Chris Bowler
Published in: https://hal.archives-ouvertes.fr/hal-03559541, Issue 1, 2022, Page(s) 123, ISSN 1755-0998
Publisher: Wiley
DOI: 10.1111/1755-0998.13592

Coupling imaging and omics in plankton surveys: State-of-the-art, challenges, and future directions

Author(s): Pierella Karlusich, J. J., Lombard, F., Irisson, J.-O., Bowler, C. and Foster, R. A.
Published in: Frontiers Mar Sci, Issue 9, 2022, Page(s) 878803, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2022.878803

Probing the diversity of Polycomb and Trithorax proteins in cultured and environmentally sampled microalgae.

Author(s): Zhao, X., Deton Cabanillas, A.-F., Veluchamy, A., Bowler, C., Vieira, F. R. J. and Tirichine, L.
Published in: Frontiers Mar Sci, Issue 12, 2020, Page(s) 12345, ISSN 2296-7745
Publisher: Frontiers
DOI: 10.3389/fmars.2020.00189

Tara Oceans: towards global ocean ecosystems biology.

Author(s): Shinichi Sunagawa; Silvia G. Acinas; Peer Bork; Peer Bork; Chris Bowler; Tara Oceans Coordinators; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B. Sullivan; Patrick Wincker; Colomban de Vargas
Published in: "Nature Reviews Microbiology, Nature Publishing Group, 2020, 18, pp.428-445. ⟨10.1038/s41579-020-0364-5⟩", Issue 1, 2020, Page(s) 428-445, ISSN 1740-1534
Publisher: Springer
DOI: 10.1038/s41579-020-0364-5

Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Author(s): Royo-Llonch, M., Sánchez, P., Ruiz-González, C., Salazar, G., Pedrós-Alió, C., Sebastián, M., Labadie, K., Paoli, L., Ibarbalz, F. M., Zinger, L., Churcheward, B., Tara Oceans Coordinators, Chaffron, S., Eveillard, D., Karsenti, E., Sunagawa, S., Wincker, P., Karp-Boss, L., Bowler, C. and Acinas, S. G.
Published in: Nature Microbiology, Issue 6, 2021, Page(s) 1561-1574, ISSN 2058-5276
Publisher: Springer
DOI: 10.1038/s41564-021-00979-9

Carbon Dioxide Concentration Mechanisms in Natural Populations of Marine Diatoms: Insights From Tara Oceans.

Author(s): Juan José Pierella Karlusich; Juan José Pierella Karlusich; Chris Bowler; Chris Bowler; Haimanti Biswas
Published in: Frontiers in Marine Sciences, Issue 5, 2021, Page(s) 657821, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.657821

A genomics approach reveals the global genetic polymorphism, structure and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

Author(s): Rastogi, A., Vieira, F. R. J., Deton-Cabanillas, A.-F., Veluchamy, A., Cantrel, C., Wang, G., Vanormelingen, P., Bowler, C., Piganeau, G., Hu, H. and Tirichine, L.
Published in: ISME J, Issue 12, 2020, Page(s) 12345, ISSN 1751-7370
Publisher: Springer
DOI: 10.1038/s41396-019-0528-3

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Author(s): Richard G. Dorrell, Adrien Villain, Benoît Perez-Lamarque, Guillemette Audren de Kerdrel, Giselle McCallum, Andrew K. Watson, Ouardia Ait-Mohamed, Adriana Alberti, Erwann Corre, Kyle R. Frischkorn, Juan J. Pierella Karlusich, Eric Pelletier, Hélène Morlon, Chris Bowler, Guillaume Blanc
Published in: Proceedings of the National Academy of Sciences, Issue 118/4, 2021, Page(s) e2009974118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2009974118

Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.

Author(s): Sato, S., Nanjappa, D., Dorrell, R. G., Vieira, F. R. J., Kazamia, E., Tirichine, L., Veluchamy, A., Heilig, R., Aury, J. M., Jaillon, O., Wincker, P., Fussy, Z., Obornik, M., Muñoz-Gómez, S. A., Mann, D. G., Bowler, C. and Zingone, A.
Published in: Sci Rep, Issue 10, 2020, Page(s) 9449, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-65941-x

Whole-genome scanning reveals selection mechanisms in epipelagic Chaetoceros diatom populations

Author(s): Nef, C., Madoui, M.-A., Pelletier, E. and Bowler, C.
Published in: BioRxiv, Issue 12, 2022, Page(s) 12345, ISSN 2692-8205
Publisher: BioRxiv
DOI: 10.1101/2022.05.19.492674

Global drivers of eukaryotic plankton biogeography in the sunlit ocean.

Author(s): Sommeria-Klein, G., Watteaux, R., Ibarbalz, F. M., Pierella Karlusich, J. J., Iudicone, D., Bowler, C. and Morlon, H.
Published in: Science, Issue 374, 2021, Page(s) 594-599, ISSN 1095-9203
Publisher: AAAS
DOI: 10.1126/science.abb3717

Diatoms Are Selective Segregators in Global Ocean Planktonic Communities.

Author(s): Vincent, Flora; Bowler, Chris
Published in: mSystems, Vol 5, Iss 1 (2020), Issue 3, 2020, Page(s) 12345, ISSN 1069-5524
Publisher: ASM
DOI: 10.1128/msystems.00444-19

Molecular biology for green recovery-A call for action.

Author(s): Rodríguez-Martínez, M., Nielsen, J., Dupont, S., Vamathevan, J., Glover, B. J., Crosswell, L. C., Rouse, B., Luisi, B. F., Bowler, C., Gasser, S. M., Arendt, D., Erb, T. J., de Lorenzo, V., Heard, E. and Patil, K. R.
Published in: PLoS Biol, Issue 20, 2022, Page(s) e3001623, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3001623

Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

Author(s): Dorrell, R. G., Kuo, A., Füssy, Z., Richardson, E., Salamov, A., Zarevski, N., Freyria, N. J., Ibarbalz, F. M., Jenkins, J., Pierella Karlusich, J. J., Steindorff, A. S., Edgar, R. E., Handley, L., Lail, K., Lipzen, A., Lombard, V., McFarlane, J., Nef, C., Novák Vanclová, A. M. G., Peng, Y., Plott, C., Potvin, M., Rocha Jimenez Vieira, F., Barry, K., Dacks, J. B., de Vargas, C., Henrissat, B.,
Published in: BioRxiv, Issue 1, 2022, Page(s) 12345, ISSN 2692-8205
Publisher: BioRxiv
DOI: 10.1101/2021.07.31.454568

Paleo-diatom composition from Santa Barbara Basin deep-sea sediments: a comparison of 18S-V9 and diat-rbcL metabarcoding vs shotgun metagenomics

Author(s): Armbrecht, L., Eisenhofer, R., Utge, J., Sibert, E. C., Rocha, F., Ward, R., Pierella Karlusich, J. J., Tirichine, L., Norris, R., Summers, M. and Bowler, C.
Published in: ISME Comm, Issue 12, 2021, Page(s) 12345, ISSN 2730-6151
Publisher: Springer
DOI: 10.1038/s43705-021-00070-8

Complex response of the Chlorarachniophyte Bigelowiella natans to iron availability

Author(s): Kotabova, E., Malych, R., Pierella Karlusich, J. J., Kazamia, E., Eichner, M., Mach, J., Lesuisse, E., Bowler, C., Prášil, O. and Sutak, R.
Published in: mSys, Issue 6, 2021, Page(s) e00738-00720, ISSN 1823-6782
Publisher: Akademi Sains Malaysia
DOI: 10.1128/msystems.00738-20

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Author(s): Delmont, T. O., Pierella Karlusich, J. J., Veseli, I., Fuessel, J., Eren, A. M., Foster, R. A., Bowler, C., Wincker, P. and Pelletier, E.
Published in: ISME J, Issue 16, 2021, Page(s) 927-936, ISSN 1751-7370
Publisher: Springer
DOI: 10.1038/s41396-021-01135-1

Global identification of a marine diatom long noncoding natural antisense transcripts (NATs) and their response to phosphate fluctuations.

Author(s): Cruz de Carvalho, M. H. and Bowler, C.
Published in: Sci Rep, Issue 10, 2020, Page(s) 14110, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-71002-0

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Author(s): Salazar, Guillem; Paoli, Lucas; Alberti, Adriana; Huerta-Cepas, Jaime; Ruscheweyh, Hans-Joachim; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-Llonch, Marta; Roux, Simon; Sánchez, Pablo; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Fe
Published in: EISSN: 1097-4172, Issue 3, 2019, Page(s) 12345, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.1016/j.cell.2019.10.014

PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum.

Author(s): Ouardia Ait-Mohamed; Anna M. G. Novák Vanclová; Nathalie Joli; Yue Liang; Xue Zhao; Xue Zhao; Auguste Genovesio; Leila Tirichine; Leila Tirichine; Chris Bowler; Richard G. Dorrell
Published in: Frontiers in Plant Science, Vol 11 (2020), Issue 3, 2020, Page(s) 12345, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.590949

Phytoplankton in the Tara Ocean

Author(s): Pierella Karlusich, J. J., Ibarbalz, F. M. and Bowler, C.
Published in: Annu. Rev. Mar. Sci., Issue 12, 2020, Page(s) 233-265, ISSN 1941-1405
Publisher: Annual Reviews Inc.
DOI: 10.1146/annurev-marine-010419-010706

Environmental vulnerability of the global ocean epipelagic plankton community interactome

Author(s): Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nicolas Henry; Charlotte Nef; Mathieu Ardyna; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; Connie Lovejoy; Alison E. Murray; Hugo Sarmento; Tara Oceans Coordinators; Silvia G. Acinas; Marcel Babin; Marcel Babin; Daniele Iudicone; Olivier Jaillon; Eric Karsenti; Patrick Wincker; Lee Karp-Boss; Matthew B. Sullivan;
Published in: https://hal.archives-ouvertes.fr/hal-03458184, Issue 2, 2021, Page(s) 12345, ISSN 2375-2548
Publisher: AAAS
DOI: 10.1126/sciadv.abg1921

Iron metabolism strategies in diatoms

Author(s): Gao, X., Bowler, C. and Kazamia, E.
Published in: J Exp Bot, Issue 72, 2021, Page(s) 2165-2180, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa575

Biosynthetic potential of the global ocean microbiome

Author(s): Paoli, L., Ruscheweyh, H.-J., Forneris, C. C., Hubrich. F., Kautsar, S., Bhushan, A., Lotti, A., Clayssen, Q., Salazar, G., Milanese, A., Carlström, C. I., Papadopoulou, C., Gehrig, D., Karasikov, M., Mustafa, H., Larralde, M., Carroll, L. M., Sánchez, P., Zayed, A. A., Cronin, D. R., Acinas, S. G., Bork, P., Bowler, C., Delmont, T. O., Gasol, J. M., Gossert, A. D., Kahles, A., Sullivan, M. B.,
Published in: Nature, Issue 607, 2022, Page(s) 111-118, ISSN 1476-4687
Publisher: Springer
DOI: 10.1038/s41586-022-04862-3

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Author(s): Juan José Pierella Karlusich; Eric Pelletier; Fabien Lombard; Madeline Carsique; Etienne Dvorak; Sébastien Colin; Marc Picheral; Francisco M. Cornejo-Castillo; Silvia G. Acinas; Rainer Pepperkok; Eric Karsenti; Colomban de Vargas; Patrick Wincker; Chris Bowler; Rachel A Foster
Published in: Nature Communications, Issue 1, 2021, Page(s) 12345, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1101/2020.10.17.343731