Biomarker discovery by AI-guided, image based single-cell isolation proteomics

Project Information

Visual Proteomics

Grant agreement ID: 846795

DOI

10.3030/846795

Project closed

EC signature date 26 March 2019

Start date 1 April 2019

End date 31 March 2021

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost

€ 207 312,00

EU contribution

€ 207 312,00

Coordinated by

KOBENHAVNS UNIVERSITET
Denmark

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Other (4)

Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation

Author(s): Andreas-David Brunner, Marvin Thielert, Catherine G. Vasilopoulou, Constantin Ammar, Fabian Coscia, Andreas Mund, Ole B. Hoerning, Nicolai Bache, Amalia Apalategui, Markus Lubeck, Sabrina Richter, David S. Fischer, Oliver Raether, Melvin A. Park, Florian Meier, Fabian J. Theis, Matthias Mann
Published in: bioRxiv, 2020
Publisher: bioRxiv
DOI: 10.1101/2020.12.22.423933

Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities

Author(s): Thomas Kruse, Caroline Benz, Dimitriya H. Garvanska, Richard Lindqvist, Filip Mihalic, Fabian Coscia, Ravi Teja Inturi, Ahmed Sayadi, VLeandro Simonetti, Emma Nilsson, Muhammad Ali, Johanna Kliche, Ainhoa Moliner Morro, Andreas Mund, Eva Andersson, Gerald McInerney, Matthias Mann, Per Jemth, Norman E Davey, Anna K Överby, Jakob Nilsson, Ylva Ivarsson
Published in: bioRxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.04.19.440086

Clinical Knowledge Graph Integrates Proteomics Data into Clinical Decision-Making

Author(s): Philipp E. Geyer; Alberto Santos; Lars Juhl Jensen; Ana R. Colaço; Filip Mundt; Annelaura Bach Nielsen; Nicolai J. Wewer Albrechtsen; Fabian Coscia; Lili Niu; Matthias Mann
Published in: bioRxiv, Issue 1, 2020
Publisher: bioRxiv
DOI: 10.1101/2020.05.09.084897

AI-driven Deep Visual Proteomics defines cell identity and heterogeneity

Author(s): Andreas Mund, Fabian Coscia, Réka Hollandi, Ferenc Kovács, András Kriston, Andreas-David Brunner, Michael Bzorek, Soraya Naimy, Lise Mette Rahbek Gjerdrum, Beatrice Dyring-Andersen, Jutta Bulkescher, Claudia Lukas, Christian Gnann, Emma Lundberg, Peter Horvath, Matthias Mann
Published in: bioRxiv, 2021
Publisher: bioRxiv
DOI: 10.1101/2021.01.25.427969

Peer reviewed articles (3)

Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin

Author(s): Beatrice Dyring-Andersen, Marianne Bengtson Løvendorf, Fabian Coscia, Alberto Santos, Line Bruun Pilgaard Møller, Ana R. Colaço, Lili Niu, Michael Bzorek, Sophia Doll, Jørgen Lock Andersen, Rachael A. Clark, Lone Skov, Marcel B. M. Teunissen, Matthias Mann
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-19383-8

A streamlined mass spectrometry–based proteomics workflow for large‐scale FFPE tissue analysis

Author(s): Fabian Coscia, Sophia Doll, Jacob Mathias Bech, Lisa Schweizer, Andreas Mund, Ernst Lengyel, Jan Lindebjerg, Gunvor Iben Madsen, José MA Moreira, Matthias Mann
Published in: The Journal of Pathology, Issue 251/1, 2020, Page(s) 100-112, ISSN 0022-3417
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/path.5420

Homology-directed repair protects the replicating genome from metabolic assaults

Author(s): Somyajit, Kumar; Spies, Julian; Coscia, Fabian; Kirik, Ufuk; Rask, Maj-Britt; Lee, Ji-Hoon; Neelsen, Kai John; Mund, Andreas; Jensen, Lars Juhl; Paull, Tanya T; Mann, Matthias; Lukas, Jiri.
Published in: Developmental Cell, 2021, ISSN 1534-5807
Publisher: Cell Press
DOI: 10.1016/j.devcel.2021.01.011