Understanding and predicting PATHOgen COMmunities

Project Information

PATHOCOM

Grant agreement ID: 951444

DOI

10.3030/951444

EC signature date 30 June 2021

Start date 1 July 2021

End date 30 June 2028

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 9 945 744,00

EU contribution

€ 9 945 744,00

Coordinated by

MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (14)

The design of mapping populations: Impacts of geographic scale on genetic architecture and mapping efficacy for defense and immunity.

Author(s): Andrew D. Gloss, Margaret C. Steiner, John Novembre, Joy Bergelson
Published in: Current Opinion in Plant Biology, Issue Volume 74, August 2023, 102399, 2023, ISSN 1369-5266
Publisher: Elsevier BV
DOI: 10.1016/j.pbi.2023.102399

The Genetic Architecture of <i>Arabidopsis thaliana</i> in Response to Native Non-Pathogenic Bacterial Species Revealed by Genome-Wide Association Mapping in Field Conditions

Author(s): Daniela Ramírez-Sánchez, Rémi Duflos, Chrystel Gibelin-Viala, Rémy Zamar, Fabienne Vailleau, Fabrice Roux
Published in: Phytobiomes Journal, Issue 8, 2024, Page(s) 556-567, ISSN 2471-2906
Publisher: Scientific Societies
DOI: 10.1094/pbiomes-01-24-0010-r

Applying ecological principles to microbiome engineering

Author(s): Lucas P. Henry, Joy Bergelson
Published in: Nature Microbiology, 2025, ISSN 2058-5276
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s41564-025-02076-7

The plant immune receptor SNC1 monitors helper NLRs targeted by a bacterial effector

Author(s): Ming-Yu Wang, Jun-Bin Chen, Rui Wu, Hai-Long Guo, Yan Chen, Zhen-Ju Li, Lu-Yang Wei, Chuang Liu, Sheng-Feng He, Mei-Da Du, Ya-long Guo, You-Liang Peng, Jonathan D.G. Jones, Detlef Weigel, Jian-Hua Huang, Wang-Sheng Zhu
Published in: Cell Host &amp; Microbe, Issue 31, 2024, Page(s) 1792-1803.e7, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2023.10.006

The genetic and physiological basis of <i>Arabidopsis thaliana</i> tolerance to <i>Pseudomonas viridiflava</i>

Author(s): Alejandra Duque‐Jaramillo, Nina Ulmer, Saleh Alseekh, Ilja Bezrukov, Alisdair R. Fernie, Aleksandra Skirycz, Talia L. Karasov, Detlef Weigel
Published in: New Phytologist, Issue 240, 2023, Page(s) 1961-1975, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.19241

Toward Ecologically Relevant Genetics of Interactions Between Host Plants and Plant Growth‐Promoting Bacteria

Author(s): Rémi Duflos, Fabienne Vailleau, Fabrice Roux
Published in: Advanced Genetics, Issue 5, 2024, ISSN 2641-6573
Publisher: Wiley
DOI: 10.1002/ggn2.202300210

Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought

Author(s): Talia L. Karasov, Manuela Neumann, Laura Leventhal, Efthymia Symeonidi, Gautam Shirsekar, Aubrey Hawks, Grey Monroe, null null, A. Cristina Barragán, Ilja Bezrukov, Claudia Friedemann, Alba González Hernando, Anette Habring, Julia Hildebrandt, Sonja Kersten, Patricia Lang, Sergio M. Latorre, Miriam Lucke, Derek S. Lundberg, Ulrich Lutz, Fiona Paul, Fernando A. Rabanal, Julian Regalado, Thanvi Sr
Published in: Nature Microbiology, Issue 9, 2024, Page(s) 2748-2758, ISSN 2058-5276
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s41564-024-01773-z

Genetic architecture of the response of Arabidopsis thaliana to a native plant-growth-promoting bacterial strain

Author(s): Daniela Ramírez-Sánchez, Chrystel Gibelin-Viala, Fabrice Roux, Fabienne Vailleau
Published in: Frontiers in Plant Science, Issue 14, 2023, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1266032

Evolutionary implications of host genetic control for engineering beneficial microbiomes

Author(s): Lucas P. Henry, Joy Bergelson
Published in: Current Opinion in Systems Biology, Issue Volume 34, June 2023, 100455, 2023, ISSN 2452-3100
Publisher: Elsevier BV
DOI: 10.1016/j.coisb.2023.100455

Building microbial synthetic communities: get inspired by the design of synthetic plant communities

Author(s): Paloma Durán, Fabienne Vailleau, Fabrice Roux
Published in: New Phytologist, Issue 246, 2025, Page(s) 402-405, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.70011

Spatial metatranscriptomics resolves host–bacteria–fungi interactomes

Author(s): Sami Saarenpää, Or Shalev, Haim Ashkenazy, Vanessa Carlos, Derek Severi Lundberg, Detlef Weigel, Stefania Giacomello
Published in: Nature Biotechnology, Issue 42, 2024, Page(s) 1384-1393, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-023-01979-2

Genome-wide association studies in plant pathosystems: success or failure?

Author(s): Choghag Demirjian, Fabienne Vailleau, Richard Berthomé, Fabrice Roux
Published in: Trends in Plant science, Issue Volume 28, Issue 4, April 2023, 2023, Page(s) 471-485, ISSN 1360-1385
Publisher: Elsevier BV
DOI: 10.1016/j.tplants.2022.11.006

The Genetic Architecture of Adaptation to Leaf and Root Bacterial Microbiota in Arabidopsis thaliana

Author(s): Fabrice Roux, Léa Frachon, Claudia Bartoli
Published in: Molecular Biology and Evolution, Issue Volume 40, Issue 5, May 2023, msad093, 2023, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msad093

Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere

Author(s): Derek S. Lundberg, Roger de Pedro Jové, Pratchaya Pramoj Na Ayutthaya, Talia L. Karasov, Or Shalev, Karin Poersch, Wei Ding, Anita Bollmann-Giolai, Ilja Bezrukov, Detlef Weigel
Published in: PNAS, Issue Vol. 119, No. 52, December 27, 2022, 2022, ISSN 1091-6490
Publisher: National Academy of Sciences of the United States of America (NAS)
DOI: 10.1073/pnas.2211881119

Other (1)

The relative effects of abiotic and biotic factors in explaining the structure of soil bacterial communities at diverse taxonomic levels

Author(s): Baptiste Mayjonade, Rémy Zamar, Sébastien Carrere, Fabrice Roux
Published in: 2024
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.29.620845