TRANSPORT OF SOFT MATTER AT THE NANOSCALE

Report on Dissemination / Outreach activities for the first reporting period: Public lectures: A series of public talks on soft matter organized in connection to NANOTRANS annual meetings Outreach activities: Activities as detailed in the part B of the proposal. Release to press and media about ITN & Marie Curie Actions, and about NANOTRANS research achievements. Press release will be carried out at several occassions, e.g. in months 6, 24 and 42. Case Study Report for the first reporting period: Evaluation of training instruments Scientific publications : Research published in high-impact peer-reviewed journals. (M24) Products & Patents: Products / patents (M24)

Single polymer flow

Report on polymer dynamics simulations in nanochannels

Dissemination / Outreach activities report 2

Report on Dissemination / Outreach activities for the second reporting period: Public lectures: A series of public talks on soft matter organized in connection to NANOTRANS annual meetings Outreach activities: Activities as detailed in the part B of the proposal. Release to press and media about ITN & Marie Curie Actions, and about NANOTRANS research achievements. Press release will be carried out at several occassions, e.g. in months 6, 24 and 42. Topical WS: Electrokinetics / Discussion meeting focused on electrokinetic phenomena (Lead: FUB) (M34) Topical WS: Nanofluidics / Discussion meeting on progress in nanofluidics (Lead: CNRS) (M34) Topical WS: Polymer flow / Discussion meeting on polymer flow in confinement (Lead: UNIVIE) (M34) Topical WS: Characterization / Discussion meeting on the methods for nano-characterization (Lead: COR) (M34) Conference: Medium size international conference on transport of soft matter at the nanoscale (M42) Summer School Proceedings: Bookstyle proceedings of the summer school (M48) Case Study Report for the second reporting period: Evaluation of training instruments Scientific publications (>100): Research published in high-impact peer-reviewed journals. At least 3 publications per ESR + many more from PIs involved. (M48) Products & Patents (>10): Some projects will deliver products / patents. We anticipate more than 10 (excluding software products). (M48)

Prediction for electrokinetic flow and conductivity

As a function of driving field, surface and ionic conditions

Nanofilters/separators design

Structured nanochannels design for separating knotted polymers

Training Report 2

Training activities for the second reporting period: - Advanced Training Modules T1-T8 - Transferable Skills Modules S1-S8 - NANOTRANS Summer school (Month 30)

Training Report 1

Training activities for the first reporting period: - Advanced Training Modules T1-T8 - Transferable Skills Modules S1-S8

Solvent evaporation kinetics and particle arrangement

Report on systematic exploration of dynamics in particle-based gels

Creation of composite-material nanotubes

Report on transport measurements inside individual nanotubes

Theory: electroacoustic signal

Report on analytical theory

Hybrid computatrional model

Exact el. profiles + fluid flow

Commercial program for use by experimental groups

Coarse grained simulation code based on atomistic input

Newly parameterized atomistic force field

Optimization for studying shear flow of confined water

NANOTRANS Web page

Launching the web portal for public dissemination and network management purposes

Assembly and swarming of liquid microplets

Micrographs of swarms carrying cargo along reconfigurable paths

New simulation code

MPC/LB code for electroacoustics

Ab initio MD code

Simulating water/H-bonds properties in nanoconfinement

Bread board prototype system based on DP-OCT technique

System for low coherence zeta potential measurements

Apparatus for controlling voltage between graphene sheets

Parallel sheets of controlled separation from 0 100 nm

Prototype nanofluidic devices

Osmotic diodes, ionic pumps…

Publikacje

Topology-Sensitive Microfluidic Filter for Polymers of Varying Stiffness

Autorzy: Lisa B. Weiss, Arash Nikoubashman, Christos N. Likos
Opublikowane w: ACS Macro Letters, Numer 6/12, 2017, Strona(/y) 1426-1431, ISSN 2161-1653
Wydawca: American Chemical Society
DOI: 10.1021/acsmacrolett.7b00768

Nonequilibrium dynamics of probe filaments in actin-myosin networks

Autorzy: J. Gladrow, C. P. Broedersz, C. F. Schmidt
Opublikowane w: Physical Review E, Numer 96/2, 2017, ISSN 2470-0045
Wydawca: American Physical Society
DOI: 10.1103/PhysRevE.96.022408

Broken detailed balance and non-equilibrium dynamics in living systems: a review

Autorzy: F S Gnesotto, F Mura, J Gladrow, C P Broedersz
Opublikowane w: Reports on Progress in Physics, Numer 81/6, 2018, Strona(/y) 066601, ISSN 0034-4885
Wydawca: Institute of Physics Publishing
DOI: 10.1088/1361-6633/aab3ed

Contact-free calibration of an asymmetric multi-layer interferometer for the surface force balance

Autorzy: Marco Balabajew, Christian D. van Engers, Susan Perkin
Opublikowane w: Review of Scientific Instruments, Numer 88/12, 2017, Strona(/y) 123903, ISSN 0034-6748
Wydawca: American Institute of Physics
DOI: 10.1063/1.5006056

Particle transport across a channel via an oscillating potential

Autorzy: Yizhou Tan, Jannes Gladrow, Ulrich F. Keyser, Leonardo Dagdug, Stefano Pagliara
Opublikowane w: Physical Review E, Numer 96/5, 2017, ISSN 2470-0045
Wydawca: American Physical Society
DOI: 10.1103/PhysRevE.96.052401

Active nematic emulsions

Autorzy: Pau Guillamat, Žiga Kos, Jérôme Hardoüin, Jordi Ignés-Mullol, Miha Ravnik, Francesc Sagués
Opublikowane w: Science Advances, Numer 4/4, 2018, Strona(/y) eaao1470, ISSN 2375-2548
Wydawca: Science
DOI: 10.1126/sciadv.aao1470

Active Brownian Filamentous Polymers under Shear Flow

Autorzy: Aitor Martín-Gómez, Gerhard Gompper, Roland Winkler
Opublikowane w: Polymers, Numer 10/8, 2018, Strona(/y) 837, ISSN 2073-4360
Wydawca: MDPI : Basel 2009-
DOI: 10.3390/polym10080837

Optimizing Brownian escape rates by potential shaping

Autorzy: Marie Chupeau, Jannes Gladrow, Alexei Chepelianskii, Ulrich F. Keyser, Emmanuel Trizac
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 117/3, 2020, Strona(/y) 1383-1388, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1910677116

Computation of the Hydrodynamic Radius of Charged Nanoparticles from Non-equilibrium Molecular Dynamics

Autorzy: Weiss, Lisa,; Dahirel, Vincent; Marry, Virginie; Jardat, Marie
Opublikowane w: J. Phys. Chem. B, Numer 122, 2018, Strona(/y) 5940−5950, ISSN 1520-6106
Wydawca: American Chemical Society
DOI: 10.1021/acs.jpcb.8b01153

Lattice Boltzmann electrokinetics simulation of nanocapacitors

Autorzy: Adelchi J. Asta, Ivan Palaia, Emmanuel Trizac, Maximilien Levesque, Benjamin Rotenberg
Opublikowane w: The Journal of Chemical Physics, Numer 151/11, 2019, Strona(/y) 114104, ISSN 0021-9606
Wydawca: American Institute of Physics
DOI: 10.1063/1.5119341

Confinement-controlled rectification in a geometric nanofluidic diode

Autorzy: S. Dal Cengio, I. Pagonabarraga
Opublikowane w: The Journal of Chemical Physics, Numer 151/4, 2019, Strona(/y) 044707, ISSN 0021-9606
Wydawca: American Institute of Physics
DOI: 10.1063/1.5108723

Linear Response Theory and Green-Kubo Relations for Active Matter

Autorzy: Sara Dal Cengio, Demian Levis, Ignacio Pagonabarraga
Opublikowane w: Physical Review Letters, Numer 123/23, 2019, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/PhysRevLett.123.238003

Beyond the Tradeoff: Dynamic Selectivity in Ionic Transport and Current Rectification

Autorzy: Anthony R. Poggioli, Alessandro Siria, Lydéric Bocquet
Opublikowane w: The Journal of Physical Chemistry B, Numer 123/5, 2019, Strona(/y) 1171-1185, ISSN 1520-6106
Wydawca: American Chemical Society
DOI: 10.1021/acs.jpcb.8b11202

Dramatic pressure-sensitive ion conduction in conical nanopores

Autorzy: Laetitia Jubin, Anthony Poggioli, Alessandro Siria, Lydéric Bocquet
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 115/16, 2018, Strona(/y) 4063-4068, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1721987115

Molecular streaming and its voltage control in ångström-scale channels

Autorzy: T. Mouterde, A. Keerthi, A. R. Poggioli, S. A. Dar, A. Siria, A. K. Geim, L. Bocquet, B. Radha
Opublikowane w: Nature, Numer 567/7746, 2019, Strona(/y) 87-90, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41586-019-0961-5

Dynamics of Ring Disclinations Driven by Active Nematic Shells

Autorzy: Jérôme Hardoüin, Pau Guillamat, Francesc Sagués, Jordi Ignés-Mullol
Opublikowane w: Frontiers in Physics, Numer 7, 2019, ISSN 2296-424X
Wydawca: Frontiers
DOI: 10.3389/fphy.2019.00165

Reconfigurable flows and defect landscape of confined active nematics

Autorzy: Jérôme Hardoüin, Rian Hughes, Amin Doostmohammadi, Justine Laurent, Teresa Lopez-Leon, Julia M. Yeomans, Jordi Ignés-Mullol, Francesc Sagués
Opublikowane w: Communications Physics, Numer 2/1, 2019, ISSN 2399-3650
Wydawca: Nature
DOI: 10.1038/s42005-019-0221-x

Active Brownian filaments with hydrodynamic interactions: conformations and dynamics

Autorzy: Aitor Martín-Gómez, Thomas Eisenstecken, Gerhard Gompper, Roland G. Winkler
Opublikowane w: Soft Matter, Numer 15/19, 2019, Strona(/y) 3957-3969, ISSN 1744-683X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c9sm00391f

Non-Markovian data-driven modeling of single-cell motility

Autorzy: Bernhard G. Mitterwallner, Christoph Schreiber, Jan O. Daldrop, Joachim O. Rädler, Roland R. Netz
Opublikowane w: Physical Review E, Numer 101/3, 2020, ISSN 2470-0053
Wydawca: American Physical Society
DOI: 10.1103/physreve.101.032408

Spatial Demixing of Ring and Chain Polymers in Pressure-Driven Flow

Autorzy: Lisa B. Weiss, Christos N. Likos, Arash Nikoubashman
Opublikowane w: Macromolecules, Numer 52/20, 2019, Strona(/y) 7858-7869, ISSN 0024-9297
Wydawca: American Chemical Society
DOI: 10.1021/acs.macromol.9b01629

A correlation-hole approach to the electric double layer with counter-ions only

Autorzy: Ivan Palaia, Martin Trulsson, Ladislav Šamaj, Emmanuel Trizac
Opublikowane w: Molecular Physics, Numer 116/21-22, 2018, Strona(/y) 3134-3146, ISSN 0026-8976
Wydawca: Taylor & Francis
DOI: 10.1080/00268976.2018.1471234

Collective motion of active Brownian particles with polar alignment

Autorzy: Aitor Martín-Gómez, Demian Levis, Albert Díaz-Guilera, Ignacio Pagonabarraga
Opublikowane w: Soft Matter, Numer 14/14, 2018, Strona(/y) 2610-2618, ISSN 1744-683X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c8sm00020d

Role of image charges in ionic liquid confined between metallic interfaces

Autorzy: Samuel Ntim, Marialore Sulpizi
Opublikowane w: Physical Chemistry Chemical Physics, Numer 22/19, 2020, Strona(/y) 10786-10791, ISSN 1463-9076
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d0cp00409j

Hydrodynamics and Filtering of Knotted Ring Polymers in Nanochannels

Autorzy: Lisa B. Weiss, Mattia Marenda, Cristian Micheletti, Christos N. Likos
Opublikowane w: Macromolecules, Numer 52/11, 2019, Strona(/y) 4111-4119, ISSN 0024-9297
Wydawca: American Chemical Society
DOI: 10.1021/acs.macromol.9b00516

Hydrodynamics of polymers in an active bath

Autorzy: Aitor Martin-Gomez, Thomas Eisenstecken, Gerhard Gompper, Roland G. Winkler
Opublikowane w: Physical Review E, Numer 101/5, 2020, Strona(/y) 05612, ISSN 2470-0045
Wydawca: APS
DOI: 10.1103/physreve.101.052612

Direct measurements of structural forces and twist transitions in cholesteric liquid crystal films with a surface force apparatus

Autorzy: Weichao Zheng, Carla Sofia Perez-Martinez, Gia Petriashvili, Susan Perkin, Bruno Zappone
Opublikowane w: Soft Matter, Numer 15/24, 2019, Strona(/y) 4905-4914, ISSN 1744-683X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c9sm00487d

A 3-mirror surface force balance for the investigation of fluids confined to nanoscale films between two ultra-smooth polarizable electrodes

Autorzy: C. D. van Engers, M. Balabajew, A. Southam, S. Perkin
Opublikowane w: Review of Scientific Instruments, Numer 89/12, 2018, Strona(/y) 123901, ISSN 0034-6748
Wydawca: American Institute of Physics
DOI: 10.1063/1.5045485

Effect of the interaction strength and anisotropy on the diffusio-phoresis of spherical colloids

Autorzy: Jiachen Wei, Simón Ramírez-Hinestrosa, Jure Dobnikar, Daan Frenkel
Opublikowane w: Soft Matter, Numer 16/15, 2020, Strona(/y) 3621-3627, ISSN 1744-683X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c9sm02053e

The Lennard-Jones potential: when (not) to use it

Autorzy: Xipeng Wang, Simón Ramírez-Hinestrosa, Jure Dobnikar, Daan Frenkel
Opublikowane w: Physical Chemistry Chemical Physics, Numer 22/19, 2020, Strona(/y) 10624-10633, ISSN 1463-9076
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c9cp05445f

Studying polymer diffusiophoresis with non-equilibrium molecular dynamics

Autorzy: S. Ramírez-Hinestrosa, H. Yoshida, L. Bocquet, D. Frenkel
Opublikowane w: The Journal of Chemical Physics, Numer 152/16, 2020, Strona(/y) 164901, ISSN 0021-9606
Wydawca: American Institute of Physics
DOI: 10.1063/5.0007235

Rapid two-dimensional characterisation of proteins in solution

Autorzy: Kadi L. Saar, Quentin Peter, Thomas Müller, Pavan K. Challa, Therese W. Herling, Tuomas P. J. Knowles
Opublikowane w: Microsystems & Nanoengineering, Numer 5/1, 2019, Strona(/y) s41378, ISSN 2055-7434
Wydawca: Springer Nature
DOI: 10.1038/s41378-019-0072-3

Digital Sensing and Molecular Computation by an Enzyme-Free DNA Circuit

Autorzy: William E. Arter, Yuriy Yusim, Quentin Peter, Christopher G. Taylor, David Klenerman, Ulrich F. Keyser, Tuomas P. J. Knowles
Opublikowane w: ACS Nano, Numer 14/5, 2020, Strona(/y) 5763-5771, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.1021/acsnano.0c00628

Scalable integration of nano-, and microfluidics with hybrid two-photon lithography

Autorzy: Oliver Vanderpoorten, Quentin Peter, Pavan K. Challa, Ulrich F. Keyser, Jeremy Baumberg, Clemens F. Kaminski, Tuomas P. J. Knowles
Opublikowane w: Microsystems & Nanoengineering, Numer 5/1, 2019, Strona(/y) s41378, ISSN 2055-7434
Wydawca: Springer Nature
DOI: 10.1038/s41378-019-0080-3

Microfluidic deposition for resolving single-molecule protein architecture and heterogeneity

Autorzy: Francesco Simone Ruggeri, Jerome Charmet, Tadas Kartanas, Quentin Peter, Sean Chia, Johnny Habchi, Christopher M. Dobson, Michele Vendruscolo, Tuomas P. J. Knowles
Opublikowane w: Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-06345-4

Multidimensional protein characterisation using microfluidic post-column analysis

Autorzy: Tom Scheidt, Tadas Kartanas, Quentin Peter, Matthias M. Schneider, Kadi L. Saar, Thomas Müller, Pavan Kumar Challa, Aviad Levin, Sean Devenish, Tuomas P. J. Knowles
Opublikowane w: Lab on a Chip, Numer 20/15, 2020, Strona(/y) 2663-2673, ISSN 1473-0197
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d0lc00219d

Multivalent ion-induced re-entrant transition of carboxylated cellulose nanofibrils and its influence on nanomaterials’ properties

Autorzy: Luis Valencia, Emma M. Nomena, Susanna Monti, Walter Rosas-Arbelaez, Aji P. Mathew, Sugam Kumar, Krassimir P. Velikov
Opublikowane w: Nanoscale, Numer 12/29, 2020, Strona(/y) 15652-15662, ISSN 2040-3364
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d0nr02888f

Drying of pickering emulsions in a viscoelastic network of cellulose microfibrils

Autorzy: Emma M. Nomena, Krassimir P. Velikov
Opublikowane w: Colloids and Surfaces A: Physicochemical and Engineering Aspects, Numer 568, 2019, Strona(/y) 271-276, ISSN 0927-7757
Wydawca: Elsevier BV
DOI: 10.1016/j.colsurfa.2019.01.075

In-Situ Growth of Metal Oxide Nanoparticles on Cellulose Nanofibrils for Dye Removal and Antimicrobial Applications

Autorzy: Luis Valencia, Sugam Kumar, Emma M. Nomena, German Salazar-Alvarez, Aji P. Mathew
Opublikowane w: ACS Applied Nano Materials, Numer 3/7, 2020, Strona(/y) 7172-7181, ISSN 2574-0970
Wydawca: ACS
DOI: 10.1021/acsanm.0c01511

Biobased Cellulose Nanofibril–Oil Composite Films for Active Edible Barriers

Autorzy: Luis Valencia, Emma M. Nomena, Aji P. Mathew, Krassimir P. Velikov
Opublikowane w: ACS Applied Materials & Interfaces, Numer 11/17, 2019, Strona(/y) 16040-16047, ISSN 1944-8244
Wydawca: American Chemical Society
DOI: 10.1021/acsami.9b02649

Unravelling the Mechanism of Stabilization and Microstructure of Oil-in-Water Emulsions by Native Cellulose Microfibrils in Primary Plant Cells Dispersions

Autorzy: Emma M. Nomena, Caroline Remijn, Faranaaz Rogier, Micah van der Vaart, Panayiotis Voudouris, Krassimir P. Velikov
Opublikowane w: ACS Applied Bio Materials, Numer 1/5, 2018, Strona(/y) 1440-1447, ISSN 2576-6422
Wydawca: ACS
DOI: 10.1021/acsabm.8b00385

Control of active turbulence through addressable soft interfaces

Autorzy: P Guillamat, J Hardoüin, B M Prat, J Ignés-Mullol, F Sagués
Opublikowane w: Journal of Physics: Condensed Matter, Numer 29/50, 2017, Strona(/y) 504003, ISSN 0953-8984
Wydawca: Institute of Physics Publishing
DOI: 10.1088/1361-648x/aa99c8

Resolving protein mixtures using microfluidic diffusional sizing combined with synchrotron radiation circular dichroism

Autorzy: Christian Bortolini, Tadas Kartanas, Davor Copic, Itzel Condado Morales, Yuewen Zhang, Pavan K. Challa, Quentin Peter, Tamás Jávorfi, Rohanah Hussain, Mingdong Dong, Giuliano Siligardi, Tuomas P. J. Knowles, Jérôme Charmet
Opublikowane w: Lab on a Chip, Numer 19/1, 2019, Strona(/y) 50-58, ISSN 1473-0197
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c8lc00757h

Experimental evidence of symmetry breaking of transition-path times

Autorzy: J. Gladrow, M. Ribezzi-Crivellari, F. Ritort, U. F. Keyser
Opublikowane w: Nature Communications, Numer 10/1, 2019, Strona(/y) 55, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-07873-9

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