Rezultaty
See Task 7.3
Report on requirements by other RISee WP3 Task 1
Report on Final project conferenceSee WP1 Task 3
Interim report on T2.1See WP2 Task 1
Report on existing metadata standards, and proposals for new vocabulariesSee Task 7.4
Overview of external datasets, strategy of access methods, and implications on the portal architectureSee Task 4.3 The deliverable is the initial output of the task (starting in year 2), giving the overview of datasets to be integrated to the project technical solutions.
Summary report of SB community engagementSee WP2 Task 3
Report on industrial user engagementSee WP2 Task 3
EM quality assurance workflowSee Task 7.2
Report on available VMs with associated documentation/use case for each of themSee Task 5.4
Report on the progress of the deployment of consolidated platform and its inteactions with infrastructureSee Task 4.1 This is an intermediate report on the consolidated architecture, based on full year experience with its deployment (after M4.1), updated with the experience with the second major deployment (M4.4).
Update of requirements by other RISee WP3 Task 1
Quality analysis workflow for predicted complexesSee Task 7.2
A HADDOCK server for EMWe have seen opportunities for improvements in the scientific approach that we planned. We have also decided to improve the sustainability of the service by moving to a more modern and secure software framework, Flask. Given the importance of both these objectives, we request a delay to M30.
Report on the activities of the help deskSee Task 5.2
Report on Virtual folderSee Task 6.1
Final report on deployment of consolidated platform and the overall architectureThis is a concluding deliverable of WP4, wrapping up all the WP work in the project.
RepositoriesWe have recognised that we will develop a more useful system if we allow more time for user experience studies, and therefore propose a delay in this deliverable.
Common security model designSee Task 4.4 The deliverable describes an overall design of the security model used in the services project-wide.
Report on Assembly queriesSee Task 6.4
Overview (baseline) of services and portals to be integrated into the new VRESee Task 5.3
ProteinCCD with new analysis optionsSee Task 7.1
Report on access and usage statistics of the various servicesMetrics
Consolidated architecture of job submission and interaction with infrastructureSee Task 4.2 The deliverable provides an overview of existing solution and a proposal for a consolidated architecture to be implemented in the project.
Final reportSee WP1 Task 4
Draft sustainability work planSee WP1 Task 5
A REFMAC server for EM and NMRA new opportunity was identified to integrate developments made by partner CIRRMP, which will enable joint structure solution using experimental data from NMR combined with data from X-ray experiments. Progress of this sort is central to West-Life's scientific goals, so it was decided to delay the deliverable in order to accomplish this work.
Interim report on T2.2See WP2 Task 2
Periodic report 1See WP1 Task 3
Report on the access and usage statisticsMetrics
D1.1 Report on Kick off meetingSee WP1 Task 1
Assessment of the life cycle of structural data and comparison with other scientific dataSee WP3 Task 2
VRE-integrated PDBe search and query APIsSee WP6
Organisation of a round table or joint meeting involving ESFRIsSee WP3 Task 1
Update report on activities of the helpdeskSee Task 5.2
ProteinCCD with construct scoring and rankingSee Task 7.1
Report on experience with deployment of consolidated platform and its interaction with infrastructureSee Task 4.1 The deliverable follows milestone M4.2, deployment of the new consolidated platform, and it reports on the initial experience with the deployment.
Publication of a joint document on the usage of structural data in different biomedical RIsSee WP3 Task 1
Multi-core implementation of PDB_REDO serverSee Task 7.1
Sustainability reportSee WP1 Task 5
See Task 6.3
Publikacje
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Journal of Biological Chemistry, Numer 288/6, 2013, Strona(/y) 4424-4435, ISSN 0021-9258
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Scientific Reports, Numer 6/1, 2016, ISSN 2045-2322
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Nature Publishing Group
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Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
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Nature Publishing Group
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PLoS ONE, Numer 8/3, 2013, Strona(/y) e58769, ISSN 1932-6203
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Public Library of Science
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Proteins: Structure, Function, and Bioinformatics, Numer 86, 2018, Strona(/y) 51-66, ISSN 0887-3585
Wydawca:
Wiley-Liss Inc
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10.1002/prot.25407
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Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
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Nature Publishing Group
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Proteins: Structure, Function, and Bioinformatics, Numer 85/3, 2017, Strona(/y) 417-423, ISSN 0887-3585
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Wiley-Liss Inc
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Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
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10.1038/s41467-018-03182-3
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Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
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Nature Publishing Group
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10.1038/s41598-017-08321-2
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Nucleic Acids Research, Numer 46/D1, 2017, Strona(/y) D459-D464, ISSN 0305-1048
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Acta Crystallographica Section D Structural Biology, Numer 74/2, 2018, Strona(/y) 143-151, ISSN 2059-7983
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Protein Science, Numer 27/3, 2018, Strona(/y) 798-808, ISSN 0961-8368
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Cold Spring Harbor Laboratory Press
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Nucleic Acids Research, Numer 46/5, 2018, Strona(/y) 2660-2677, ISSN 0305-1048
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Journal of Computer-Aided Molecular Design, Numer 32/1, 2018, Strona(/y) 175-185, ISSN 0920-654X
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Journal of Structural Biology, Numer 195/2, 2016, Strona(/y) 252-258, ISSN 1047-8477
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Frontiers in Molecular Biosciences, Numer 3, 2016, ISSN 2296-889X
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AIMS Biophysics, Numer 5/1, 2018, Strona(/y) 77-96, ISSN 2377-9098
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Data Science Journal, Numer 17, 2018, ISSN 1683-1470
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JBIC Journal of Biological Inorganic Chemistry, Numer 23/1, 2018, Strona(/y) 71-80, ISSN 0949-8257
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Journal of Biomolecular NMR, 2018, ISSN 0925-2738
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Journal of Food and Drug Analysis, Numer 26/2, 2018, Strona(/y) 696-705, ISSN 1021-9498
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Irina de Sousa Moreira
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Numer 30, 2016
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Ranajeet Ghose
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