The polyA machinery: Elucidating the molecular mechanisms of mRNA polyadenylation, deadenylation and RNA recognition

Methods for merging data sets in electron cryo-microscopy

Auteurs: Max E Wilkinson, Ananthanarayanan Kumar, Ana Casañal
Publié dans: Acta Crystallogr D Struct Biol, Numéro 75(9), 2019, Page(s) 782-791, ISSN 2059-7983
Éditeur: International Union of Crystallography
DOI: 10.1107/s2059798319010519

Roles of mRNA poly(A) tails in regulation of eukaryotic gene expression

Auteurs: Lori A. Passmore, Jeff Coller
Publié dans: Nature Reviews Molecular Cell Biology, Numéro 23, 2022, Page(s) 93-106, ISSN 1471-0072
Éditeur: Nature Publishing Group
DOI: 10.1038/s41580-021-00417-y

RBBP6 activates the pre-mRNA 3′ end processing machinery in humans

Auteurs: Vytaute Boreikaite, Thomas S. Elliott, Jason W. Chin and Lori A. Passmore
Publié dans: Genes and Development, Numéro 36, 2022, Page(s) 210-224, ISSN 0890-9369
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.349223.121

Knowing when to stop: Transcription termination on protein-coding genes by eukaryotic RNAPII

Auteurs: Juan B Rodríguez-Molina, Steven West , Lori A Passmore
Publié dans: Molecular Cell, Numéro 83, 2023, Page(s) 404-415, ISSN 1097-2765
Éditeur: Cell Press
DOI: 10.1016/j.molcel.2022.12.021

Mpe1 senses the binding of pre-mRNA and controls 3′ end processing by CPF

Auteurs: Juan B. Rodriguez-Molina, Francis J. O’Reilly, Holly Fagarasan, Eleanor Sheekey, Sarah Maslen, J. Mark Skehel, Juri Rappsilber, and Lori A. Passmore
Publié dans: Molecular Cell, Numéro 82, 2022, Page(s) 2490-2504, ISSN 1097-2765
Éditeur: Cell Press
DOI: 10.1016/j.molcel.2022.04.021

Current developments in Coot for macromolecular model building of Electron Cryo-microscopy and Crystallographic Data

Auteurs: Ana Casañal, Bernhard Lohkamp, Paul Emsley
Publié dans: Protein Science, Numéro 29(4), 2020, Page(s) 1069-1078, ISSN 1469-896X
Éditeur: The Protein Society
DOI: 10.1002/pro.3791

Analysis of mRNA deadenylation by multi-protein complexes

Auteurs: Michael W. Webster, James A.W. Stowell, Terence T.L. Tang, Lori A. Passmore
Publié dans: Methods, Numéro 126, 2017, Page(s) 95-104, ISSN 1046-2023
Éditeur: Academic Press
DOI: 10.1016/j.ymeth.2017.06.009

Architecture of eukaryotic mRNA 3′-end processing machinery

Auteurs: Ana Casañal, Ananthanarayanan Kumar, Chris H. Hill, Ashley D. Easter, Paul Emsley, Gianluca Degliesposti, Yuliya Gordiyenko, Balaji Santhanam, Jana Wolf, Katrin Wiederhold, Gillian L. Dornan, Mark Skehel, Carol V. Robinson, Lori A. Passmore
Publié dans: Science, Numéro 358/6366, 2017, Page(s) 1056-1059, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.aao6535

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases

Auteurs: Michael W. Webster, Ying-Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Publié dans: Molecular Cell, Numéro 70/6, 2018, Page(s) 1089-1100.e8, ISSN 1097-2765
Éditeur: Cell Press
DOI: 10.1016/j.molcel.2018.05.033

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases

Auteurs: Terence T. L. Tang, James A. W. Stowell, Chris H. Hill, Lori A. Passmore
Publié dans: Nature Structural & Molecular Biology, Numéro 26/6, 2019, Page(s) 433-442, ISSN 1545-9993
Éditeur: Nature Publishing Group
DOI: 10.1038/s41594-019-0227-9

Importance of the Conserved Carboxyl-Terminal CNOT1 Binding Domain to Tristetraprolin Activity In Vivo

Auteurs: Wi S. Lai, Deborah J. Stumpo, Melissa L. Wells, Artiom Gruzdev, Stephanie N. Hicks, Cindo O. Nicholson, Zhengfeng Yang, Roberta Faccio, Michael W. Webster, Lori A. Passmore, Perry J. Blackshear
Publié dans: Molecular and Cellular Biology, Numéro 39/13, 2019, ISSN 0270-7306
Éditeur: American Society for Microbiology
DOI: 10.1128/mcb.00029-19

Mechanistic insights into mRNA 3′-end processing

Auteurs: Ananthanarayanan Kumar, Marcello Clerici, Lena M Muckenfuss, Lori A Passmore, Martin Jinek
Publié dans: Current Opinion in Structural Biology, Numéro 59, 2019, Page(s) 143-150, ISSN 0959-440X
Éditeur: Elsevier BV
DOI: 10.1016/j.sbi.2019.08.001

Interpretation of medium resolution cryoEM maps of multi-protein complexes

Auteurs: Ana Casañal, Shabih Shakeel, Lori A Passmore
Publié dans: Current Opinion in Structural Biology, Numéro 58, 2019, Page(s) 166-174, ISSN 0959-440X
Éditeur: Elsevier BV
DOI: 10.1016/j.sbi.2019.06.009

The APT complex is involved in non-coding RNA transcription and is distinct from CPF

Auteurs: Michael Lidschreiber, Ashley D Easter, Sofia Battaglia, Juan B Rodríguez-Molina, Ana Casañal, Manuel Carminati, Carlo Baejen, Pawel Grzechnik, Kerstin C Maier, Patrick Cramer, Lori A Passmore
Publié dans: Nucleic Acids Research, 2018, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gky845

RNA-binding proteins distinguish between similar sequence motifs to promote targeted deadenylation by Ccr4-Not

Auteurs: Michael W Webster, James AW Stowell, Lori A Passmore
Publié dans: eLife, Numéro 8, 2019, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/elife.40670

Activation of the Endonuclease that Defines mRNA 3′ Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex

Auteurs: Chris H. Hill, Vytautė Boreikaitė, Ananthanarayanan Kumar, Ana Casañal, Peter Kubík, Gianluca Degliesposti, Sarah Maslen, Angelica Mariani, Ottilie von Loeffelholz, Mathias Girbig, Mark Skehel, Lori A. Passmore
Publié dans: Molecular Cell, Numéro 73/6, 2019, Page(s) 1217-1231.e11, ISSN 1097-2765
Éditeur: Cell Press
DOI: 10.1016/j.molcel.2018.12.023

Dynamics in Fip1 regulate eukaryotic mRNA 3′ end processing

Auteurs: Ananthanarayanan Kumar, Conny W.H. Yu, Juan B. Rodríguez-Molina, Xiao-Han Li, Stefan M.V. Freund and Lori A. Passmore
Publié dans: Genes and Development, Numéro 35, 2021, Page(s) 1510-1526, ISSN 0890-9369
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.348671.121

Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae

Auteurs: Matti Turtola, M. Cemre Manav, Ananthanarayanan Kumar, Agnieszka Tudek, Seweryn Mroczek, Paweł S. Krawczyk, Andrzej Dziembowski, Manfred Schmid, Lori A. Passmore, Ana Casañal, Torben Heick Jensen
Publié dans: Genes and Development, Numéro 35, 2021, Page(s) 1290-1303, ISSN 0890-9369
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.348634.121

A direct interaction between CPF and Pol II links RNA 3ʹ-end processing to transcription

Auteurs: Manuel Carminati, M. Cemre Manav, Dom Bellini, Lori A Passmore
Publié dans: bioRxiv, Numéro July 28, 2022, 2022
Éditeur: bioRxiv
DOI: 10.1101/2022.07.28.501803

Specific recognition and ubiquitination of slow-moving ribosomes by human CCR4-NOT

Auteurs: Eva Absmeier, Viswanathan Chandrasekaran, Francis J O’Reilly, James AW Stowell, Juri Rappsilber, Lori A Passmore
Publié dans: bioRxiv, Numéro July 24, 2022, 2022
Éditeur: bioRxiv
DOI: 10.1101/2022.07.24.501325

Gel-Based Analysis of Protein-Nucleic Acid Interactions

Auteurs: James A W Stowell, Terence T L Tang, Maximilian Seidel, Lori A Passmore
Publié dans: Methods Mol Biol, Numéro 2263, 2021, Page(s) 321-339, ISBN 978-1-0716-1196-8
Éditeur: Humana
DOI: 10.1007/978-1-0716-1197-5_14

Recognition of Poly(A) RNA through Its Intrinsic Helical Structure

Auteurs: Terence T.L. Tang, Lori A. Passmore
Publié dans: Cold Spring Harbor Symposia on Quantitative Biology, Numéro 15 April 2020, 2020, Page(s) 039818, ISSN 0091-7451
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/sqb.2019.84.039818

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