The polyA machinery: Elucidating the molecular mechanisms of mRNA polyadenylation, deadenylation and RNA recognition

Methods for merging data sets in electron cryo-microscopy

Autori: Max E Wilkinson, Ananthanarayanan Kumar, Ana Casañal
Pubblicato in: Acta Crystallogr D Struct Biol, Numero 75(9), 2019, Pagina/e 782-791, ISSN 2059-7983
Editore: International Union of Crystallography
DOI: 10.1107/s2059798319010519

Roles of mRNA poly(A) tails in regulation of eukaryotic gene expression

Autori: Lori A. Passmore, Jeff Coller
Pubblicato in: Nature Reviews Molecular Cell Biology, Numero 23, 2022, Pagina/e 93-106, ISSN 1471-0072
Editore: Nature Publishing Group
DOI: 10.1038/s41580-021-00417-y

RBBP6 activates the pre-mRNA 3′ end processing machinery in humans

Autori: Vytaute Boreikaite, Thomas S. Elliott, Jason W. Chin and Lori A. Passmore
Pubblicato in: Genes and Development, Numero 36, 2022, Pagina/e 210-224, ISSN 0890-9369
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.349223.121

Knowing when to stop: Transcription termination on protein-coding genes by eukaryotic RNAPII

Autori: Juan B Rodríguez-Molina, Steven West , Lori A Passmore
Pubblicato in: Molecular Cell, Numero 83, 2023, Pagina/e 404-415, ISSN 1097-2765
Editore: Cell Press
DOI: 10.1016/j.molcel.2022.12.021

Mpe1 senses the binding of pre-mRNA and controls 3′ end processing by CPF

Autori: Juan B. Rodriguez-Molina, Francis J. O’Reilly, Holly Fagarasan, Eleanor Sheekey, Sarah Maslen, J. Mark Skehel, Juri Rappsilber, and Lori A. Passmore
Pubblicato in: Molecular Cell, Numero 82, 2022, Pagina/e 2490-2504, ISSN 1097-2765
Editore: Cell Press
DOI: 10.1016/j.molcel.2022.04.021

Current developments in Coot for macromolecular model building of Electron Cryo-microscopy and Crystallographic Data

Autori: Ana Casañal, Bernhard Lohkamp, Paul Emsley
Pubblicato in: Protein Science, Numero 29(4), 2020, Pagina/e 1069-1078, ISSN 1469-896X
Editore: The Protein Society
DOI: 10.1002/pro.3791

Analysis of mRNA deadenylation by multi-protein complexes

Autori: Michael W. Webster, James A.W. Stowell, Terence T.L. Tang, Lori A. Passmore
Pubblicato in: Methods, Numero 126, 2017, Pagina/e 95-104, ISSN 1046-2023
Editore: Academic Press
DOI: 10.1016/j.ymeth.2017.06.009

Architecture of eukaryotic mRNA 3′-end processing machinery

Autori: Ana Casañal, Ananthanarayanan Kumar, Chris H. Hill, Ashley D. Easter, Paul Emsley, Gianluca Degliesposti, Yuliya Gordiyenko, Balaji Santhanam, Jana Wolf, Katrin Wiederhold, Gillian L. Dornan, Mark Skehel, Carol V. Robinson, Lori A. Passmore
Pubblicato in: Science, Numero 358/6366, 2017, Pagina/e 1056-1059, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.aao6535

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases

Autori: Michael W. Webster, Ying-Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Pubblicato in: Molecular Cell, Numero 70/6, 2018, Pagina/e 1089-1100.e8, ISSN 1097-2765
Editore: Cell Press
DOI: 10.1016/j.molcel.2018.05.033

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases

Autori: Terence T. L. Tang, James A. W. Stowell, Chris H. Hill, Lori A. Passmore
Pubblicato in: Nature Structural & Molecular Biology, Numero 26/6, 2019, Pagina/e 433-442, ISSN 1545-9993
Editore: Nature Publishing Group
DOI: 10.1038/s41594-019-0227-9

Importance of the Conserved Carboxyl-Terminal CNOT1 Binding Domain to Tristetraprolin Activity In Vivo

Autori: Wi S. Lai, Deborah J. Stumpo, Melissa L. Wells, Artiom Gruzdev, Stephanie N. Hicks, Cindo O. Nicholson, Zhengfeng Yang, Roberta Faccio, Michael W. Webster, Lori A. Passmore, Perry J. Blackshear
Pubblicato in: Molecular and Cellular Biology, Numero 39/13, 2019, ISSN 0270-7306
Editore: American Society for Microbiology
DOI: 10.1128/mcb.00029-19

Mechanistic insights into mRNA 3′-end processing

Autori: Ananthanarayanan Kumar, Marcello Clerici, Lena M Muckenfuss, Lori A Passmore, Martin Jinek
Pubblicato in: Current Opinion in Structural Biology, Numero 59, 2019, Pagina/e 143-150, ISSN 0959-440X
Editore: Elsevier BV
DOI: 10.1016/j.sbi.2019.08.001

Interpretation of medium resolution cryoEM maps of multi-protein complexes

Autori: Ana Casañal, Shabih Shakeel, Lori A Passmore
Pubblicato in: Current Opinion in Structural Biology, Numero 58, 2019, Pagina/e 166-174, ISSN 0959-440X
Editore: Elsevier BV
DOI: 10.1016/j.sbi.2019.06.009

The APT complex is involved in non-coding RNA transcription and is distinct from CPF

Autori: Michael Lidschreiber, Ashley D Easter, Sofia Battaglia, Juan B Rodríguez-Molina, Ana Casañal, Manuel Carminati, Carlo Baejen, Pawel Grzechnik, Kerstin C Maier, Patrick Cramer, Lori A Passmore
Pubblicato in: Nucleic Acids Research, 2018, ISSN 0305-1048
Editore: Oxford University Press
DOI: 10.1093/nar/gky845

RNA-binding proteins distinguish between similar sequence motifs to promote targeted deadenylation by Ccr4-Not

Autori: Michael W Webster, James AW Stowell, Lori A Passmore
Pubblicato in: eLife, Numero 8, 2019, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.40670

Activation of the Endonuclease that Defines mRNA 3′ Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex

Autori: Chris H. Hill, Vytautė Boreikaitė, Ananthanarayanan Kumar, Ana Casañal, Peter Kubík, Gianluca Degliesposti, Sarah Maslen, Angelica Mariani, Ottilie von Loeffelholz, Mathias Girbig, Mark Skehel, Lori A. Passmore
Pubblicato in: Molecular Cell, Numero 73/6, 2019, Pagina/e 1217-1231.e11, ISSN 1097-2765
Editore: Cell Press
DOI: 10.1016/j.molcel.2018.12.023

Dynamics in Fip1 regulate eukaryotic mRNA 3′ end processing

Autori: Ananthanarayanan Kumar, Conny W.H. Yu, Juan B. Rodríguez-Molina, Xiao-Han Li, Stefan M.V. Freund and Lori A. Passmore
Pubblicato in: Genes and Development, Numero 35, 2021, Pagina/e 1510-1526, ISSN 0890-9369
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.348671.121

Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae

Autori: Matti Turtola, M. Cemre Manav, Ananthanarayanan Kumar, Agnieszka Tudek, Seweryn Mroczek, Paweł S. Krawczyk, Andrzej Dziembowski, Manfred Schmid, Lori A. Passmore, Ana Casañal, Torben Heick Jensen
Pubblicato in: Genes and Development, Numero 35, 2021, Pagina/e 1290-1303, ISSN 0890-9369
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.348634.121

A direct interaction between CPF and Pol II links RNA 3ʹ-end processing to transcription

Autori: Manuel Carminati, M. Cemre Manav, Dom Bellini, Lori A Passmore
Pubblicato in: bioRxiv, Numero July 28, 2022, 2022
Editore: bioRxiv
DOI: 10.1101/2022.07.28.501803

Specific recognition and ubiquitination of slow-moving ribosomes by human CCR4-NOT

Autori: Eva Absmeier, Viswanathan Chandrasekaran, Francis J O’Reilly, James AW Stowell, Juri Rappsilber, Lori A Passmore
Pubblicato in: bioRxiv, Numero July 24, 2022, 2022
Editore: bioRxiv
DOI: 10.1101/2022.07.24.501325

Gel-Based Analysis of Protein-Nucleic Acid Interactions

Autori: James A W Stowell, Terence T L Tang, Maximilian Seidel, Lori A Passmore
Pubblicato in: Methods Mol Biol, Numero 2263, 2021, Pagina/e 321-339, ISBN 978-1-0716-1196-8
Editore: Humana
DOI: 10.1007/978-1-0716-1197-5_14

Recognition of Poly(A) RNA through Its Intrinsic Helical Structure

Autori: Terence T.L. Tang, Lori A. Passmore
Pubblicato in: Cold Spring Harbor Symposia on Quantitative Biology, Numero 15 April 2020, 2020, Pagina/e 039818, ISSN 0091-7451
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/sqb.2019.84.039818

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