Killer plasmids as drivers of genetic code changes during yeast evolution

Informazioni relative al progetto

CODEKILLER

ID dell’accordo di sovvenzione: 789341

DOI

10.3030/789341

Progetto chiuso

Data della firma CE 25 Maggio 2018

Data di avvio 1 Ottobre 2018

Data di completamento 31 Marzo 2025

Finanziato da

• EXCELLENT SCIENCE - European Research Council (ERC)

Costo totale

€ 2 368 356,00

Contributo UE

€ 2 368 356,00

Coordinato da

UNIVERSITY COLLEGE DUBLIN, NATIONAL UNIVERSITY OF IRELAND, DUBLIN
Ireland

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Peer reviewed articles (17)

Analysis of clinical<i>Candida parapsilosis</i>isolates reveals copy number variation in key fluconazole resistance genes

Autori: Sean Bergin, Laura A. Doorley, Jeffrey M. Rybak, Kenneth H. Wolfe, Geraldine Butler, Christina A. Cuomo, P. David Rogers
Pubblicato in: Antimicrobial Agents and Chemotherapy, Numero 68, 2023, Pagina/e aac.01619-23, ISSN 1098-6596
Editore: American Society for Microbiology
DOI: 10.1101/2023.12.13.571446

Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins

Autori: Benjamin Offei, Stephanie Braun-Galleani, Anjan Venkatesh, William T. Casey, Kevin E. O’Connor, Kevin P. Byrne, Kenneth H. Wolfe
Pubblicato in: PLOS Biology, Numero 20, 2022, Pagina/e e3001877, ISSN 1545-7885
Editore: Public Library of Science (PLoS)
DOI: 10.1371/journal.pbio.3001877

Mating-Type Switching in Budding Yeasts, from Flip/Flop Inversion to Cassette Mechanisms

Autori: Kenneth H. Wolfe, Geraldine Butler
Pubblicato in: Microbiology and Molecular Biology Reviews, Numero 86, 2022, Pagina/e mmbr.00007-21, ISSN 1092-2172
Editore: American Society for Microbiology
DOI: 10.1128/mmbr.00007-21

Draft genome sequence of the yeast <i>Schwanniomyces capriottii</i> strain UCD805, isolated from soil in Ireland

Autori: Padraic G. Heneghan, Adam P. Ryan, Eoin Ó Cinnéide, Jordan Davies, Cathal Bracken, Victoria Ogundipe, Maria Doheny, Liam Lenihan, Anastasia Passalaris, Rosalind Walker, Kenneth H. Wolfe, Geraldine Butler, Kevin P. Byrne
Pubblicato in: Microbiology Resource Announcements, Numero 13, 2024, Pagina/e mra.01073-23, ISSN 2576-098X
Editore: American Society for Microbiology
DOI: 10.1128/mra.01073-23

Zymocin-like killer toxin gene clusters in the nuclear genomes of filamentous fungi

Autori: Padraic G. Heneghan, Letal I. Salzberg, Kenneth H. Wolfe
Pubblicato in: Fungal Genetics and Biology, Numero 176, 2025, Pagina/e 103957, ISSN 1087-1845
Editore: Academic Press
DOI: 10.1016/j.fgb.2024.103957

WHO elements – A new category of selfish genetic elements at the borderline between homing elements and transposable elements

Autori: Matthieu Osborne, Athaliah Fubara, Eoin Ó Cinnéide, Aisling Y. Coughlan, Kenneth H. Wolfe
Pubblicato in: Seminars in Cell &amp; Developmental Biology, Numero 163, 2024, Pagina/e 2-13, ISSN 1084-9521
Editore: Academic Press
DOI: 10.1016/j.semcdb.2024.04.001

Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the <i>Ogataea polymorpha</i> species complex

Autori: Sara J Hanson, Eoin Ó Cinnéide, Letal I Salzberg, Kenneth H Wolfe, Jamie McGowan, David A Fitzpatrick, Kate Matlin
Pubblicato in: G3, Numero 11, 2024, Pagina/e jkab211, ISSN 2160-1836
Editore: Genetics Society of America
DOI: 10.1093/g3journal/jkab211

Genome sequences of two isolates of the yeast <i>Candida zeylanoides</i> : UCD849 from soil in Ireland, and AWD from an African wild dog

Autori: Richard W. McLaughlin, Conor Hession, Sean Bergin, Aoife Cosgrove, Andrew Dowd, Niall Garvey, Gabrielle Litovskich, Evita Osaigbovo, Denis Popa, Cynthia Thuku, Geraldine Butler, Kenneth H. Wolfe, Kevin P. Byrne
Pubblicato in: Microbiology Resource Announcements, Numero 13, 2024, Pagina/e mra.01081-23, ISSN 2576-098X
Editore: American Society for Microbiology
DOI: 10.1128/mra.01081-23

Genome Analysis of a Newly Discovered Yeast Species, Hanseniaspora menglaensis

Autori: Adam P. Ryan, Marizeth Groenewald, Maudy Th. Smith, Cian Holohan, Teun Boekhout, Kenneth H. Wolfe, Geraldine Butler
Pubblicato in: Journal of Fungi, Numero 10, 2025, Pagina/e 180, ISSN 2309-608X
Editore: MDPI AG
DOI: 10.3390/jof10030180

Evolution of the Genetic Code in the Ascoideales (CUG-Ser2) Yeast Clade: The Ancestral tRNA-Leu(CAG) Gene Is Retained in Most <i>Saccharomycopsis</i> Species but Is Nonessential and Not Used for Translation

Autori: Eoin Ó Cinnéide, Caitriona Scaife, Eugène T Dillon, Kenneth H Wolfe
Pubblicato in: Genome Biology and Evolution, Numero 16, 2024, Pagina/e evae166, ISSN 1759-6653
Editore: Oxford University Press
DOI: 10.1093/gbe/evae166

The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family

Autori: Aisling Y Coughlan, Lisa Lombardi, Stephanie Braun-Galleani, Alexandre AR Martos, Virginie Galeote, Frédéric Bigey, Sylvie Dequin, Kevin P Byrne, Kenneth H Wolfe
Pubblicato in: eLife, Numero 9, 2020, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.55336

Origin of Lactose Fermentation in Kluyveromyces lactis by Interspecies Transfer of a Neo-functionalized Gene Cluster during Domestication

Autori: Javier A. Varela, Martina Puricelli, Raúl A. Ortiz-Merino, Romina Giacomobono, Stephanie Braun-Galleani, Kenneth H. Wolfe, John P. Morrissey
Pubblicato in: Current Biology, Numero 29/24, 2019, Pagina/e 4284-4290.e2, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2019.10.044

Polymorphic centromere locations in the pathogenic yeast Candida parapsilosis

Autori: Mihaela Ola, Caoimhe E. O'Brien, Aisling Y. Coughlan, Qinxi Ma, Paul D. Donovan, Kenneth H. Wolfe, Geraldine Butler
Pubblicato in: Genome Research, Numero 30/5, 2020, Pagina/e 684-696, ISSN 1088-9051
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.257816.119

Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution

Autori: Tadeusz Krassowski, Jacek Kominek, Xing-Xing Shen, Dana A. Opulente, Xiaofan Zhou, Antonis Rokas, Chris Todd Hittinger, Kenneth H. Wolfe
Pubblicato in: Current Biology, Numero 29/15, 2019, Pagina/e 2555-2562.e8, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2019.06.056

Giant GAL gene clusters for the melibiose‐galactose pathway in Torulaspora

Autori: Anjan Venkatesh, Anthony L. Murray, Aisling Y. Coughlan, Kenneth H. Wolfe
Pubblicato in: Yeast, Numero 38/1, 2021, Pagina/e 117-126, ISSN 0749-503X
Editore: John Wiley & Sons Inc.
DOI: 10.1002/yea.3532

Ancient origin and high diversity of zymocin-like killer toxins in the budding yeast subphylum

Autori: Padraic G. Heneghan, Letal I. Salzberg, Eoin Ó Cinnéide, Jan A. Dewald, Christina E. Weinberg, Kenneth H. Wolfe
Pubblicato in: Proceedings of the National Academy of Sciences of the USA, Numero 122, 2025, Pagina/e e2419860122, ISSN 1091-6490
Editore: National Academy of Sciences
DOI: 10.1101/2024.09.27.615389

A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family

Autori: Letal I. Salzberg, Alexandre A. R. Martos, Lisa Lombardi, Lars S. Jermiin, Alfonso Blanco, Kevin P. Byrne, Kenneth H. Wolfe
Pubblicato in: PLOS Genetics, Numero 18, 2022, Pagina/e e1010525, ISSN 1553-7404
Editore: Public Library of Science (PLoS)
DOI: 10.1371/journal.pgen.1010525