Reconstruction and validation of entire virus model with complete genome from mixed resolution cryo-EM density
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Autori:
Vladimir S. Farafonov, Michael Stich, Dmitry Nerukh
Pubblicato in:
Faraday Discussions, Numero 240, 2024, Pagina/e 152-167, ISSN 1359-6640
Editore:
Royal Society of Chemistry
DOI:
10.1039/d2fd00053a
Complete Virion Simulated: All-Atom Model of an MS2 Bacteriophage with Native Genome
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Autori:
Vladimir S. Farafonov, Michael Stich, Dmitry A. Nerukh
Pubblicato in:
Journal of Chemical Theory and Computation, Numero 19, 2023, Pagina/e 7924-7933, ISSN 1549-9618
Editore:
American Chemical Society
DOI:
10.1021/acs.jctc.3c00846
Fitness Effect of the Isoniazid Resistance Mutation S315T of the Catalase-Peroxidase Enzyme KatG of <i>Mycobacterium tuberculosis</i>
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Autori:
Ugo Bastolla, Mikhail Rotkevich, Miguel Arenas, Manuel Arrayás, Marine Dogonadze, Anastasia Lavrova, Jorge Molina-Sejas, Michaël Tadesse, Ramón Xulvi-Brunet, Jonathan A G Cox, Dmitry Nerukh, Natalia González-Benítez, Michael Stich
Pubblicato in:
Genome Biology and Evolution, Numero 17, 2025, ISSN 1759-6653
Editore:
Oxford University Press
DOI:
10.1093/gbe/evaf120
WATER DYNAMICS AND STABILITY OF MAJOR BLOOD PROTEINS AT PRE-DENATURATION STAGE
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Autori:
Natalia Atamas, Vitalii Y. Bardik, Serhiy Komisarenko, Yevgen M. Makogonenko, Edward V. Lugovskoi, Nikolai P. Malomuzh, Dmitry A. Nerukh, Pavlo K. Solonin
Pubblicato in:
AAPP, 2019, ISSN 1825-1242
Editore:
AAPP
DOI:
10.1478/aapp.97s2a16
Influence of various colloidal surfactants on the stability of MS2 bacteriophage suspension. The charge distribution on the PCV2 virus surface
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Autori:
Natalya Vodolazkaya, Anna Laguta, Vladimir Farafonov, Marina Nikolskaya, Zita Balklava, Reza Khayat, Michael Stich, Nikolay Mchedlov-Petrossyan, Dmitry Nerukh
Pubblicato in:
Journal of Molecular Liquids, Numero 387, 2025, Pagina/e 122644, ISSN 0167-7322
Editore:
Elsevier BV
DOI:
10.1016/j.molliq.2023.122644
The Multiscale Hybrid Method with a Localized Constraint. II. Hybrid Equations of Motion Based on Variational Principles
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Autori:
M. Bakumenko, V. Bardik, V. Farafonov, D. Nerukh
Pubblicato in:
Ukrainian Journal of Physics, Numero 69, 2024, Pagina/e 269, ISSN 2071-0194
Editore:
National Academy of Sciences of Ukraine (Co. LTD Ukrinformnauka) (Publications)
DOI:
10.15407/ujpe69.4.269
The Multiscale Hybrid Method with a Localized Constraint. I. A Modified Control Volume Function for the Hybridized Mass and Momentum Equations
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Autori:
M. Bakumenko, V. Bardik, D. Nerukh
Pubblicato in:
Ukrainian Journal of Physics, Numero 68, 2024, Pagina/e 517, ISSN 2071-0194
Editore:
National Academy of Sciences of Ukraine (Co. LTD Ukrinformnauka) (Publications)
DOI:
10.15407/ujpe68.8.517
Protein–Ligand Dissociation Rate Constant from All-Atom Simulation
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Autori:
Ekaterina Maximova, Eugene B. Postnikov, Anastasia I. Lavrova, Vladimir Farafonov, Dmitry Nerukh
Pubblicato in:
The Journal of Physical Chemistry Letters, Numero 12, 2023, Pagina/e 10631-10636, ISSN 1948-7185
Editore:
American Chemical Society
DOI:
10.1021/acs.jpclett.1c02952
