Publications Peer reviewed articles (10) Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Author(s): Mireia Coscolla; Daniela Brites; Daniela Brites; Fabrizio Menardo; Fabrizio Menardo; Chloé Loiseau; Chloé Loiseau; Sonia Borrell; Sonia Borrell; Isaac Darko Otchere; Adwoa Asante-Poku; Prince Asare; Leonor Sánchez-Busó; Leonor Sánchez-Busó; Florian Gehre; C. N’Dira Sanoussi; Martin Antonio; Affolabi Dissou; Paula Ruiz-Rodríguez; Janet A. M. Fyfe; Erik C. Böttger; Patrick Becket; Stefan N Published in: Microbial Genomics, Issue 2, 2021, ISSN 2057-5858 Publisher: Microbial Society DOI: 10.17863/cam.64924 Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance Author(s): Trauner A, Banaei-Esfahani A, Gygli SM, Warmer P, Feldmann J, Zampieri M, Borrell S, Collins BC, Beisel C, Aebersold R, Gagneux S. Published in: Antimicrob Agents Chemother, 2021, ISSN 0021-9193 Publisher: American Society for Microbiology DOI: 10.1128/aac.00504-21 Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Author(s): C. N’Dira Sanoussi; C. N’Dira Sanoussi; Mireia Coscolla; Boatema Ofori-Anyinam; Isaac Darko Otchere; Martin Antonio; Stefan Niemann; Julian Parkhill; Julian Parkhill; Simon R. Harris; Dorothy Yeboah-Manu; Sebastien Gagneux; Sebastien Gagneux; Leen Rigouts; Leen Rigouts; Dissou Affolabi; Bouke C. de Jong; Conor J. Meehan; Conor J. Meehan Published in: Microbial Genomics, Issue 2, 2021, ISSN 2057-5858 Publisher: Microbiology Society DOI: 10.1099/mgen.0.000437 Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia Author(s): Nino Maghradze; Levan Jugheli; Sonia Borrell; Nestani Tukvadze; Russell R. Kempker; Henry M. Blumberg; Sebastien Gagneux Published in: PLoS One, Issue 1, 2022, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.5451/unibas-ep90637 Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim Author(s): Fabrizio Menardo; Fabrizio Menardo; Liliana K. Rutaihwa; Liliana K. Rutaihwa; Michaela Zwyer; Michaela Zwyer; Sonia Borrell; Sonia Borrell; Iñaki Comas; Emilyn Costa Conceição; Emilyn Costa Conceição; Mireia Coscolla; Helen Cox; Moses Joloba; Horng-Yunn Dou; Julia Feldmann; Julia Feldmann; Lukas Fenner; Lukas Fenner; Lukas Fenner; Janet A. M. Fyfe; Qian Gao; Darío García de Viedma; Alberto Published in: F1000Research, Issue 1, 2021, ISSN 2046-1402 Publisher: F1000 Research Ltd. DOI: 10.12688/f1000research.28318.2 Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study Author(s): Zürcher K, Reichmuth ML, Ballif M, Loiseau C, Borrell S, Reinhard M, Skrivankova V, Hömke R, Sander P, Avihingsanon A, Abimiku AG, Marcy O, Collantes J, Carter EJ, Wilkinson RJ, Cox H, Yotebieng M, Huebner R, Fenner L, Böttger EC, Gagneux S, Egger M. Published in: Lancet Microbe, 2021, ISSN 0140-6736 Publisher: The Lancet Publishing Group DOI: 10.1016/s2666-5247(21)00044-6 A new nomenclature for the livestock-associated Mycobacterium tuberculosis complex based on phylogenomics Author(s): Michaela Zwyer; Cengiz Çavusoglu; Giovanni Ghielmetti; Maria Lodovica Pacciarini; Erika Scaltriti; Dick Van Soolingen; Anna Dötsch; Miriam Reinhard; Sebastien Gagneux; Daniela Brites Published in: Open Research Europe, Issue 1, 2021, ISSN 2732-5121 Publisher: European Commission DOI: 10.12688/openreseurope.14029.2 The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis. Author(s): Rhastin A D Castro; Rhastin A D Castro; Sonia Borrell; Sonia Borrell; Sebastien Gagneux; Sebastien Gagneux Published in: FEMS Microbiology Reviews, Issue 6, 2021, ISSN 0168-6445 Publisher: Blackwell DOI: 10.1093/femsre/fuaa071 Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations Author(s): Zhi Ming Xu; Sina Rüeger; Michaela Zwyer; Daniela Brites; Hellen Hiza; Miriam Reinhard; Liliana Rutaihwa; Sonia Borrell; Faima Isihaka; Hosiana Temba; Thomas Maroa; Rastard Naftari; Jerry Hella; Mohamed Sasamalo; Klaus Reither; Damien Portevin; Sebastien Gagneux; Jacques Fellay Published in: PLoS Computational Biology, Issue 1, 2022, Page(s) e1009628, ISSN 1553-734X Publisher: Public Library of Science DOI: 10.1371/journal.pcbi.1009628 Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis Author(s): Gygli SM, Loiseau C, Jugheli L, Adamia N, Trauner A, Reinhard M, Ross A, Borrell S, Aspindzelashvili R, Maghradze N, Reither K, Beisel C, Tukvadze N, Avaliani Z, Gagneux S Published in: Nature Medicine, 2021, ISSN 0028-0836 Publisher: Nature Publishing Group DOI: 10.1038/s41591-021-01358-x Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
