Linking within-host and between-host evolution of multidrug-resistant Mycobacterium tuberculosis

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Publications

Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history.

Auteurs: Mireia Coscolla; Daniela Brites; Daniela Brites; Fabrizio Menardo; Fabrizio Menardo; Chloé Loiseau; Chloé Loiseau; Sonia Borrell; Sonia Borrell; Isaac Darko Otchere; Adwoa Asante-Poku; Prince Asare; Leonor Sánchez-Busó; Leonor Sánchez-Busó; Florian Gehre; C. N’Dira Sanoussi; Martin Antonio; Affolabi Dissou; Paula Ruiz-Rodríguez; Janet A. M. Fyfe; Erik C. Böttger; Patrick Becket; Stefan N
Publié dans: Microbial Genomics, Numéro 2, 2021, ISSN 2057-5858
Éditeur: Microbial Society
DOI: 10.17863/cam.64924

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance

Auteurs: Trauner A, Banaei-Esfahani A, Gygli SM, Warmer P, Feldmann J, Zampieri M, Borrell S, Collins BC, Beisel C, Aebersold R, Gagneux S.
Publié dans: Antimicrob Agents Chemother, 2021, ISSN 0021-9193
Éditeur: American Society for Microbiology
DOI: 10.1128/aac.00504-21

Effect of compensatory evolution in the emergence and transmission of rifampicin-resistant Mycobacterium tuberculosis in Cape Town, South Africa: a genomic epidemiology study

Auteurs: Galo A Goig, Fabrizio Menardo, Zubeida Salaam-Dreyer, Anzaan Dippenaar, Elizabeth M Streicher, Johnny Daniels, Anja Reuter, Sonia Borrell, Miriam Reinhard, Anna Doetsch, Christian Beisel, Robin M Warren, Helen Cox, Sebastien Gagneux
Publié dans: The Lancet Microbe, Numéro 4, 2023, Page(s) e506-e515, ISSN 2666-5247
Éditeur: Elsevier
DOI: 10.1016/s2666-5247(23)00110-6

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv.

Auteurs: C. N’Dira Sanoussi; C. N’Dira Sanoussi; Mireia Coscolla; Boatema Ofori-Anyinam; Isaac Darko Otchere; Martin Antonio; Stefan Niemann; Julian Parkhill; Julian Parkhill; Simon R. Harris; Dorothy Yeboah-Manu; Sebastien Gagneux; Sebastien Gagneux; Leen Rigouts; Leen Rigouts; Dissou Affolabi; Bouke C. de Jong; Conor J. Meehan; Conor J. Meehan
Publié dans: Microbial Genomics, Numéro 2, 2021, ISSN 2057-5858
Éditeur: Microbiology Society
DOI: 10.1099/mgen.0.000437

HIV co-infection is associated with reduced<i>Mycobacterium tuberculosis</i>transmissibility in sub-Saharan Africa

Auteurs: Etthel M. Windels, Eddie M. Wampande, Moses L. Joloba, W. Henry Boom, Galo A. Goig, Helen Cox, Jerry Hella, Sonia Borrell, Sebastien Gagneux, Daniela Brites, Tanja Stadler
Publié dans: PLoS Pathogens, 2023, ISSN 1553-7374
Éditeur: PLOS
DOI: 10.1101/2023.09.12.557301

Developing customized stepwise MIRU-VNTR typing for tuberculosis surveillance in Georgia

Auteurs: Nino Maghradze; Levan Jugheli; Sonia Borrell; Nestani Tukvadze; Russell R. Kempker; Henry M. Blumberg; Sebastien Gagneux
Publié dans: PLoS One, Numéro 1, 2022, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.5451/unibas-ep90637

Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim

Auteurs: Fabrizio Menardo; Fabrizio Menardo; Liliana K. Rutaihwa; Liliana K. Rutaihwa; Michaela Zwyer; Michaela Zwyer; Sonia Borrell; Sonia Borrell; Iñaki Comas; Emilyn Costa Conceição; Emilyn Costa Conceição; Mireia Coscolla; Helen Cox; Moses Joloba; Horng-Yunn Dou; Julia Feldmann; Julia Feldmann; Lukas Fenner; Lukas Fenner; Lukas Fenner; Janet A. M. Fyfe; Qian Gao; Darío García de Viedma; Alberto
Publié dans: F1000Research, Numéro 1, 2021, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.28318.2

Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study

Auteurs: Zürcher K, Reichmuth ML, Ballif M, Loiseau C, Borrell S, Reinhard M, Skrivankova V, Hömke R, Sander P, Avihingsanon A, Abimiku AG, Marcy O, Collantes J, Carter EJ, Wilkinson RJ, Cox H, Yotebieng M, Huebner R, Fenner L, Böttger EC, Gagneux S, Egger M.
Publié dans: Lancet Microbe, 2021, ISSN 0140-6736
Éditeur: The Lancet Publishing Group
DOI: 10.1016/s2666-5247(21)00044-6

A new nomenclature for the livestock-associated Mycobacterium tuberculosis complex based on phylogenomics

Auteurs: Michaela Zwyer; Cengiz Çavusoglu; Giovanni Ghielmetti; Maria Lodovica Pacciarini; Erika Scaltriti; Dick Van Soolingen; Anna Dötsch; Miriam Reinhard; Sebastien Gagneux; Daniela Brites
Publié dans: Open Research Europe, Numéro 1, 2021, ISSN 2732-5121
Éditeur: European Commission
DOI: 10.12688/openreseurope.14029.2

The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis.

Auteurs: Rhastin A D Castro; Rhastin A D Castro; Sonia Borrell; Sonia Borrell; Sebastien Gagneux; Sebastien Gagneux
Publié dans: FEMS Microbiology Reviews, Numéro 6, 2021, ISSN 0168-6445
Éditeur: Blackwell
DOI: 10.1093/femsre/fuaa071

Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations

Auteurs: Zhi Ming Xu; Sina Rüeger; Michaela Zwyer; Daniela Brites; Hellen Hiza; Miriam Reinhard; Liliana Rutaihwa; Sonia Borrell; Faima Isihaka; Hosiana Temba; Thomas Maroa; Rastard Naftari; Jerry Hella; Mohamed Sasamalo; Klaus Reither; Damien Portevin; Sebastien Gagneux; Jacques Fellay
Publié dans: PLoS Computational Biology, Numéro 1, 2022, Page(s) e1009628, ISSN 1553-734X
Éditeur: Public Library of Science
DOI: 10.1371/journal.pcbi.1009628

Drug-induced differential culturability in diverse strains of Mycobacterium tuberculosis

Auteurs: Valerie F. A. March, Nino Maghradze, Kakha Mchedlishvili, Teona Avaliani, Rusudan Aspindzelashvili, Zaza Avaliani, Maia Kipiani, Nestani Tukvadze, Levan Jugheli, Selim Bouaouina, Anna Doetsch, Galo A. Goig, Sebastien Gagneux, Sonia Borrell
Publié dans: Scientific Reports, Numéro 15, 2025, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-024-85092-7

The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot

Auteurs: Chloé Loiseau, Etthel M. Windels, Sebastian M. Gygli, Levan Jugheli, Nino Maghradze, Daniela Brites, Amanda Ross, Galo Goig, Miriam Reinhard, Sonia Borrell, Andrej Trauner, Anna Dötsch, Rusudan Aspindzelashvili, Rebecca Denes, Klaus Reither, Christian Beisel, Nestani Tukvadze, Zaza Avaliani, Tanja Stadler, Sebastien Gagneux
Publié dans: Nature Communications, Numéro 14, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-37719-y

Transmission as a Key Driver of Resistance to the New Tuberculosis Drugs

Auteurs: Galo A. Goig, Chloé Loiseau, Nino Maghradze, Kakha Mchedlishvili, Teona Avaliani, Daniela Brites, Sonia Borrell, Rusudan Aspindzelashvili, Zaza Avaliani, Maia Kipiani, Nestani Tukvadze, Levan Jugheli, Sebastien Gagneux
Publié dans: New England Journal of Medicine, Numéro 392, 2025, Page(s) 97-99, ISSN 0028-4793
Éditeur: Massachusetts Medical Society
DOI: 10.1056/nejmc2404644

Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania

Auteurs: Michaela Zwyer, Liliana K. Rutaihwa, Etthel Windels, Jerry Hella, Fabrizio Menardo, Mohamed Sasamalo, Gregor Sommer, Lena Schmülling, Sonia Borrell, Miriam Reinhard, Anna Dötsch, Hellen Hiza, Christoph Stritt, George Sikalengo, Lukas Fenner, Bouke C. De Jong, Midori Kato-Maeda, Levan Jugheli, Joel D. Ernst, Stefan Niemann, Leila Jeljeli, Marie Ballif, Matthias Egger, Niaina Rakotosamimanana, Dor
Publié dans: PLOS Pathogens, Numéro 19, 2023, Page(s) e1010893, ISSN 1553-7374
Éditeur: PLOS
DOI: 10.1371/journal.ppat.1010893

Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis

Auteurs: Gygli SM, Loiseau C, Jugheli L, Adamia N, Trauner A, Reinhard M, Ross A, Borrell S, Aspindzelashvili R, Maghradze N, Reither K, Beisel C, Tukvadze N, Avaliani Z, Gagneux S
Publié dans: Nature Medicine, 2021, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41591-021-01358-x

How do monomorphic bacteria evolve? The Mycobacterium tuberculosis complex and the awkward population genetics of extreme clonality

Auteurs: Sebastien Gagneux, Christoph Stritt
Publié dans: Peer Community In Evolutionary Biology, 2022, ISSN 2551-668X
Éditeur: Peer Community In Evolutionary Biology
DOI: 10.32942/x2gw2p

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