Neuropeptides represent a large and diverse class of signaling molecules in the brain that have important functions in experience-dependent plasticity. Understanding how experience impacts the structure and organization of this signaling network, however, is a daunting task due to the diversity and complexity of neuropeptide signaling pathways in the brain. We have reconstructed the neuropeptide network of the entire C. elegans nervous system in silico to penetrate this complexity. This “neuropeptide connectome” yields an unprecedented bird’s-eye-view on how neuropeptide signaling pathways are organized within the animal brain, in addition to having uncovered a variety of neuropeptidergic pathways that link specific brain circuits, like the oxygen-sensing circuit, to other brain areas. We have identified experience-dependent changes in neuropeptide network structure, tested animals defective for these neuropeptides and their receptors for different oxygen-dependent behaviors, and identified several neuropeptide systems that drive the behavioral adaptations following long-term exposure to aversive oxygen levels. We are now deploying tools to directly monitor neuropeptide signaling to understand which brain regions are affected upon different types of aversive experience. Specifically, we implemented a novel transcription-based activation sensor that produces a stable fluorescent readout upon neuropeptide receptor activation. The sensor allows monitoring receptor activation upon exogenous application of neuropeptide ligands, in response to optogenetically-induced neuropeptide release, and under conditions entailing endogenous neuropeptide release. Given it can be modularly applied to different neuropeptide receptors, we are validating its use for a panel of candidate receptors and circuits. Finally, we are using direct genetic manipulations and neural activity recordings to understand how the activity of target brain regions is shaped by experience-dependent changes in neuropeptide signaling, and how this ultimately affects behavior. Altogether, these findings provide a scaffold to further unravel how aversive experience influences the structure of neuropeptidergic signaling networks and mediates long-term behavioral changes. Moreover, our newly developed technologies can be used to study neuropeptide signaling in a variety of biological contexts with unprecedented detail.