DEEP – SOFTWARE FOR EXASCALE ARCHITECTURES | DEEP-SEA | Project | Results | H2020 | CORDIS

Rezultaty

Definition of the quality control processes and templates for internal verification and document review for all project results and deliverables

Interoperability development

Detailed report on proven ability of GPISpace to support the execution of MPI or GASPI programs spanning over multiple nodes and detailed performance study of MPIGPU performance bottleneck

Application use cases and traces

Use cases integrated in JUBE profile and trace files provided to other WPs

Initial application co-design input

Documents requirements of all applications for codesign includes all data analytics SW requirements compute memory communication performance footprints communication patterns etc

Applications use of DEEP-SEA software stack

Details the tools SW components and programming models that each application will use with further codesign input on the needed functionalities

Software specification

Specification of the complete SW stack based on the requirements collected from WPs 1 to 5 This comprises WP3internal interfaces and dependencies as well as the interplay with WPs 2 4 and 5

Repository for training material

Design, access information and initial contents for the training repository.

Initial node-level programming environment

Initial release and detailed report of node-level programming environment. This SW release will enable early work by the application partners

Malleability concept and early prototype

Intermediate release and detailed report on malleability including concept and prototype version of MPIsessionbased malleability within MPI

Communication and data management plan, toolkit and owned channels

Details of the communication and brand strategy including a toolkit with materials like logos and collateral templates and DEEPSEA communication channels It contains also the data management plan as part of the Open Research Data Pilot ORDP

Publikacje

A Compiler Approach to Automatic Multi-Pumping

Autorzy: Johnsen, Carl-Johannes; De Matteis, Tiziano; Ben-Nun, Tal; Licht, Johannes de Fine; Hoefler, Torsten
Opublikowane w: Proceedings of the 41st IEEE/ACM International Conference on Computer-Aided Design, Numer 2, 2022
Wydawca: ACM
DOI: 10.1145/3508352.3549374

An Emulation Layer for Dynamic Resources with MPI Sessions

Autorzy: Jan Fecht; Martin Schreiber; Martin Schulz; Howard Pritchard; Daniel J. Holmes
Opublikowane w: Lecture Notes in Computer Science, Numer 2, 2023, ISBN 9783031232190
Wydawca: Springer
DOI: 10.1007/978-3-031-23220-6_10

Artifact and instructions to generate experimental results for Euro-Par 2022 paper: OmpSs-2@Cluster: Distributed memory execution of nested OpenMP-style tasks

Autorzy: Aguilar Mena, Jimmy; Shaaban, Omar; Beltran, Vicenç; Carpenter, Paul; Ayguadé, Eduard; Labarta Mancho, Jesus
Opublikowane w: Lecture Notes in Computer Science, Numer 2, 2022
Wydawca: Springer
DOI: 10.6084/m9.figshare.19960721.v1

NPBench: A Benchmarking Suite for High-Performance NumPy

Autorzy: Alexandros Nikolaos Ziogas, Tal Ben-Nun, Timo Schneider, and Torsten Hoefler
Opublikowane w: 2021
Wydawca: ICS'21

OmpSs-2@Cluster: Distributed memory execution of nested OpenMP-style tasks.

Autorzy: J. Aguilar Mena, O. Shaaban, V. Beltran, P. Carpenter, E. Ayguade, and J. Labarta
Opublikowane w: Proceedings of Euro-Par 2022, 2022
Wydawca: Springer
DOI: 10.1007/978-3-031-12597-3_20

Towards Dynamic Resource Management with MPI Sessions and PMIx

Autorzy: Huber, Dominik; Streubel, Maximilian; Comprés, Isaías; Schulz, Martin; Schreiber, Martin; Pritchard, Howard
Opublikowane w: uroMPI/USA '22: Proceedings of the 29th European MPI Users' Group Meeting, Numer 2, 2022
Wydawca: ACM
DOI: 10.1145/3555819.3555856

A Data-Centric Optimization Framework for Machine Learning

Autorzy: Oliver Rausch; Tal Ben-Nun; Nikoli Dryden; Andrei Ivanov; Shigang Li; Torsten Hoefler
Opublikowane w: ICS '22: Proceedings of the 36th ACM International Conference on Supercomputing, 2022
Wydawca: Association for Computing Machinery
DOI: 10.48550/arxiv.2110.10802

Productive Performance Engineering for Weather and Climate Modeling with Python

Autorzy: T. Ben-Nun, L. Groner, F. Deconinck, T. Wicky, E. Davis, J. Dahm, O. Elbert, R. George, J. McGibbon, L. Trümper, E. Wu, O. Fuhrer, T. Schulthess, T. Hoefler
Opublikowane w: SC'22, 2022
Wydawca: -

Exploring the impact of node failures on the resource allocation for parallel jobs

Autorzy: Ioannis Vardas, Manolis Ploumidis, Manolis Marazakis
Opublikowane w: Proceedings of the 14th Resilience Workshop, held in conjunction with Euro-Par, 2021
Wydawca: JuSER

Building Blocks for Network-Accelerated Distributed File Systems

Autorzy: Salvatore Di Girolamo, Daniele De Sensi, Konstantin Taranov, Milos Malesevic, Maciej Besta, Timo Schneider, Severin Kistler, Torsten Hoefler
Opublikowane w: SC'22, 2022
Wydawca: SC'22
DOI: 10.48550/arxiv.2206.10007

Impact of Cache Coherence on the Performance of Shared-Memory based MPI Primitives: A Case Study for Broadcast on Intel Xeon Scalable Processors - Computational Artifacts

Autorzy: Katevenis, George; Ploumidis, Manolis; Marazakis, Manolis
Opublikowane w: 52nd International Conference on Parallel Processing (ICPP), Numer 2, 2023
Wydawca: ACM
DOI: 10.5281/zenodo.8074488

Accelerating Brain Simulations with the Fast Multipole Method

Autorzy: H. Nöttgen, F. Czappa, and F. Wolf
Opublikowane w: Proceedings of Euro-Par 2022, 2022
Wydawca: Springer
DOI: 10.1007/978-3-031-12597-3_24

A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.

Autorzy: Martin Karp, Artur Podobas, Tobias Kenter, Niclas Jansson, Christian Plessl, Philipp Schlatter, and Stefano Markidis
Opublikowane w: HPCAsia2022, 2022
Wydawca: ACM
DOI: 10.1145/3492805.3492808

Maximum Flows in Parametric Graph Templates

Autorzy: Tal Ben-Nun; Lukas Gianinazzi; Torsten Hoefler; Yishai Oltchik
Opublikowane w: Lecture Notes in Computer Science, Numer vol 13898, 2023, Strona(/y) 97-111
Wydawca: Springer
DOI: 10.1007/978-3-031-30448-4_8

Boosting Performance Optimization with Interactive Data Movement Visualization

Autorzy: Philipp Schaad, Tal Ben-Nun, Torsten Hoefler
Opublikowane w: 2022
Wydawca: SC'22
DOI: 10.48550/arxiv.2207.07433

Breaking Down the Parallel Performance of GROMACS, a High-Performance Molecular Dynamics Software

Autorzy: Andersson, Måns I.; Murugan, N. Arul; Podobas, Artur; Markidis, Stefano
Opublikowane w: PPAM22, Numer Lecture Notes in Computer Science, vol 13826, 2023, Strona(/y) 333–345, ISBN 978-3-031-30442-2
Wydawca: Springer
DOI: 10.48550/arxiv.2208.13658

Lifting C semantics for dataflow optimization

Autorzy: Calotoiu, Alexandru; Ben-Nun, Tal; Kwasniewski, Grzegorz; Licht, Johannes de Fine; Schneider, Timo; Schaad, Philipp; Hoefler, Torsten
Opublikowane w: ICS '22: Proceedings of the 36th ACM International Conference on Supercomputing, 2022
Wydawca: Association for Computing Machinery
DOI: 10.1145/3524059.3532389

ecoHMEM: Improving Object Placement Methodology for Hybrid Memory Systems in HPC

Autorzy: Jordà Peroliu, Marc; Rai, Siddharth; Ayguadé Parra, Eduard; Labarta Mancho, Jesús José; Peña Monferrer, Antonio José
Opublikowane w: Crossref, Numer 18, 2022
Wydawca: IEEE
DOI: 10.1109/cluster51413.2022.00040

PROGRAML: A Graph-based Program Representation for Data Flow Analysis and Compiler Optimizations

Autorzy: Chris Cummins and Zacharias V. Fisches and Tal Ben-Nun and Torsten Hoefler and Michael O’Boyle and Hugh Leather
Opublikowane w: ICML'21, 2022
Wydawca: -

Combining Dynamic Concurrency Throttling with Voltage and Frequency Scaling on Task-based Programming Models

Autorzy: Antoni Navarro Muñoz; Arthur F. Lorenzon; Eduard Ayguadé Parra; Vicenç Beltran Querol
Opublikowane w: ICPP, 2021
Wydawca: Association for Computing Machinery
DOI: 10.1145/3472456.3472471

Advanced synchronization techniques for task-based runtime systems.

Autorzy: D. Álvarez, K. Sala, M. Maroñas, A. Roca, V. Beltran
Opublikowane w: Proceedings of PPoPP 2021, 2021
Wydawca: ACM
DOI: 10.1145/3437801.3441601

FMI: Fast and Cheap Message Passing for Serverless Functions

Autorzy: Copik, Marcin; Böhringer, Roman; Calotoiu, Alexandru; Hoefler, Torsten
Opublikowane w: Proceedings of the 37th International Conference on Supercomputing, Numer 18, 2023
Wydawca: ACM
DOI: 10.1145/3577193.3593718

Deinsum: Practically I/O Optimal Multilinear Algebra

Autorzy: A. Nikolaos Ziogas, G. Kwasniewski, T. Ben-Nun, T. Schneider, T. Hoefler
Opublikowane w: 2022
Wydawca: SC'22
DOI: 10.48550/arxiv.2206.08301

a benchmarking suite for high-performance NumPy

Autorzy: Alexandros Nikolaos Ziogas; Tal Ben-Nun; Timo Schneider; Torsten Hoefler
Opublikowane w: Proceedings of the ISC 2021, 2021
Wydawca: Association for Computing Machinery
DOI: 10.1145/3447818.3460360

Influence of Network Performance Variability on Application Scalability

Autorzy: Daniele De Sensi; Tiziano De Matteis; Konstantin Taranov; Salvatore Di Girolamo; Tobias Rahn; Torsten Hoefler
Opublikowane w: Proceedings of the ACM on Measurement and Analysis of Computing Systems, 6 (3), Numer 2, 2022
Wydawca: ACM
DOI: 10.1145/3570609

A framework for hierarchical single-copy MPI collectives on multicore nodes

Autorzy: G. Katevenis-Bitzos, M. Ploumidis, and M. Marazakis
Opublikowane w: IEEE Cluster 2022, Numer Presented at conference, 2022
Wydawca: IEEE

User-guided Page Merging for Memory Deduplication in Serverless Systems

Autorzy: Qiu, Wei; Copik, Marcin; Wang, Yun; Calotoiu, Alexandru; Hoefler, Torsten
Opublikowane w: 2023 IEEE International Conference on Big Data (Big Data), Numer 18, 2023
Wydawca: IEEE
DOI: 10.1109/bigdata59044.2023.10386487

Classification of Solar Flares using Data Analysis and Clustering of Active Regions

Autorzy: Hanne Baeke; Jorge Amaya; Giovanni Lapenta
Opublikowane w: Crossref, Numer 1, 2023
Wydawca: ESS Open Archive
DOI: 10.22541/essoar.167336864.46114556/v1

Processing in Memory: The Tipping Point

Autorzy: Petar Radojković, Paul Carpenter, Pouya Esmaili-Dokht, Rémy Cimadomo, Henri-Pierre Charles, Abu Sebastian, Paolo Amato
Opublikowane w: ETP4HPC White Paper, 2021
Wydawca: ETP4HPC
DOI: 10.5281/zenodo.4767489

FTIO: Detecting I/O Periodicity Using Frequency Techniques

Autorzy: Tarraf, Ahmad; Bandet, Alexis; Zanon Boito, Francieli; Pallez, Guillaume; Wolf, Felix
Opublikowane w: https://inria.hal.science/hal-04382142, Numer 2, 2023
Wydawca: arxiv
DOI: 10.48550/arxiv.2306.08601

Modular Supercomputing Architecture

Autorzy: Suarez, Estela; Eicker, Norbert; Moschny, Thomas; Pickartz, Simon; Clauss, Carsten; Plugaru, Valentin; Herten, Andreas; Michielsen, Kristel; Lippert, Thomas
Opublikowane w: ETP4HPC White Papers, 2022
Wydawca: ETP4HPC
DOI: 10.5281/zenodo.6508394

Heterogeneous High Performance Computing

Autorzy: P. Carpenter, U.-U. Haus, E. Laure, S. Narasimhamurthy, E. Suarez
Opublikowane w: ETP4HPC White Paper, 2022
Wydawca: ETP4HPC
DOI: 10.5281/zenodo.6090425

Task-Based Performance Portability in HPC

Autorzy: Olivier Aumage, Paul Carpenter, Siegfried Benkner
Opublikowane w: ETP4HPC White Paper, 2021
Wydawca: ETP4HPC

HPC for Urgent Decision-Making

Autorzy: M. Marazakis, M.Duranton, D. Pleiter, G. Taffoni, and H.C. Hoppe
Opublikowane w: ETP4HPC White Paper, 2022
Wydawca: ETP4HPC
DOI: 10.5281/zenodo.6107362

Critical Analysis of the Modular Supercomputing Architecture

Autorzy: E. Suarez, N. Eicker, Th.Moschny, Th. Lippert
Opublikowane w: Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project, 2021
Wydawca: FZJ Zentralbibliothek Verlag

An OpenMP free agent threads implementation

Autorzy: Lopez, Victor; Criado, Joel; Peñacoba, Raúl; Ferrer, Roger; Teruel, Xavier; Garcia-Gasulla, Marta
Opublikowane w: Lecture Notes in Computer Science - OpenMP: Enabling Massive Node-Level Parallelism, 2021
Wydawca: Springer
DOI: 10.1007/978-3-030-85262-7_15

Best practices guide

Autorzy: A. Kreuzer, J. Kreutz, B. Steinbusch
Opublikowane w: Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project, 2021
Wydawca: FZJ Zentralbibliothek Verlag

Space weather with DLMOS, xPic and GMM

Autorzy: J.Amaya
Opublikowane w: Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project, 2021
Wydawca: FZJ Zentralbibliothek Verlag

The DEEP-EST project

Autorzy: E. Suarez, A.Kreuzer, N. Eicker, Th. Lippert
Opublikowane w: Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project, 2021
Wydawca: FZJ Zentralbibliothek Verlag

Simulating Structural Plasticity of the Brain more Scalable than Expected

Autorzy: F. Czappa, A. Geiß, F. Wolf
Opublikowane w: Journal of Parallel and Distributed Computing, Numer 07437315, 2022, ISSN 0743-7315
Wydawca: Academic Press
DOI: 10.1016/j.jpdc.2022.09.001

Mitigating the NUMA Effect on Task-Based Runtime Systems

Autorzy: M. Maroñas, A. Navarro, E. Ayguadé and V. Beltran
Opublikowane w: The Journal of Supercomputing, Numer 4, 2023, ISSN 0920-8542
Wydawca: Kluwer Academic Publishers
DOI: 10.1007/s11227-023-05164-9

Operational Data Analytics in practice: Experiences from design to deployment in production HPC environments

Autorzy: Alessio Netti, Michael Ott, Carla Guillen, Daniele Tafani, Martin Schulz
Opublikowane w: Parallel Computing (ParCo), Numer 01678191, 2022, ISSN 0167-8191
Wydawca: Elsevier BV
DOI: 10.1016/j.parco.2022.102950

Towards leveraging collective performance with the support of MPI 4.0 features in MPC

Autorzy: S. Bouhrour, T. Pepin, J. Jaeger
Opublikowane w: Journal on Parallel Computing (ParCo), Numer Volume 109, March 2022, 102860, 2022, ISSN 0167-8191
Wydawca: Elsevier BV
DOI: 10.1016/j.parco.2021.102860

Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project

Autorzy: A. Kreuzer, E. Suarez, N. Eicker, Th. Lippert
Opublikowane w: Porting applications to a Modular Supercomputer - Experiences from the DEEP-EST project, 2021
Wydawca: FZJ Zentralbibliothek Verlag

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