Advanced XFEL and Synchrotron based Probes of Protein Structure and Dynamics

Informacje na temat projektu

X-probe

Identyfikator umowy o grant: 637295

DOI

10.3030/637295

Projekt został zamknięty

Data podpisania przez KE 27 Października 2014

Data rozpoczęcia 1 Stycznia 2015

Data zakończenia 31 Grudnia 2018

Finansowanie w ramach

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Koszt całkowity

€ 2 331 284,76

Wkład UE

€ 2 331 284,76

Koordynowany przez

UNIVERSITA DEGLI STUDI DI ROMA LA SAPIENZA
Italy

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (8)

Micro crystals of light sensitive proteins

Growth of micro-crystals of light sensitive proteins suitable for serial femtosecond crystallography studies at X-FELs.

Publish novel structural insights

Frontier studies on time-resolved diffraction and WAXS studies of light-sensitive proteins at XFELS

Publish time-resolved diffraction/WAXS

Papers reporting results on protein structural dynamics

Short pulsed facility

Commissioning of a short-pulsed X-ray facility at MAXIV in Lund

Mid-term Dissemination and exploitation plan

Update a shared plan for dissemination and exploitation of results

Final Dissemination and exploitation plan

A shared plan for dissemination and exploitation of results

Crystallization of light sensitive proteins

Crystallization of large crystals of light sensitive proteins suitable for Laue diffraction

WAXS software suite

Develop software to analyze time-resolved WAXS data incorporating molecular dynamics simulations

Websites, patent fillings, videos etc. (1)

Website

Information to the public and scientific and industrial community

Demonstrators, pilots, prototypes (2)

New tools for nano-crystallography

Develop and market new tools for sample handling and sample preparation for XFEL sources

Software packages for analysing X-ray diffraction

Develop software for processing, merging and scaling X-ray diffraction data from thousands of images

Other (1)

International Final Conference

International conference open to external participants on X-probe results

Publikacje

Peer reviewed articles (26)

Growing Protein Crystals with Distinct Dimensions Using Automated Crystallization Coupled with <em>In Situ</em> Dynamic Light Scattering

Autorzy: Daniela Baitan, Robin Schubert, Arne Meyer, Karsten Dierks, Markus Perbandt, Christian Betzel
Opublikowane w: Journal of Visualized Experiments, Numer 138, 2018, ISSN 1940-087X
Wydawca: MYJoVE Corporation
DOI: 10.3791/57070

Structural basis for selective inhibition of antibacterial target MraY, a membrane-bound enzyme involved in peptidoglycan synthesis

Autorzy: Jenny Hering, Elin Dunevall, Margareta Ek, Gisela Brändén
Opublikowane w: Drug Discovery Today, Numer 23/7, 2018, Strona(/y) 1426-1435, ISSN 1359-6446
Wydawca: Elsevier BV
DOI: 10.1016/j.drudis.2018.05.020

Engineered ferritin for lanthanide binding

Autorzy: Lorenzo Calisti, Matilde Cardoso Trabuco, Alberto Boffi, Claudia Testi, Linda Celeste Montemiglio, Amédée des Georges, Irene Benni, Andrea Ilari, Bartłomiej Taciak, Maciej Białasek, Tomasz Rygiel, Magdalena Król, Paola Baiocco, Alessandra Bonamore
Opublikowane w: PLOS ONE, Numer 13/8, 2018, Strona(/y) e0201859, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0201859

Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser

Autorzy: Przemyslaw Nogly, Tobias Weinert, Daniel James, Sergio Carbajo, Dmitry Ozerov, Antonia Furrer, Dardan Gashi, Veniamin Borin, Petr Skopintsev, Kathrin Jaeger, Karol Nass, Petra Båth, Robert Bosman, Jason Koglin, Matthew Seaberg, Thomas Lane, Demet Kekilli, Steffen Brünle, Tomoyuki Tanaka, Wenting Wu, Christopher Milne, Thomas White, Anton Barty, Uwe Weierstall, Valerie Panneels, Eriko Nango, So I
Opublikowane w: Science, 2018, Strona(/y) eaat0094, ISSN 0036-8075
Wydawca: American Association for the Advancement of Science
DOI: 10.1126/science.aat0094

FemtoMAX – an X-ray beamline for structural dynamics at the short-pulse facility of MAX IV

Autorzy: Henrik Enquist, Andrius Jurgilaitis, Amelie Jarnac, Åsa U. J. Bengtsson, Matthias Burza, Francesca Curbis, Christian Disch, J. Carl Ekström, Maher Harb, Lennart Isaksson, Marija Kotur, David Kroon, Filip Lindau, Erik Mansten, Jesper Nygaard, Anna I. H. Persson, Van Thai Pham, Michael Rissi, Sara Thorin, Chien-Ming Tu, Erik Wallén, Xiaocui Wang, Sverker Werin, Jörgen Larsson
Opublikowane w: Journal of Synchrotron Radiation, Numer 25/2, 2018, Strona(/y) 570-579, ISSN 1600-5775
Wydawca: Wiley-Blackwell on behalf of the International Union of Crystallography
DOI: 10.1107/S1600577517017660

Communication: Demonstration of a 20 ps X-ray switch based on a photoacoustic transducer

Autorzy: A. Jarnac, Xiaocui Wang, Å. U. J. Bengtsson, J. C. Ekström, H. Enquist, A. Jurgilaitis, D. Kroon, A. I. H. Persson, V.-T. Pham, C. M. Tu, J. Larsson
Opublikowane w: Structural Dynamics, Numer 4/5, 2017, Strona(/y) 051102, ISSN 2329-7778
Wydawca: AIP publishing
DOI: 10.1063/1.4993730

Substrate-induced conformational change in cytochrome P450 OleP

Autorzy: Giacomo Parisi, Linda Celeste Montemiglio, Alessandro Giuffrè, Alberto Macone, Antonella Scaglione, Gabriele Cerutti, Cécile Exertier, Carmelinda Savino, Beatrice Vallone
Opublikowane w: The FASEB Journal, Numer 33/2, 2019, Strona(/y) 1787-1800, ISSN 0892-6638
Wydawca: Federation of American Societies for Experimental Biology
DOI: 10.1096/fj.201800450RR

Probing Transient Photoinduced Charge Transfer in Prussian Blue Analogues with Time-Resolved XANES and Optical Spectroscopy

Autorzy: Serhane Zerdane, Marco Cammarata, Lodovico Balducci, Roman Bertoni, Laure Catala, Sandra Mazerat, Talal Mallah, Martin N. Pedersen, Michael Wulff, Kosuke Nakagawa, Hiroko Tokoro, Shin-ichi Ohkoshi, Eric Collet
Opublikowane w: European Journal of Inorganic Chemistry, Numer 2018/3-4, 2018, Strona(/y) 272-277, ISSN 1434-1948
Wydawca: John Wiley & Sons Ltd.
DOI: 10.1002/ejic.201700657

Dynamic multiple-scattering treatment of X-ray absorption: Parameterization of a new molecular dynamics force field for myoglobin

Autorzy: Giovanni Chillemi, Massimiliano Anselmi, Nico Sanna, Cristiano Padrin, Lodovico Balducci, Marco Cammarata, Elisabetta Pace, Majed Chergui, Maurizio Benfatto
Opublikowane w: Structural Dynamics, Numer 5/5, 2018, Strona(/y) 054101, ISSN 2329-7778
Wydawca: American Crystallographic Association, Inc.
DOI: 10.1063/1.5031806

Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature

Autorzy: Rebecka Andersson, Cecilia Safari, Robert Dods, Eriko Nango, Rie Tanaka, Ayumi Yamashita, Takanori Nakane, Kensuke Tono, Yasumasa Joti, Petra Båth, Elin Dunevall, Robert Bosman, Osamu Nureki, So Iwata, Richard Neutze, Gisela Brändén
Opublikowane w: Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-017-04817-z

Initial metal–metal bond breakage detected by fs X-ray scattering in the photolysis of Ru 3 (CO) 12 in cyclohexane at 400 nm

Autorzy: Q. Y. Kong, M. G. Laursen, K. Haldrup, K. S. Kjær, D. Khakhulin, E. Biasin, T. B. van Driel, M. Wulff, V. Kabanova, R. Vuilleumier, S. Bratos, M. M. Nielsen, K. J. Gaffney, T. C. Weng, M. H. J. Koch
Opublikowane w: Photochemical & Photobiological Sciences, Numer 18/2, 2019, Strona(/y) 319-327, ISSN 1474-905X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c8pp00420j

Megahertz serial crystallography

Autorzy: Max O. Wiedorn, Dominik Oberthür, Richard Bean, Robin Schubert, Nadine Werner, Brian Abbey, Martin Aepfelbacher, Luigi Adriano, Aschkan Allahgholi, Nasser Al-Qudami, Jakob Andreasson, Steve Aplin, Salah Awel, Kartik Ayyer, Saša Bajt, Imrich Barák, Sadia Bari, Johan Bielecki, Sabine Botha, Djelloul Boukhelef, Wolfgang Brehm, Sandor Brockhauser, Igor Cheviakov, Matthew A. Coleman, Francisco Cruz-
Opublikowane w: Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-06156-7

Double-flow focused liquid injector for efficient serial femtosecond crystallography

Autorzy: Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Sc
Opublikowane w: Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/srep44628

Pink-beam serial crystallography

Autorzy: A. Meents, M. O. Wiedorn, V. Srajer, R. Henning, I. Sarrou, J. Bergtholdt, M. Barthelmess, P. Y. A. Reinke, D. Dierksmeyer, A. Tolstikova, S. Schaible, M. Messerschmidt, C. M. Ogata, D. J. Kissick, M. H. Taft, D. J. Manstein, J. Lieske, D. Oberthuer, R. F. Fischetti, H. N. Chapman
Opublikowane w: Nature Communications, Numer 8/1, 2017, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-017-01417-3

Recent developments in CrystFEL

Autorzy: Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, Alexandra Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Opublikowane w: Journal of Applied Crystallography, Numer 49/2, 2016, Strona(/y) 680-689, ISSN 1600-5767
Wydawca: IUCr
DOI: 10.1107/s1600576716004751

Excimer based fluorescent pyrene–ferritin conjugate for protein oligomerization studies and imaging in living cells

Autorzy: Irene Benni, Matilde Cardoso Trabuco, Enrico Di Stasio, Alessandro Arcovito, Alberto Boffi, Francesco Malatesta, Alessandra Bonamore, Simone De Panfilis, Valeria de Turris, Paola Baiocco
Opublikowane w: RSC Advances, Numer 8/23, 2018, Strona(/y) 12815-12822, ISSN 2046-2069
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c8ra00210j

Probing bulky ligand entry in engineered archaeal ferritins

Autorzy: Lorenzo Calisti, Irene Benni, Matilde Cardoso Trabuco, Paola Baiocco, Barbara Ruzicka, Alberto Boffi, Elisabetta Falvo, Francesco Malatesta, Alessandra Bonamore
Opublikowane w: Biochimica et Biophysica Acta (BBA) - General Subjects, Numer 1861/2, 2017, Strona(/y) 450-456, ISSN 0304-4165
Wydawca: Elsevier BV
DOI: 10.1016/j.bbagen.2016.10.007

Structural basis for selectivity and diversity in angiotensin II receptors

Autorzy: Haitao Zhang, Gye Won Han, Alexander Batyuk, Andrii Ishchenko, Kate L. White, Nilkanth Patel, Anastasiia Sadybekov, Beata Zamlynny, Michael T. Rudd, Kaspar Hollenstein, Alexandra Tolstikova, Thomas A. White, Mark S. Hunter, Uwe Weierstall, Wei Liu, Kerim Babaoglu, Eric L. Moore, Ryan D. Katz, Jennifer M. Shipman, Margarita Garcia-Calvo, Sujata Sharma, Payal Sheth, Stephen M. Soisson, Raymond C. St
Opublikowane w: Nature, Numer 544/7650, 2017, Strona(/y) 327-332, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/nature22035

Real-Time Observation of Protein Dense Liquid Cluster Evolution during Nucleation in Protein Crystallization

Autorzy: Robin Schubert, Arne Meyer, Daniela Baitan, Karsten Dierks, Markus Perbandt, Christian Betzel
Opublikowane w: Crystal Growth & Design, Numer 17/3, 2017, Strona(/y) 954-958, ISSN 1528-7483
Wydawca: American Chemical Society
DOI: 10.1021/acs.cgd.6b01826

Proximal and distal control for ligand binding in neuroglobin: role of the CD loop and evidence for His64 gating

Autorzy: Cécile Exertier, Lisa Milazzo, Ida Freda, Linda Celeste Montemiglio, Antonella Scaglione, Gabriele Cerutti, Giacomo Parisi, Massimiliano Anselmi, Giulietta Smulevich, Carmelinda Savino, Beatrice Vallone
Opublikowane w: Scientific Reports, Numer 9/1, 2019, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-019-41780-3

Humanized archaeal ferritin as a tool for cell targeted delivery

Autorzy: de Turris V., Cardoso Trabuco M., Peruzzi G., Boffi A., Testi C., Vallone B., Montemiglio L.C., des Georges A., Calisti L., Benni I., Bonamore A. and Baiocco P.
Opublikowane w: nanoscale, 2017, ISSN 2040-3364
Wydawca: Royal Society of Chemistry
DOI: 10.5281/zenodo.2527178

Probing bulky ligand entry in engineered archaeal ferritins

Autorzy: Calisti L., Benni I., Cardoso Trabuco M., Baiocco P., Ruzicka B., Boffi A., Falvo E., Malatesta F. and Bonamore A.
Opublikowane w: Biochim Biophys Acta, 2017, ISSN 0304-4165
Wydawca: Elsevier BV
DOI: 10.5281/zenodo.2528583

Studies of electron diffusion in photo-excited Ni using time-resolved X-ray diffraction

Autorzy: A. I. H. Persson, A. Jarnac, Xiaocui Wang, H. Enquist, A. Jurgilaitis, J. Larsson
Opublikowane w: Applied Physics Letters, Numer 109/20, 2016, Strona(/y) 203115, ISSN 0003-6951
Wydawca: American Institute of Physics
DOI: 10.1063/1.4967470

MraY–antibiotic complex reveals details of tunicamycin mode of action

Autorzy: Jonna K Hakulinen, Jenny Hering, Gisela Brändén, Hongming Chen, Arjan Snijder, Margareta Ek, Patrik Johansson
Opublikowane w: Nature Chemical Biology, Numer 13/3, 2017, Strona(/y) 265-267, ISSN 1552-4450
Wydawca: Nature Publishing Group
DOI: 10.1038/nchembio.2270

The Two-Photon Reversible Reaction of the Bistable Jumping Spider Rhodopsin-1

Autorzy: David Ehrenberg, Niranjan Varma, Xavier Deupi, Mitsumasa Koyanagi, Akihisa Terakita, Gebhard F.X. Schertler, Joachim Heberle, Elena Lesca
Opublikowane w: Biophysical Journal, Numer 116/7, 2019, Strona(/y) 1248-1258, ISSN 0006-3495
Wydawca: Biophysical Society
DOI: 10.1016/j.bpj.2019.02.025

Generation of a large compressive strain wave in graphite by ultrashort-pulse laser irradiation

Autorzy: Xiaocui Wang, A. Jarnac, J. C. Ekström, Å. U. J. Bengtsson, F. Dorchies, H. Enquist, A. Jurgilaitis, M. N. Pedersen, C.-M. Tu, M. Wulff, J. Larsson
Opublikowane w: Structural Dynamics, Numer 6/2, 2019, Strona(/y) 024501, ISSN 2329-7778
Wydawca: amarican crystallographic association
DOI: 10.1063/1.5089291