Mechanisms of alternative pre-mRNA splicing regulation in cancer and pluripotent cells

Publikacje

Autorzy: Tobias Hoffmann, Juan Valcárcel
Opublikowane w: Cell, Numer 179/7, 2019, Strona(/y) 1446-1447, ISSN 0092-8674
Wydawca: Cell Press
DOI: 10.1016/j.cell.2019.11.028

Empowering MYC carcinogenesis via RNA loops

Autorzy: Suzanne G. Mays, Juan Valcárcel
Opublikowane w: Molecular Cell, Numer 81/7, 2021, Strona(/y) 1365-1367, ISSN 1097-2765
Wydawca: Cell Press
DOI: 10.1016/j.molcel.2021.03.011

Mutations primarily alter the inclusion of alternatively spliced exons

Autorzy: Pablo Baeza-Centurion, Belén Miñana, Juan Valcárcel, Ben Lehner
Opublikowane w: eLife, Numer 9, 2020, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.59959

RNA-binding proteins in human genetic disease

Autorzy: Fátima Gebauer, Thomas Schwarzl, Juan Valcárcel, Matthias W. Hentze
Opublikowane w: Nature Reviews Genetics, Numer 22/3, 2021, Strona(/y) 185-198, ISSN 1471-0056
Wydawca: Nature Publishing Group
DOI: 10.1038/s41576-020-00302-y

Alternative splicing regulation of cell cycle genes by SPF45/SR140/CHERP complex controls cell proliferation

Autorzy: Elena Martin, Claudia Vivori, Malgorzata Rogalska, Jorge Herrero, Juan Valcarcel
Opublikowane w: RNA, 2021, Strona(/y) rna.078935.121, ISSN 1355-8382
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1261/rna.078935.121

Roles and mechanisms of alternative splicing in cancer — implications for care

Autorzy: Sophie C. Bonnal, Irene López-Oreja, Juan Valcárcel
Opublikowane w: Nature Reviews Clinical Oncology, Numer 17/8, 2020, Strona(/y) 457-474, ISSN 1759-4774
Wydawca: Nature Publishing Group
DOI: 10.1038/s41571-020-0350-x

The Spliceosome: The Ultimate RNA Chaperone and Sculptor

Autorzy: Panagiotis Papasaikas, Juan Valcárcel
Opublikowane w: Trends in Biochemical Sciences, Numer 41/1, 2016, Strona(/y) 33-45, ISSN 0968-0004
Wydawca: Elsevier BV
DOI: 10.1016/j.tibs.2015.11.003

The complete local genotype–phenotype landscape for the alternative splicing of a human exon

Autorzy: Philippe Julien, Belén Miñana, Pablo Baeza-Centurion, Juan Valcárcel, Ben Lehner
Opublikowane w: Nature Communications, Numer 7/1, 2016, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/ncomms11558

Structural basis for the recognition of spliceosomal SmN/B/B’ proteins by the RBM5 OCRE domain in splicing regulation

Autorzy: André Mourão, Sophie Bonnal, Komal Soni, Lisa Warner, Rémy Bordonné, Juan Valcárcel, Michael Sattler
Opublikowane w: eLife, Numer 5, 2016, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.14707

Tumor suppressor properties of the splicing regulatory factor RBM10

Autorzy: Jordi Hernández, Elias Bechara, Doerte Schlesinger, Javier Delgado, Luis Serrano, Juan Valcárcel
Opublikowane w: RNA Biology, Numer 13/4, 2015, Strona(/y) 466-472, ISSN 1547-6286
Wydawca: Landes Bioscience
DOI: 10.1080/15476286.2016.1144004

Systems analysis identifies melanoma-enriched pro-oncogenic networks controlled by the RNA binding protein CELF1

Autorzy: Metehan Cifdaloz, Lisa Osterloh, Osvaldo Graña, Erica Riveiro-Falkenbach, Pilar Ximénez-Embún, Javier Muñoz, Cristina Tejedo, Tonantzin G. Calvo, Panagiotis Karras, David Olmeda, Belén Miñana, Gonzalo Gómez-López, Estela Cañon, Eduardo Eyras, Haihong Guo, Ferdinand Kappes, Pablo L. Ortiz-Romero, Jose L. Rodríguez-Peralto, Diego Megías, Juan Valcárcel, María S. Soengas
Opublikowane w: Nature Communications, Numer 8/1, 2017, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-017-02353-y

Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12 Intron Splicing-Defective Zrsr1 Mutant Mice

Autorzy: Keiko Horiuchi, Serafín Perez-Cerezales, Panagiotis Papasaikas, Priscila Ramos-Ibeas, Angela Patricia López-Cardona, Ricardo Laguna-Barraza, Noelia Fonseca Balvís, Eva Pericuesta, Raul Fernández-González, Benjamín Planells, Alberto Viera, Jose Angel Suja, Pablo Juan Ross, Francisco Alén, Laura Orio, Fernando Rodriguez de Fonseca, Belén Pintado, Juan Valcárcel, Alfonso Gutiérrez-Adán
Opublikowane w: Cell Reports, Numer 23/1, 2018, Strona(/y) 143-155, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2018.03.028

Molecular basis of differential 3′ splice site sensitivity to anti-tumor drugs targeting U2 snRNP

Autorzy: Luisa Vigevani, André Gohr, Thomas Webb, Manuel Irimia, Juan Valcárcel
Opublikowane w: Nature Communications, Numer 8/1, 2017, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-017-02007-z

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

Autorzy: Endre Sebestyén, Babita Singh, Belén Miñana, Amadís Pagès, Francesca Mateo, Miguel Angel Pujana, Juan Valcárcel, Eduardo Eyras
Opublikowane w: Genome Research, Numer 26/6, 2016, Strona(/y) 732-744, ISSN 1088-9051
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.199935.115

Sudemycin K: A Synthetic Antitumor Splicing Inhibitor Variant with Improved Activity and Versatile Chemistry

Autorzy: Kamil Makowski, Luisa Vigevani, Fernando Albericio, Juan Valcárcel, Mercedes Álvarez
Opublikowane w: ACS Chemical Biology, Numer 12/1, 2016, Strona(/y) 163-173, ISSN 1554-8929
Wydawca: American Chemical Society
DOI: 10.1021/acschembio.6b00562

Smu1 and RED are required for activation of spliceosomal B complexes assembled on short introns

Autorzy: Sandra Keiper, Panagiotis Papasaikas, Cindy L. Will, Juan Valcárcel, Cyrille Girard, Reinhard Lührmann
Opublikowane w: Nature Communications, Numer 10/1, 2019, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-019-11293-8

Site-Specific mRNA Cleavage for Selective and Quantitative Profiling of Alternative Splicing with Label-Free Optical Biosensors

Autorzy: Cesar S. Huertas, Sophie Bonnal, Maria Soler, Alfonso M. Escuela, Juan Valcárcel, Laura M. Lechuga
Opublikowane w: Analytical Chemistry, Numer 91/23, 2019, Strona(/y) 15138-15146, ISSN 0003-2700
Wydawca: American Chemical Society
DOI: 10.1021/acs.analchem.9b03898

Combinatorial Genetics Reveals a Scaling Law for the Effects of Mutations on Splicing

Autorzy: Pablo Baeza-Centurion, Belén Miñana, Jörn M. Schmiedel, Juan Valcárcel, Ben Lehner
Opublikowane w: Cell, Numer 176/3, 2019, Strona(/y) 549-563.e23, ISSN 0092-8674
Wydawca: Cell Press
DOI: 10.1016/j.cell.2018.12.010

Dynamics of alternative splicing during somatic cell reprogramming reveals functions for RNA-binding proteins CPSF3, hnRNP UL1, and TIA1

Autorzy: Claudia Vivori, Panagiotis Papasaikas, Ralph Stadhouders, Bruno Di Stefano, Anna Ribó Rubio, Clara Berenguer Balaguer, Serena Generoso, Anna Mallol, José Luis Sardina, Bernhard Payer, Thomas Graf, Juan Valcárcel
Opublikowane w: Genome Biology, Numer 22/1, 2021, Strona(/y) 171, ISSN 1474-760X
Wydawca: Springer Nature
DOI: 10.1186/s13059-021-02372-5

A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons

Autorzy: Antonio Torres-Méndez, Sophie Bonnal, Yamile Marquez, Jonathan Roth, Marta Iglesias, Jon Permanyer, Isabel Almudí, Dave O’Hanlon, Tanit Guitart, Matthias Soller, Anne-Claude Gingras, Fátima Gebauer, Fabian Rentzsch, Benjamin J. Blencowe, Juan Valcárcel, Manuel Irimia
Opublikowane w: Nature Ecology & Evolution, Numer 3/4, 2019, Strona(/y) 691-701, ISSN 2397-334X
Wydawca: Nature Publishers
DOI: 10.1038/s41559-019-0813-6

Functional Network Analysis Reveals the Relevance of SKIIP in the Regulation of Alternative Splicing by p38 SAPK

Autorzy: Caterina Carbonell, Arnau Ulsamer, Claudia Vivori, Panagiotis Papasaikas, René Böttcher, Manel Joaquin, Belén Miñana, Juan Ramón Tejedor, Eulàlia de Nadal, Juan Valcárcel, Francesc Posas
Opublikowane w: Cell Reports, Numer 27/3, 2019, Strona(/y) 847-859.e6, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2019.03.060

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