Unfolding the Mechanism of Chromosome Cohesion and Condensation using Single-Molecule Biophysical Approaches

Publikacje

Double-stranded RNA bending by AU-tract sequences

Autorzy: Alberto Marin-Gonzalez, Clara Aicart-Ramos, Mikel Marin-Baquero, Alejandro Martín-González, Maarit Suomalainen, Abhilash Kannan, J G Vilhena, Urs F Greber, Fernando Moreno-Herrero, Rubén Pérez
Opublikowane w: Nucleic Acids Research, Numer 48(22), 2020, Strona(/y) 12917–12928, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkaa1128

Functional characterization of the different oligomeric forms of human surfactant protein SP-D

Autorzy: Raquel Arroyo, Mercedes Echaide, Fernando Moreno-Herrero, Jesus Perez-Gil, Paul S. Kingma
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Numer 1868/8, 2020, Strona(/y) 140436, ISSN 1570-9639
Wydawca: Elsevier BV
DOI: 10.1016/j.bbapap.2020.140436

Characterizing microfluidic approaches for a fast and efficient reagent exchange in single-molecule studies

Autorzy: Julene Madariaga-Marcos, Roberta Corti, Silvia Hormeño, Fernando Moreno-Herrero
Opublikowane w: Scientific Reports, Numer 10/1, 2020, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-020-74523-w

Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Autorzy: Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon
Opublikowane w: Molecular Cell, Numer 80, 2020, Strona(/y) 1-16, ISSN 1097-2765
Wydawca: Cell Press
DOI: 10.1016/j.molcel.2020.11.012

A molecular view of DNA flexibility

Autorzy: Alberto Marin-Gonzalez, J. G. Vilhena; Ruben Perez, Fernando Moreno-Herrero
Opublikowane w: Quarterly Reviews of Biophysics, Numer 54, e8, 2021, Strona(/y) 1-20, ISSN 0033-5835
Wydawca: Cambridge University Press
DOI: 10.1017/s0033583521000068

CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS

Autorzy: Francisco de Asis Balaguer, Clara Aicart-Ramos, Gemma LM Fisher, Sara de Bragança, Eva M Martin-Cuevas, Cesar L Pastrana, Mark Simon Dillingham, Fernando Moreno-Herrero
Opublikowane w: eLife, Numer 1, 2021, Strona(/y) 1-28, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.67554

Dynamics of DNA nicking and unwinding by the RepC–PcrA complex

Autorzy: Carolina Carrasco, Cesar L Pastrana, Clara Aicart-Ramos, Sanford H Leuba, Saleem A Khan, Fernando Moreno-Herrero
Opublikowane w: Nucleic Acids Research, Numer 48/4, 2020, Strona(/y) 2013-2025, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkz1200

Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics

Autorzy: Alberto Marin-Gonzalez, J. G. Vilhena, Ruben Perez, Fernando Moreno-Herrero
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 114/27, 2017, Strona(/y) 7049-7054, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1705642114

The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere

Autorzy: Gemma LM Fisher, César L Pastrana, Victoria A Higman, Alan Koh, James A Taylor, Annika Butterer, Timothy Craggs, Frank Sobott, Heath Murray, Matthew P Crump, Fernando Moreno-Herrero, Mark S Dillingham
Opublikowane w: eLife, Numer 6, 2017, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/eLife.28086

Force determination in lateral magnetic tweezers combined with TIRF microscopy

Autorzy: J. Madariaga-Marcos, S. Hormeño, C. L. Pastrana, G. L. M. Fisher, M. S. Dillingham, F. Moreno-Herrero
Opublikowane w: Nanoscale, Numer 10/9, 2018, Strona(/y) 4579-4590, ISSN 2040-3364
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c7nr07344e

Supramolecular Assembly of Human Pulmonary Surfactant Protein SP-D

Autorzy: R. Arroyo, A. Martín-González, M. Echaide, A. Jain, W.H. Brondyk, J. Rosenbaum, F. Moreno-Herrero, J. Pérez-Gil
Opublikowane w: Journal of Molecular Biology, Numer 430/10, 2018, Strona(/y) 1495-1509, ISSN 0022-2836
Wydawca: Academic Press
DOI: 10.1016/j.jmb.2018.03.027

The TubR–centromere complex adopts a double-ring segrosome structure in Type III partition systems

Autorzy: Bárbara Martín-García, Alejandro Martín-González, Carolina Carrasco, Ana M Hernández-Arriaga, Rubén Ruíz-Quero, Ramón Díaz-Orejas, Clara Aicart-Ramos, Fernando Moreno-Herrero, María A Oliva
Opublikowane w: Nucleic Acids Research, Numer 46/11, 2018, Strona(/y) 5704-5716, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gky370

CtIP forms a tetrameric dumbbell-shaped particle which bridges complex DNA end structures for double-strand break repair

Autorzy: Oliver J Wilkinson, Alejandro Martín-González, Haejoo Kang, Sarah J Northall, Dale B Wigley, Fernando Moreno-Herrero, Mark Simon Dillingham
Opublikowane w: eLife, Numer 8, 2019, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.42129

ParB dynamics and the critical role of the CTD in DNA condensation unveiled by combined force-fluorescence measurements

Autorzy: Julene Madariaga-Marcos, Cesar L Pastrana, Gemma LM Fisher, Mark Simon Dillingham, Fernando Moreno-Herrero
Opublikowane w: eLife, Numer 8, 2019, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.43812

DNA Crookedness Regulates DNA Mechanical Properties at Short Length Scales

Autorzy: Alberto Marin-Gonzalez, J. G. Vilhena, Fernando Moreno-Herrero, Ruben Perez
Opublikowane w: Physical Review Letters, Numer 122/4, 2019, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/physrevlett.122.048102

Bulk and single-molecule analysis of a bacterial DNA2-like helicase–nuclease reveals a single-stranded DNA looping motor

Autorzy: Oliver J Wilkinson, Carolina Carrasco, Clara Aicart-Ramos, Fernando Moreno-Herrero, Mark S Dillingham
Opublikowane w: Nucleic Acids Research, Numer 48/14, 2020, Strona(/y) 7991-8005, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkaa562

Understanding the paradoxical mechanical response of in-phase A-tracts at different force regimes

Autorzy: Alberto Marin-Gonzalez, Cesar L Pastrana, Rebeca Bocanegra, Alejandro Martín-González, J G Vilhena, Rubén Pérez, Borja Ibarra, Clara Aicart-Ramos, Fernando Moreno-Herrero
Opublikowane w: Nucleic Acids Research, Numer 48/9, 2020, Strona(/y) 5024-5036, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkaa225

Human HELB is a processive motor protein which catalyses RPA clearance from single-stranded DNA

Autorzy: S Hormeno, OJ Wilkinson, C Aicart-Ramos, S Kuppa, E Antony, MS Dillingham, F Moreno-Herrero
Opublikowane w: bioRxiv, 2021, ISSN 2692-8205
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.05.27.445972

Long Noncoding RNA NIHCOLE Promotes Ligation Efficiency of DNA Double-Strand Breaks in Hepatocellular Carcinoma

Autorzy: Juan P. Unfried, Mikel Marín-Baquero, Ángel Rivera-Calzada, Nerea Razquin, Eva M. Martín-Cuevas, Sara de Bragança, Clara Aicart-Ramos, Christopher McCoy, Laura Prats-Mari, Raquel Arribas-Bosacoma, Linda Lee, Stefano Caruso, Jessica Zucman-Rossi, Bruno Sangro, Gareth Williams, Fernando Moreno-Herrero, Oscar Llorca, Susan P. Lees-Miller and Puri Fortes
Opublikowane w: Cancer Research, Numer 81(19), 2021, Strona(/y) 4910-4925, ISSN 0008-5472
Wydawca: American Association for Cancer Research
DOI: 10.1158/0008-5472.can-21-0463

Sequence-dependent mechanical properties of double-stranded RNA

Autorzy: Alberto Marin-Gonzalez, J. G. Vilhena, Fernando Moreno-Herrero, Ruben Perez
Opublikowane w: Nanoscale, Numer 11/44, 2019, Strona(/y) 21471-21478, ISSN 2040-3364
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c9nr07516j

High-Resolution Atomic Force Microscopy Imaging of Nucleic Acids

Autorzy: Pablo Ares, Julio Gomez-Herrero, Fernando Moreno-Herrero
Opublikowane w: Nanoscale Imaging, Numer 1814, 2018, Strona(/y) 3-17, ISBN 978-1-4939-8590-6
Wydawca: Springer New York
DOI: 10.1007/978-1-4939-8591-3_1

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