Understanding microbiomes of the ruminant holobiont

Informacje na temat projektu

HoloRuminant

Identyfikator umowy o grant: 101000213

DOI

10.3030/101000213

Data podpisania przez KE 6 Maja 2021

Data rozpoczęcia 1 Października 2021

Data zakończenia 30 Września 2026

Finansowanie w ramach

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Koszt całkowity

€ 10 895 021,00

Wkład UE

€ 9 724 763,75

Koordynowany przez

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Open Research Data Pilot (2)

HoloRuminant Data Management Plan (update at M18)

HoloRuminant Data Management Plan update at M18

HoloRuminant Data Management Plan

Documents, reports (1)

Communication toolkit and project identity

Publikacje

Peer reviewed articles (22)

Susceptibility of dairy cows to subacute ruminal acidosis is reflected in both prepartum and postpartum bacteria as well as odd- and branched-chain fatty acids in feces

Autorzy: Yang, H., Heirbaut, S., Jing, X. et al.
Opublikowane w: Journal of Animal Science and Biotechnology, 2022, ISSN 1674-9782
Wydawca: BioMed Central
DOI: 10.1186/s40104-022-00738-8

Public acceptance of microbiome management strategy in dairy calves: a European survey on colostrum, probiotic provision and prolonged cow-calf contact

Autorzy: A. Ait Sidhoum, A. Stygar, F. Bedoin, J.K. Niemi
Opublikowane w: animal, Numer 19, 2025, Strona(/y) 101380, ISSN 1751-7311
Wydawca: Cambridge University Press
DOI: 10.1016/j.animal.2024.101380

Protozoal populations drive system-wide variation in the rumen microbiome

Autorzy: Carl M. Kobel, Andy Leu, Arturo Vera-Ponce de León, Ove Øyås, Wanxin Lai, Ianina Altshuler, Live H. Hagen, Rasmus D. Wollenberg, Mads T. Søndergaard, Cassie R. Bakshani, William G. T. Willats, Laura Nicoll, Simon J. McIlroy, Torgeir R. Hvidsten, Oliver Schmidt, Chris Greening, Gene W. Tyson, Rainer Roehe, Velma T. E. Aho, Phillip B. Pope
Opublikowane w: Nature Communications, Numer 16, 2025, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-025-61302-2

Metabolic capabilities of key rumen microbiota drive methane emissions in cattle

Autorzy: Wanxin Lai, Antton Alberdi, Andy Leu, Arturo V. P. de Leon, Carl M. Kobel, Velma T. E. Aho, Rainer Roehe, Phil B. Pope, Torgeir R. Hvidsten
Opublikowane w: mSystems, Numer 10, 2025, ISSN 2379-5077
Wydawca: American Society for Microbiology
DOI: 10.1128/msystems.00601-25

A Comprehensive Review: Bovine Respiratory Disease, Current Insights into Epidemiology, Diagnostic Challenges, and Vaccination

Autorzy: Stephanie O’Donoghue, Sinéad M. Waters, Derek W. Morris, Bernadette Earley
Opublikowane w: Veterinary Sciences, Numer 12, 2025, Strona(/y) 778, ISSN 2306-7381
Wydawca: MDPI AG
DOI: 10.3390/vetsci12080778

Subacute ruminal acidosis phenotypes in periparturient dairy cows differ in ruminal and salivary bacteria and in the in vitro fermentative activity of their ruminal microbiota

Autorzy: H. Yang, S. Heirbaut, J. Jeyanathan, X.P. Jing, N. De Neve, L. Vandaele, V. Fievez
Opublikowane w: Journal of Dairy Science, 2022, ISSN 0022-0302
Wydawca: American Dairy Science Association
DOI: 10.3168/jds.2021-21115

Empowering bioinformatics communities with Nextflow and nf-core

Autorzy: Björn E. Langer, Andreia Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Krishna Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip A. Ewels, Sonia Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, Gisela Gabernet, Maxime U. Garcia, Gareth Gillard, Manu Kumar Gundappa, Cervin Guyomar, Christopher Hakkaart, Friederike Hanssen
Opublikowane w: Genome Biology, Numer 26, 2025, ISSN 1474-760X
Wydawca: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03673-9

Feed additives for methane mitigation: A guideline to uncover the mode of action of antimethanogenic feed additives for ruminants

Autorzy: Alejandro Belanche, André Bannink, Jan Dijkstra, Zoey Durmic, Florencia Garcia, Fernanda G. Santos, Sharon Huws, Jeyamalar Jeyanathan, Peter Lund, Roderick I. Mackie, Tim A. McAllister, Diego P. Morgavi, Stefan Muetzel, Dipti W. Pitta, David R. Yáñez-Ruiz, Emilio M. Ungerfeld
Opublikowane w: Journal of Dairy Science, Numer 108, 2025, Strona(/y) 375-394, ISSN 0022-0302
Wydawca: American Dairy Science Association
DOI: 10.3168/jds.2024-25046

Rumen microbiota associated with feed efficiency in beef cattle are highly influenced by diet composition

Autorzy: Abimael Ortiz-Chura, Karla Fabiola Corral-Jara, Jeremy Tournayre, Gonzalo Cantalapiedra-Hijar, Milka Popova, Diego P. Morgavi
Opublikowane w: Animal Nutrition, Numer 21, 2025, Strona(/y) 378-389, ISSN 2405-6545
Wydawca: Elsevier BV
DOI: 10.1016/j.aninu.2024.11.027

Response of Primary Mammary Epithelial Cells to Pathogen Challenge in Dairy Cows with Divergent Genomic Breeding Values for Udder Health

Autorzy: Terhi Iso-Touru, Daniel Fischer, Frank Panitz, Suvi Taponen, Zexi Cai, Goutam Sahana, Ilma Tapio, Johanna Vilkki
Opublikowane w: Genomics, Numer Volume 117, Numer 5, 2025, ISSN 0888-7543
Wydawca: Academic Press
DOI: 10.2139/ssrn.5277413

Can high-lipid concentrates offset the high enteric methane production caused by high-forage diets fed to lactating dairy cows?

Autorzy: N. Ayanfe, I. Tapio, S. Ahvenjärvi, M. Rinne, A. Sairanen, A.R. Bayat
Opublikowane w: Journal of Dairy Science, Numer 108, 2025, Strona(/y) 8350-8366, ISSN 0022-0302
Wydawca: American Dairy Science Association
DOI: 10.3168/jds.2024-26108

CompareM2 is a genomes-to-report pipeline for comparing microbial genomes

Autorzy: Carl M Kobel, Velma T E Aho, Ove Øyås, Niels Nørskov-Lauritsen, Ben J Woodcroft, Phillip B Pope
Opublikowane w: Bioinformatics, Numer 41, 2025, ISSN 1367-4803
Wydawca: Oxford University Press
DOI: 10.1093/bioinformatics/btaf517

Duration of dam contact had a long effect on calf rumen microbiota without affecting growth

Autorzy: Laurianne Voland, Abimael Ortiz-Chura, Jeremy Tournayre, Bruno Martin, Matthieu Bouchon, Alessandra Nicolao, Dominique Pomiès, Diego P. Morgavi, Milka Popova
Opublikowane w: Frontiers in Veterinary Science, Numer 12, 2025, ISSN 2297-1769
Wydawca: Frontiers Media SA
DOI: 10.3389/fvets.2025.1548892

Effects of feed additives in the diet of male dairy beef calves on physiological status and rumen microbial fermentation pre- and postweaning

Autorzy: E. Romera-Recio, E. Ramos-Morales, A. Belanche, M. Hassan, P. Romero, A. Gómez, I. Rivelli, N. Llanes, J. Torra, D.R. Yáñez-Ruiz
Opublikowane w: Animal Feed Science and Technology, Numer 321, 2025, Strona(/y) 116243, ISSN 0377-8401
Wydawca: Elsevier BV
DOI: 10.1016/j.anifeedsci.2025.116243

International Symposium on Ruminant Physiology: The role of rumen microbiome in the development of methane mitigation strategies for ruminant livestock

Autorzy: S.M. Waters, E. Roskam, P.E. Smith, D.A. Kenny, M. Popova, M. Eugène, D.P. Morgavi
Opublikowane w: Journal of Dairy Science, Numer 108, 2025, Strona(/y) 7591-7606, ISSN 0022-0302
Wydawca: American Dairy Science Association
DOI: 10.3168/jds.2024-25778

Genes and pathways revealed by whole transcriptome analysis of milk derived bovine mammary epithelial cells after Escherichia coli challenge

Autorzy: Terhi Iso-Touru, Frank Panitz, Daniel Fischer, Minna K. Kyläniemi, Suvi Taponen, Jonna Tabell, Anneli Virta, Johanna Vilkki
Opublikowane w: Veterinary Research, Numer 55, 2024, ISSN 1297-9716
Wydawca: Veterinary research
DOI: 10.1186/s13567-024-01269-y

Ruminant microbiome data are skewed and unFAIR, undermining their usefulness for sustainable production improvement

Autorzy: Abimael Ortiz-Chura, Milka Popova, Diego P. Morgavi
Opublikowane w: Animal Microbiome, Numer 6, 2024, ISSN 2524-4671
Wydawca: National Library of Medicine
DOI: 10.1186/s42523-024-00348-x

Health-associated changes of the fecal microbiota in dairy heifer calves during the pre-weaning period

Autorzy: Sabine Scully, Bernadette Earley, Paul E. Smith, Catherine McAloon, Sinéad M. Waters
Opublikowane w: Frontiers in Microbiology, Numer 15, 2024, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2024.1359611

Recent Advances in Enteric Methane Mitigation and the Long Road to Sustainable Ruminant Production

Autorzy: Simon Roques, Gonzalo Martinez-Fernandez, Yuliaxis Ramayo-Caldas, Milka Popova, Stuart Denman, Sarah J. Meale, Diego P. Morgavi
Opublikowane w: Annual Review of Animal Biosciences, Numer 12, 2024, Strona(/y) 321-343, ISSN 2165-8102
Wydawca: Annual Reviews Inc.
DOI: 10.1146/annurev-animal-021022-024931

Characterisation of the bacterial and archaeal microbiota in fresh colostrum collected from a single, spring-calving dairy herd

Autorzy: Sabine Scully, Bernadette Earley, Paul E. Smith, Matthew S. J. Finnie, Catherine McAloon, Frank Buckley, David A. Kenny, Sinéad M. Waters
Opublikowane w: PLOS One, Numer 20, 2025, Strona(/y) e0335718, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0335718

Co-occurring microbial guilds in pig fecal microbiota: key drivers and effects on host performance

Autorzy: Ioanna-Theoni Vourlaki, Raquel Rio-Lopez, Adrià Clavell-Sansalvador, Lino C. Ramírez-Ayala, Maria Ballester, Juan P. Sanchez, Miriam Piles, Raquel Quintanilla, Angela C. da Fonseca de Oliveira, Leandro Batista Costa, Antoni Dalmau, Yuliaxis Ramayo-Caldas
Opublikowane w: Genetics Selection Evolution, Numer 57, 2025, ISSN 1297-9686
Wydawca: Springer Science and Business Media LLC
DOI: 10.1186/s12711-025-00979-x

Integrating host and microbiome biology using holo-omics

Autorzy: Carl M. Kobel, Jenny Merkesvik, Idun Maria Tokvam Burgos, Wanxin Lai, Ove Øyås, Phillip B. Pope, Torgeir R. Hvidsten, Velma T. E. Aho
Opublikowane w: Molecular Omics, Numer 20, 2024, Strona(/y) 438-452, ISSN 2515-4184
Wydawca: Royal Society of Chemistry (RSC)
DOI: 10.1039/d4mo00017j