Wyniki projektu
CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.
Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .
Rezultaty
This deliverable presents the training plan implementation and the development of the related key output. It describes also the assessment of the training plan and lists the main results.
Report on achieved workshops (odnośnik otworzy się w nowym oknie)The report will describe the skills acquired by young researchers, scientists, and technical assistants from CBS and other biotech centers and institutes during the workshop 1, workshop 2 and workshop 3.
Data analysis training reports (odnośnik otworzy się w nowym oknie)A report on training activities and results will be held to focus on the achievement of important knowledge, skills, and abilities that are required for the efficient performance of CBS’ staff on understanding their NGS data and perform their first downstream analysis.
Data management plan (odnośnik otworzy się w nowym oknie)The data management plan (DMP) will describe the data expected to be generated during the course of the project, how data will be managed, described, analyzed, and stored, and the mechanisms that will be used at the end of the project to share and preserve data.
Communication and Dissemination Plan (odnośnik otworzy się w nowym oknie)The deliverable presents a description of the methodology that the NGS-4-ECOPROD partners shall apply for dissemination and communication activities. It is an action plan that details the respective communication and dissemination objectives and measures for achieving them.
Final report on dissemination and knowledge transfer generated within the project (odnośnik otworzy się w nowym oknie)This deliverable provides a summary of the different dissemination and Knowledge Transfer actions carried out along the project to make stakeholders aware of the main findings of the project and transfer the knowledge generated by its activities to the target users of this knowledge.
Technical training report (odnośnik otworzy się w nowym oknie)A report on training activities will be focused on the achievement of important knowledge, skills, and abilities that required for the performance of 7 CBS staff on practical handling of metagenomic, bacterial genomic, and fungal genomic using Illumina and Nanopore technologies.
Report on workshops 5, 6 and 7 (odnośnik otworzy się w nowym oknie)The report will describe how the workshops 5, 6 and 7 improved CBS networking, the capacity building of the CBS staff on project development and legal affairs and financial capacity building and innovation management, respectively.
Report on achieved Summer schools and workshop 4 (odnośnik otworzy się w nowym oknie)The first summer school program will allow participants to master the key in learning, understanding and performing the main step of the work flow of the 16S/18S/ITS rDNA: Checking required software; quality control with Fast QC; community analysis using 16S/18S/ITS reads, metagenomic assembly reads, functional annotation, taxonomic annotation, mapping reads and quantifying genes and exploriging the annotation.The second summer school program will allow participants to master the introduction to the concepts of de novo/resequencing assembly and annotation pipelines. The skill acquisition of the trained participants during the workshop will be the introduction to the concepts of de novo/resequencing assembly and annotation workflows. Particular attention will be giving to the quality control of the assembly, annotation and to the understanding how errors occur, (ii) Benchmarking several software’s/ algorithms for short and long reads correction, and (iii) Evolutionary dynamics and functional impact of the extrachromosomal elements
Gender strategy and Ethics (odnośnik otworzy się w nowym oknie)The gender action plan will include quotas, targets, activities, and design features to address gender-equality issues, and to facilitate women’s involvement, participation in, and tangible benefits from the project.This delivrable will describe also the actions done to ensure that all partners comply with ethical principles of research and innovation, and national legislations and regulations of the EU.
This deliverable described the construction and publishing of the project’s website (that will follow up on all the project’s activities and results) and the design and production of the related selected dissemination material.
Publikacje
Autorzy:
Fatma Benjeddou; Ines Mnif; Marie Rossignol; Dhouha Ghribi; Slim Tounsi; Fabrice Chandre; Raida Zribi-Zghal
Opublikowane w:
Biological Control, 2025, ISSN 1049-9644
Wydawca:
Elsevier B.V.
DOI:
10.1016/J.BIOCONTROL.2025.105768
Autorzy:
Gharsalli N, Mhiri N, Yaich C and Karray F
Opublikowane w:
Front Microbiol., ISSN 1664-302X
Wydawca:
Frontiers
DOI:
10.3389/FMICB.2026.1843317
Autorzy:
Nebli S, Saadaoui O, Gargouri H, Abid C, Jardak M, Djebali F, Loukil S, Marzoug RB, Jlaiel L, Croze S, Lachuer J, Kharrat N, Mnif S.
Opublikowane w:
Front Microbiol., ISSN 1664-302X
Wydawca:
Frontiers
DOI:
10.3389/FMICB.2026.1841716
Autorzy:
Sondes Mechri; Afef Najjari; Séverine Croze; Fakher Frikha; Nadia Zarai; Hadda-Imene Ouzari; Alexandre Noiriel; Ebru Toksoy Öner; Abdelkarim Abousalham; Marilize Le Roes-Hill; Slim Tounsi; Joel Lachuer; Bassem Jaouadi
Opublikowane w:
International Journal of Molecular Sciences, 2026, ISSN 1422-0067
Wydawca:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/ijms27125389
Autorzy:
Sondes Mechri, Afef Najjari, Séverine Croze, Hadda-Imene Ouzari, Marilize Le Roes-Hill, Slim Tounsi, Joel Lachuer, Bassem Jaouadi
Opublikowane w:
International Journal of Molecular Sciences, Numer 27, 2026, ISSN 1422-0067
Wydawca:
MDPI AG
DOI:
10.3390/IJMS27114714
Autorzy:
Fatma Benjeddou, Ines Mnif, Marie Rossignol, Dhouha Ghribi, Slim Tounsi, Fabrice Chandre, Raida Zribi-Zghal
Opublikowane w:
Biological Control, Numer 205, 2025, ISSN 1049-9644
Wydawca:
ScienceDirect
DOI:
10.1016/J.BIOCONTROL.2025.105768
Autorzy:
Benjeddou F, Frikha F, Chouaibi I, Hoppert M, Lieségang H, Ginibre C, Chandre F, Zribi Zghal R.
Opublikowane w:
International Journal of Biological Macromolecules, ISSN 0141-8130
Wydawca:
ScienceDirect
DOI:
10.1016/J.IJBIOMAC.2026.152924
Autorzy:
Mechri S, Najjari A, Croze S, Frikha F, Zarai N, Ouzari HI, Noiriel A, Öner ET, Abousalham A, Roes-Hill ML, Tounsi S, Lachuer J, Jaouadi B.
Opublikowane w:
International Journal of Molecular Sciences, ISSN 1422-0067
Wydawca:
MDPI
DOI:
10.3390/IJMS27125389
Autorzy:
Cyrine Abid, Hela Zouari-Mechichi, Riadh Benmarzoug, Tahar Mechichi, Najla Kharrat
Opublikowane w:
Journal of Fungi, Numer 12, ISSN 2309-608X
Wydawca:
MDPI
DOI:
10.3390/JOF12050299
Autorzy:
Sondes Mechri; Afef Najjari; Fakher Frikha; Nadia Zarai; Alexandre Noiriel; Marilize Le Roes-Hill; Joel Lachuer; Slim Tounsi; Bassem Jaouadi
Opublikowane w:
International Journal of Biological Macromolecules, 2026, ISSN 0141-8130
Wydawca:
Elsevier B.V.
DOI:
10.3390/ijms27125389
Autorzy:
Sondes Mechri, Afef Najjari, Séverine Croze, Hadda-Imene Ouzari, Marilize Le Roes-Hill, Slim Tounsi, Joel Lachuer, Bassem Jaouadi
Opublikowane w:
International Journal of Molecular Sciences, ISSN 1422-0067
Wydawca:
MDPI
DOI:
10.3390/IJMS27114714
Autorzy:
Sondes Mechri; Afef Najjari; Fakher Frikha; Nadia Zarai; Alexandre Noiriel; Marilize Le Roes-Hill; Joel Lachuer; Slim Tounsi; Bassem Jaouadi
Opublikowane w:
International Journal of Biological Macromolecules, Numer 322, ISSN 0141-8130
Wydawca:
ScienceDirect
DOI:
10.1016/J.IJBIOMAC.2025.146696
Autorzy:
Cyrine Abid, Hela Zouari-Mechichi, Riadh Benmarzoug, Tahar Mechichi, Najla Kharrat
Opublikowane w:
Journal of Fungi, Numer 12, 2026, ISSN 2309-608X
Wydawca:
MDPI AG
DOI:
10.3390/JOF12050299
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